Wall clock time and date at job start Tue Mar 31 2020 05:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46754 * 2 1 4 4 C 1.52998 * 109.47021 * 240.00018 * 2 1 3 5 5 C 1.50702 * 109.47131 * 119.99841 * 2 1 3 6 6 O 1.20757 * 119.99898 * 0.02562 * 5 2 1 7 7 C 1.50701 * 119.99711 * 180.02562 * 5 2 1 8 8 O 1.45197 * 109.46836 * 180.02562 * 7 5 2 9 9 C 1.34780 * 116.99871 * 179.97438 * 8 7 5 10 10 O 1.21506 * 119.99783 * 0.02562 * 9 8 7 11 11 C 1.47511 * 119.99973 * 179.97438 * 9 8 7 12 12 C 1.40064 * 119.89731 * 180.02562 * 11 9 8 13 13 C 1.36304 * 120.10037 * 180.25750 * 12 11 9 14 14 C 1.40906 * 119.89461 * 359.51425 * 13 12 11 15 15 C 1.41087 * 120.10230 * 180.23510 * 14 13 12 16 16 H 1.07997 * 120.00187 * 204.80760 * 15 14 13 17 17 C 1.40248 * 119.99825 * 24.80057 * 15 14 13 18 18 N 1.30632 * 119.99956 * 17.74140 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 197.74197 * 17 15 14 20 20 H 1.48501 * 109.47297 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47062 * 120.00118 * 19 17 15 22 22 H 1.48501 * 109.47134 * 239.99943 * 19 17 15 23 23 C 1.40902 * 119.80173 * 0.50155 * 14 13 12 24 24 C 1.36301 * 119.90165 * 359.73599 * 23 14 13 25 25 H 1.09000 * 109.47017 * 299.99794 * 1 2 3 26 26 H 1.08995 * 109.47167 * 59.99959 * 1 2 3 27 27 H 1.09004 * 109.46744 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47202 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47245 * 300.00196 * 3 2 1 30 30 H 1.09000 * 109.47283 * 59.99763 * 3 2 1 31 31 H 1.08995 * 109.47404 * 299.99869 * 4 2 1 32 32 H 1.09004 * 109.46965 * 59.99811 * 4 2 1 33 33 H 1.08998 * 109.46755 * 179.97438 * 4 2 1 34 34 H 1.08996 * 109.47218 * 60.00314 * 7 5 2 35 35 H 1.08999 * 109.46934 * 300.00227 * 7 5 2 36 36 H 1.07995 * 119.95118 * 359.97235 * 12 11 9 37 37 H 1.07991 * 120.05310 * 179.74788 * 13 12 11 38 38 H 0.97000 * 120.00424 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.05194 * 179.70835 * 23 14 13 40 40 H 1.07993 * 119.95472 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2477 -1.1697 2.0251 7 6 3.5140 -0.8475 1.4692 8 8 3.7397 -1.5653 2.7110 9 6 5.0212 -1.7743 3.0727 10 8 5.9249 -1.3674 2.3698 11 6 5.3264 -2.4960 4.3225 12 6 6.6589 -2.7115 4.6966 13 6 6.9457 -3.3824 5.8479 14 6 5.8993 -3.8505 6.6673 15 6 6.1912 -4.5411 7.8624 16 1 5.4708 -5.2304 8.2775 17 6 7.4169 -4.3326 8.5113 18 7 8.1337 -3.2774 8.2299 19 14 8.0245 -5.5638 9.7779 20 1 7.0358 -6.6636 9.9133 21 1 9.3287 -6.1225 9.3393 22 1 8.1924 -4.8845 11.0877 23 6 4.5604 -3.6316 6.2867 24 6 4.2829 -2.9640 5.1312 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.9648 0.1427 1.5344 35 1 3.9655 -1.3986 0.6442 36 1 7.4602 -2.3495 4.0696 37 1 7.9733 -3.5517 6.1335 38 1 8.9813 -3.1329 8.6790 39 1 3.7552 -3.9927 6.9093 40 1 3.2571 -2.7961 4.8385 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758697551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:04 Heat of formation + Delta-G solvation = -138.733679 kcal Electronic energy + Delta-G solvation = -22165.720258 eV Core-core repulsion = 18716.141170 eV Total energy + Delta-G solvation = -3449.579088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66148 -40.74256 -39.25194 -37.25170 -36.80020 -35.79344 -32.23755 -31.54727 -30.42828 -28.25812 -28.13088 -27.64466 -24.55303 -23.52714 -22.87870 -21.64580 -19.65546 -19.45046 -18.68367 -17.96745 -17.59647 -17.22935 -16.86510 -16.19134 -16.00176 -15.76935 -15.22176 -14.81699 -14.81329 -14.66293 -14.08054 -14.06821 -13.83470 -13.59786 -13.30764 -13.15095 -13.09151 -13.02154 -12.86629 -12.69924 -12.64183 -12.42379 -11.94767 -11.86135 -11.83673 -11.78046 -11.46355 -11.36272 -11.18596 -10.58300 -9.67133 -9.56225 -8.87494 -6.57963 0.19322 0.76015 1.10760 1.34031 1.40198 1.56139 1.59578 1.84063 2.13958 2.64932 2.87814 3.59388 3.60999 3.81703 3.89155 4.04911 4.07207 4.19268 4.32108 4.36033 4.41742 4.69790 4.71334 4.81586 4.89949 4.92742 4.92781 4.95238 4.99288 5.10867 5.17604 5.20635 5.27682 5.32093 5.34547 5.52291 5.73865 5.88982 5.94784 6.12106 6.32940 6.46239 6.67292 6.78794 6.94255 8.07593 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.042225 B = 0.002832 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.950971 B = 9885.264665 C =10281.620437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.368 3.632 6 O -0.468 6.468 7 C 0.002 3.998 8 O -0.355 6.355 9 C 0.519 3.481 10 O -0.563 6.563 11 C -0.294 4.294 12 C -0.037 4.037 13 C -0.201 4.201 14 C 0.105 3.895 15 C -0.455 4.455 16 H 0.096 0.904 17 C 0.033 3.967 18 N -0.792 5.792 19 Si 0.993 3.007 20 H -0.252 1.252 21 H -0.261 1.261 22 H -0.262 1.262 23 C -0.250 4.250 24 C -0.024 4.024 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.300 0.700 39 H 0.115 0.885 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 5.458 -12.879 16.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.199 4.199 5 C 0.243 3.757 6 O -0.341 6.341 7 C -0.072 4.072 8 O -0.273 6.273 9 C 0.372 3.628 10 O -0.458 6.458 11 C -0.296 4.296 12 C -0.056 4.056 13 C -0.220 4.220 14 C 0.102 3.898 15 C -0.481 4.481 16 H 0.114 0.886 17 C -0.187 4.187 18 N -0.414 5.414 19 Si 0.812 3.188 20 H -0.175 1.175 21 H -0.186 1.186 22 H -0.186 1.186 23 C -0.270 4.270 24 C -0.043 4.043 25 H 0.068 0.932 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.133 0.867 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.938 5.488 -12.614 15.882 hybrid contribution 0.578 -0.242 0.564 0.843 sum -7.359 5.246 -12.050 15.062 Atomic orbital electron populations 1.21751 0.91791 1.02397 1.03082 1.21187 0.98241 0.97823 0.92884 1.21947 1.02111 0.91862 1.04055 1.21945 1.02117 1.00331 0.95551 1.25126 0.88503 0.75341 0.86757 1.90417 1.59065 1.38964 1.45642 1.23748 0.97738 0.99536 0.86207 1.86653 1.29188 1.70374 1.41050 1.21358 0.79696 0.76252 0.85477 1.90671 1.47374 1.52562 1.55229 1.18422 0.94617 1.18482 0.98127 1.20527 0.94122 0.95374 0.95561 1.20959 0.99497 1.06427 0.95157 1.18200 0.91710 0.87740 0.92157 1.20300 1.01812 1.20539 1.05487 0.88647 1.27103 0.95242 0.96596 0.99740 1.69773 1.12132 1.23575 1.35939 0.84978 0.79064 0.78076 0.76654 1.17522 1.18581 1.18623 1.20930 0.96105 1.09736 1.00192 1.20736 0.97402 0.93295 0.92818 0.93193 0.88856 0.93133 0.91102 0.88459 0.92629 0.92552 0.88479 0.91086 0.86765 0.86640 0.87677 0.86763 0.88853 0.86739 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 7.76 71.98 0.56 -1.59 16 2 C -0.10 -1.67 0.87 -52.93 -0.05 -1.71 16 3 C -0.14 -1.78 8.26 71.98 0.59 -1.19 16 4 C -0.14 -1.75 8.26 71.98 0.59 -1.16 16 5 C 0.37 9.69 6.05 29.10 0.18 9.87 16 6 O -0.47 -16.26 16.12 17.41 0.28 -15.98 16 7 C 0.00 0.05 5.23 71.24 0.37 0.42 16 8 O -0.36 -14.23 8.98 -50.50 -0.45 -14.68 16 9 C 0.52 23.42 7.89 70.27 0.55 23.97 16 10 O -0.56 -26.07 16.11 19.82 0.32 -25.76 16 11 C -0.29 -14.37 5.89 -19.94 -0.12 -14.49 16 12 C -0.04 -1.87 9.52 22.26 0.21 -1.65 16 13 C -0.20 -10.55 8.63 22.47 0.19 -10.35 16 14 C 0.11 5.51 5.57 -21.28 -0.12 5.39 16 15 C -0.46 -22.60 9.04 23.46 0.21 -22.39 16 16 H 0.10 4.45 7.91 -2.91 -0.02 4.42 16 17 C 0.03 1.54 5.14 85.36 0.44 1.97 16 18 N -0.79 -38.17 10.95 21.88 0.24 -37.93 16 19 Si 0.99 34.15 29.60 68.60 2.03 36.18 16 20 H -0.25 -8.44 7.11 99.48 0.71 -7.73 16 21 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 22 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 23 C -0.25 -12.22 9.73 22.47 0.22 -12.00 16 24 C -0.02 -1.13 9.55 22.26 0.21 -0.92 16 25 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 28 H 0.07 0.83 7.28 -2.39 -0.02 0.82 16 29 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.07 0.82 7.29 -2.39 -0.02 0.80 16 34 H 0.11 2.92 7.37 -2.39 -0.02 2.90 16 35 H 0.12 2.92 7.37 -2.39 -0.02 2.90 16 36 H 0.11 5.09 7.63 -2.91 -0.02 5.07 16 37 H 0.11 6.07 6.16 -2.92 -0.02 6.05 16 38 H 0.30 12.77 8.29 -92.71 -0.77 12.00 16 39 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 40 H 0.12 5.16 7.59 -2.91 -0.02 5.14 16 Total: -1.00 -64.21 342.34 7.51 -56.70 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 1.04 Total: 27.29 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.06 Total: -25.82 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.24 Total: -37.93 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: 0.15 Total: -56.42 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Total: -64.21 7.51 -56.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758697551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.036 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds