Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46754 * 2 1 4 4 C 1.52998 * 109.47021 * 240.00018 * 2 1 3 5 5 C 1.50702 * 109.47131 * 119.99841 * 2 1 3 6 6 O 1.20757 * 119.99898 * 0.02562 * 5 2 1 7 7 C 1.50701 * 119.99711 * 180.02562 * 5 2 1 8 8 O 1.45197 * 109.46836 * 180.02562 * 7 5 2 9 9 C 1.34780 * 116.99871 * 179.97438 * 8 7 5 10 10 O 1.21506 * 119.99783 * 0.02562 * 9 8 7 11 11 C 1.47511 * 119.99973 * 179.97438 * 9 8 7 12 12 C 1.40064 * 119.89731 * 180.02562 * 11 9 8 13 13 C 1.36304 * 120.10037 * 180.25750 * 12 11 9 14 14 C 1.40906 * 119.89461 * 359.51425 * 13 12 11 15 15 C 1.41087 * 120.10230 * 180.23510 * 14 13 12 16 16 H 1.07997 * 120.00187 * 204.80760 * 15 14 13 17 17 C 1.40248 * 119.99825 * 24.80057 * 15 14 13 18 18 N 1.30632 * 119.99956 * 17.74140 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 197.74197 * 17 15 14 20 20 H 1.48501 * 109.47297 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47062 * 120.00118 * 19 17 15 22 22 H 1.48501 * 109.47134 * 239.99943 * 19 17 15 23 23 C 1.40902 * 119.80173 * 0.50155 * 14 13 12 24 24 C 1.36301 * 119.90165 * 359.73599 * 23 14 13 25 25 H 1.09000 * 109.47017 * 299.99794 * 1 2 3 26 26 H 1.08995 * 109.47167 * 59.99959 * 1 2 3 27 27 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47202 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47245 * 300.00196 * 3 2 1 30 30 H 1.09000 * 109.47283 * 59.99763 * 3 2 1 31 31 H 1.08995 * 109.47404 * 299.99869 * 4 2 1 32 32 H 1.09004 * 109.46965 * 59.99811 * 4 2 1 33 33 H 1.08998 * 109.46755 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47218 * 60.00314 * 7 5 2 35 35 H 1.08999 * 109.46934 * 300.00227 * 7 5 2 36 36 H 1.07995 * 119.95118 * 359.97235 * 12 11 9 37 37 H 1.07991 * 120.05310 * 179.74788 * 13 12 11 38 38 H 0.97000 * 120.00424 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.05194 * 179.70835 * 23 14 13 40 40 H 1.07993 * 119.95472 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2477 -1.1697 2.0251 7 6 3.5140 -0.8475 1.4692 8 8 3.7397 -1.5653 2.7110 9 6 5.0212 -1.7743 3.0727 10 8 5.9249 -1.3674 2.3698 11 6 5.3264 -2.4960 4.3225 12 6 6.6589 -2.7115 4.6966 13 6 6.9457 -3.3824 5.8479 14 6 5.8993 -3.8505 6.6673 15 6 6.1912 -4.5411 7.8624 16 1 5.4708 -5.2304 8.2775 17 6 7.4169 -4.3326 8.5113 18 7 8.1337 -3.2774 8.2299 19 14 8.0245 -5.5638 9.7779 20 1 7.0358 -6.6636 9.9133 21 1 9.3287 -6.1225 9.3393 22 1 8.1924 -4.8845 11.0877 23 6 4.5604 -3.6316 6.2867 24 6 4.2829 -2.9640 5.1312 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.9648 0.1427 1.5344 35 1 3.9655 -1.3986 0.6442 36 1 7.4602 -2.3495 4.0696 37 1 7.9733 -3.5517 6.1335 38 1 8.9813 -3.1329 8.6790 39 1 3.7552 -3.9927 6.9093 40 1 3.2571 -2.7961 4.8385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758697551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = -125.448437 kcal Electronic energy + Delta-G solvation = -22165.144167 eV Core-core repulsion = 18716.141170 eV Total energy + Delta-G solvation = -3449.002997 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34107 -39.27526 -37.42373 -35.98195 -35.53806 -33.97342 -30.43221 -29.70703 -29.11419 -27.67769 -27.19045 -26.03454 -23.18930 -22.05647 -21.03978 -19.90177 -18.60640 -17.60257 -17.09223 -16.46175 -16.18986 -15.93720 -15.40414 -14.89394 -14.84937 -14.05759 -13.95550 -13.75572 -13.39761 -13.09194 -12.69491 -12.52608 -12.46258 -12.38596 -12.28047 -12.21008 -12.00032 -11.84822 -11.40199 -11.29007 -11.26062 -11.16553 -10.99816 -10.70643 -10.30502 -10.13540 -9.74970 -9.56941 -9.40892 -9.36228 -7.75590 -7.64846 -7.10533 -4.68510 1.83651 2.03065 2.84630 2.92458 2.97984 2.98185 3.03385 3.60156 3.70237 4.03301 4.38917 4.45374 4.52897 4.64807 5.15588 5.18455 5.22288 5.25644 5.31570 5.42864 5.51454 5.51698 5.55846 5.62974 5.79251 5.89131 5.91046 6.00346 6.22019 6.26399 6.73630 6.80694 6.92219 7.04625 7.07523 7.39848 7.41418 7.61199 7.78412 7.85930 8.00513 8.35281 8.55824 8.66505 8.70277 9.80749 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.002832 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.950971 B = 9885.264665 C =10281.620437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.108 4.108 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.362 3.638 6 O -0.423 6.423 7 C 0.016 3.984 8 O -0.345 6.345 9 C 0.513 3.487 10 O -0.551 6.551 11 C -0.275 4.275 12 C -0.032 4.032 13 C -0.185 4.185 14 C 0.132 3.868 15 C -0.433 4.433 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.763 5.763 19 Si 0.916 3.084 20 H -0.256 1.256 21 H -0.268 1.268 22 H -0.270 1.270 23 C -0.239 4.239 24 C -0.026 4.026 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 5.199 -12.099 15.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.234 3.766 6 O -0.293 6.293 7 C -0.060 4.060 8 O -0.262 6.262 9 C 0.366 3.634 10 O -0.445 6.445 11 C -0.278 4.278 12 C -0.051 4.051 13 C -0.204 4.204 14 C 0.128 3.872 15 C -0.460 4.460 16 H 0.106 0.894 17 C -0.150 4.150 18 N -0.385 5.385 19 Si 0.739 3.261 20 H -0.179 1.179 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.259 4.259 24 C -0.045 4.045 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.671 5.205 -11.803 15.008 hybrid contribution 0.529 -0.237 0.387 0.697 sum -7.141 4.969 -11.416 14.353 Atomic orbital electron populations 1.21724 0.92159 1.02907 1.02278 1.21137 0.98026 0.97138 0.94643 1.21892 1.01785 0.93254 1.03050 1.21891 1.01776 1.00577 0.95720 1.24520 0.89712 0.76386 0.85964 1.90423 1.58439 1.36714 1.43749 1.23205 0.95942 0.98959 0.87847 1.86702 1.30903 1.69960 1.38651 1.21699 0.78988 0.76652 0.86062 1.90695 1.46792 1.52095 1.54943 1.18189 0.94658 1.17969 0.96975 1.20444 0.93484 0.95433 0.95690 1.20977 0.99771 1.05187 0.94475 1.17863 0.91059 0.86957 0.91301 1.19969 1.00385 1.20233 1.05394 0.89385 1.26178 0.95841 0.95096 0.97933 1.69747 1.11529 1.22221 1.35034 0.86124 0.79667 0.80868 0.79457 1.17947 1.19255 1.19549 1.20730 0.96122 1.09390 0.99618 1.20601 0.96848 0.93872 0.93177 0.91904 0.91797 0.91907 0.91540 0.91115 0.91904 0.91911 0.91121 0.91545 0.88432 0.88447 0.88011 0.85894 0.89998 0.88155 0.87759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.19 7.76 37.16 0.29 -0.90 16 2 C -0.11 -1.01 0.87 -155.66 -0.14 -1.14 16 3 C -0.14 -1.08 8.26 37.16 0.31 -0.78 16 4 C -0.14 -1.07 8.26 37.16 0.31 -0.77 16 5 C 0.36 4.90 6.05 -29.03 -0.18 4.72 16 6 O -0.42 -7.28 16.12 -13.71 -0.22 -7.50 16 7 C 0.02 0.23 5.23 36.01 0.19 0.42 16 8 O -0.34 -6.91 8.98 -47.41 -0.43 -7.34 16 9 C 0.51 11.54 7.89 34.51 0.27 11.81 16 10 O -0.55 -12.83 16.11 -19.27 -0.31 -13.14 16 11 C -0.28 -6.63 5.89 -104.75 -0.62 -7.24 16 12 C -0.03 -0.78 9.52 -39.59 -0.38 -1.15 16 13 C -0.19 -4.71 8.63 -39.27 -0.34 -5.05 16 14 C 0.13 3.37 5.57 -106.80 -0.60 2.77 16 15 C -0.43 -10.68 9.04 -37.75 -0.34 -11.02 16 16 H 0.09 2.06 7.91 -52.49 -0.42 1.64 16 17 C 0.07 1.67 5.14 -17.31 -0.09 1.58 16 18 N -0.76 -18.31 10.95 55.56 0.61 -17.71 16 19 Si 0.92 17.07 29.60 -169.99 -5.03 12.04 16 20 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 C -0.24 -5.75 9.73 -39.27 -0.38 -6.14 16 24 C -0.03 -0.61 9.55 -39.59 -0.38 -0.99 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 28 H 0.07 0.48 7.28 -51.93 -0.38 0.10 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.48 7.29 -51.93 -0.38 0.10 16 34 H 0.10 1.31 7.37 -51.93 -0.38 0.93 16 35 H 0.10 1.30 7.37 -51.93 -0.38 0.92 16 36 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 38 H 0.29 6.18 8.29 -40.82 -0.34 5.85 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.10 2.27 7.59 -52.49 -0.40 1.87 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -29.37 342.34 -7.86 -37.23 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.57 Total: 5.12 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.07 Total: -13.87 kcal Atomic # 7 Polarization: -18.31 SS G_CDS: 0.61 Total: -17.71 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.96 Total: -27.97 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.37 -7.86 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758697551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.218 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds