Wall clock time and date at job start Tue Mar 31 2020 06:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.46855 * 2 1 4 4 O 1.20762 * 119.99962 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99823 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46737 * 180.02562 * 5 3 2 7 7 C 1.52993 * 109.46759 * 180.02562 * 6 5 3 8 8 O 1.45204 * 109.47117 * 179.97438 * 7 6 5 9 9 C 1.34706 * 117.00215 * 179.97438 * 8 7 6 10 10 O 1.21467 * 119.99541 * 0.02562 * 9 8 7 11 11 C 1.47771 * 120.00017 * 180.02562 * 9 8 7 12 12 C 1.39966 * 120.02762 * 359.97438 * 11 9 8 13 13 C 1.38314 * 120.34705 * 180.02562 * 12 11 9 14 14 C 1.37752 * 120.42420 * 0.02562 * 13 12 11 15 15 C 1.40759 * 120.04881 * 359.97438 * 14 13 12 16 16 C 1.41436 * 120.17375 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00253 * 24.43142 * 16 15 14 18 18 C 1.39938 * 119.99832 * 204.42304 * 16 15 14 19 19 N 1.30825 * 120.00005 * 17.85063 * 18 16 15 20 20 Si 1.86806 * 119.99952 * 197.84460 * 18 16 15 21 21 H 1.48493 * 109.47153 * 94.69700 * 20 18 16 22 22 H 1.48504 * 109.46792 * 214.69609 * 20 18 16 23 23 H 1.48497 * 109.46905 * 334.69475 * 20 18 16 24 24 C 1.39043 * 120.02812 * 180.02562 * 11 9 8 25 25 H 1.08990 * 109.47639 * 60.00397 * 1 2 3 26 26 H 1.09002 * 109.46823 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46998 * 299.99639 * 1 2 3 28 28 H 1.08999 * 109.47519 * 240.00424 * 2 1 3 29 29 H 1.09002 * 109.47459 * 119.99885 * 2 1 3 30 30 H 1.08995 * 109.47403 * 59.99795 * 5 3 2 31 31 H 1.08995 * 109.47026 * 299.99595 * 5 3 2 32 32 H 1.08995 * 109.47502 * 59.99660 * 6 5 3 33 33 H 1.09000 * 109.46578 * 299.99884 * 6 5 3 34 34 H 1.09003 * 109.47352 * 59.99905 * 7 6 5 35 35 H 1.09004 * 109.47426 * 299.99827 * 7 6 5 36 36 H 1.07994 * 119.82450 * 359.97438 * 12 11 9 37 37 H 1.08007 * 119.78420 * 180.02562 * 13 12 11 38 38 H 1.08004 * 119.98087 * 179.97438 * 14 13 12 39 39 H 0.97003 * 120.00154 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.20973 * 359.69575 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2474 2.3387 0.0005 5 6 3.5139 1.6963 -0.0006 6 6 3.7516 3.2078 0.0002 7 6 5.2558 3.4874 -0.0011 8 8 5.4815 4.9218 -0.0009 9 6 6.7622 5.3394 -0.0014 10 8 7.6656 4.5275 -0.0024 11 6 7.0679 6.7851 -0.0008 12 6 6.0272 7.7211 -0.0002 13 6 6.3057 9.0759 -0.0001 14 6 7.6097 9.5199 -0.0011 15 6 8.6697 8.5937 -0.0017 16 6 10.0095 9.0467 -0.0033 17 1 10.2488 10.0266 0.3828 18 6 11.0253 8.2252 -0.5050 19 7 10.7260 7.2127 -1.2775 20 14 12.8085 8.5743 -0.0717 21 1 13.2025 7.7541 1.1018 22 1 13.6750 8.2321 -1.2282 23 1 12.9655 10.0143 0.2556 24 6 8.3896 7.2169 -0.0018 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9647 1.2576 -0.8907 31 1 3.9653 1.2574 0.8891 32 1 3.3009 3.6461 0.8906 33 1 3.3000 3.6470 -0.8893 34 1 5.7061 3.0492 -0.8918 35 1 5.7078 3.0480 0.8882 36 1 5.0013 7.3836 -0.0006 37 1 5.4956 9.7902 0.0008 38 1 7.8191 10.5795 -0.0014 39 1 11.4300 6.6430 -1.6250 40 1 9.1959 6.4984 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759498912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:38 Heat of formation + Delta-G solvation = -145.215752 kcal Electronic energy + Delta-G solvation = -21586.993918 eV Core-core repulsion = 18137.133746 eV Total energy + Delta-G solvation = -3449.860172 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47468 -40.63336 -39.22469 -37.59895 -35.64736 -34.83255 -33.71457 -32.21777 -31.38145 -29.10796 -27.28796 -25.68938 -24.41373 -22.87635 -22.46665 -21.56751 -20.32957 -19.62083 -18.23409 -17.80582 -17.73566 -17.06737 -16.77080 -16.60650 -16.41160 -15.73171 -15.49005 -15.19000 -15.04157 -14.40189 -14.32372 -14.11704 -13.62055 -13.56745 -13.41801 -13.01347 -12.91806 -12.84228 -12.62293 -12.57860 -12.39710 -12.22680 -12.21073 -12.02551 -11.98729 -11.55660 -11.50815 -11.31014 -11.11019 -10.53627 -9.63720 -9.46706 -8.69814 -6.41003 0.11161 0.94852 1.05460 1.37825 1.45889 1.52715 1.65793 1.78699 2.18889 2.70729 3.05814 3.61239 3.79763 3.84077 3.86283 4.11252 4.15687 4.27604 4.33449 4.41231 4.41538 4.52189 4.61205 4.68697 4.83113 4.96941 4.98394 5.02347 5.03435 5.08333 5.09272 5.12016 5.26957 5.32142 5.35790 5.43834 5.80067 5.87962 5.99543 6.21102 6.51498 6.61840 6.79714 6.85295 6.87440 8.27926 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031599 B = 0.002634 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.888498 B =10628.571434 C =11408.083534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.170 4.170 3 C 0.356 3.644 4 O -0.498 6.498 5 C -0.166 4.166 6 C -0.104 4.104 7 C 0.059 3.941 8 O -0.355 6.355 9 C 0.516 3.484 10 O -0.545 6.545 11 C -0.130 4.130 12 C -0.184 4.184 13 C -0.099 4.099 14 C -0.204 4.204 15 C 0.065 3.935 16 C -0.492 4.492 17 H 0.088 0.912 18 C 0.029 3.971 19 N -0.826 5.826 20 Si 0.986 3.014 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.250 1.250 24 C -0.122 4.122 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.044 0.956 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.289 0.711 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -13.642 2.028 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.207 4.207 3 C 0.234 3.766 4 O -0.375 6.375 5 C -0.203 4.203 6 C -0.141 4.141 7 C -0.014 4.014 8 O -0.272 6.272 9 C 0.364 3.636 10 O -0.437 6.437 11 C -0.131 4.131 12 C -0.203 4.203 13 C -0.117 4.117 14 C -0.223 4.223 15 C 0.063 3.937 16 C -0.521 4.521 17 H 0.106 0.894 18 C -0.186 4.186 19 N -0.451 5.451 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.174 1.174 24 C -0.142 4.142 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.526 -13.617 1.873 18.596 hybrid contribution 1.002 -0.038 -0.062 1.004 sum -11.524 -13.655 1.811 17.959 Atomic orbital electron populations 1.21624 0.94888 1.02518 1.01604 1.22124 0.97384 0.94215 1.07012 1.25139 0.90932 0.91900 0.68598 1.90424 1.60089 1.49341 1.37603 1.22095 0.95640 0.94991 1.07604 1.21287 0.91703 0.97293 1.03838 1.23303 0.98279 0.76770 1.03088 1.86557 1.27788 1.28709 1.84111 1.21647 0.80427 0.90215 0.71325 1.90727 1.48000 1.56697 1.48266 1.19106 0.95312 0.88454 1.10250 1.20941 0.97301 0.92814 1.09282 1.20959 0.96363 0.95099 0.99295 1.21500 0.92698 0.98725 1.09421 1.17928 0.94476 0.91131 0.90213 1.19875 0.91652 1.03212 1.37387 0.89383 1.26891 1.06505 0.93423 0.91787 1.69873 1.37618 1.14744 1.22888 0.85131 0.75255 0.80232 0.78768 1.19074 1.19358 1.17366 1.21470 0.93631 0.96804 1.02315 0.93726 0.90134 0.93690 0.85935 0.85877 0.85580 0.85463 0.91270 0.91449 0.90904 0.90622 0.85321 0.84227 0.86586 0.90082 0.87473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.20 71.98 0.66 -1.10 16 2 C -0.17 -1.44 6.36 29.85 0.19 -1.25 16 3 C 0.36 5.57 7.16 29.10 0.21 5.78 16 4 O -0.50 -12.55 15.61 -1.46 -0.02 -12.57 16 5 C -0.17 -2.18 5.64 29.85 0.17 -2.01 16 6 C -0.10 -2.29 4.89 30.59 0.15 -2.14 16 7 C 0.06 1.65 5.47 71.98 0.39 2.04 16 8 O -0.35 -13.43 9.46 -56.16 -0.53 -13.96 16 9 C 0.52 23.79 7.90 70.34 0.56 24.34 16 10 O -0.54 -27.37 16.12 19.94 0.32 -27.05 16 11 C -0.13 -6.44 5.87 -20.14 -0.12 -6.55 16 12 C -0.18 -8.00 9.62 22.71 0.22 -7.78 16 13 C -0.10 -4.12 10.00 22.17 0.22 -3.90 16 14 C -0.20 -9.54 9.78 22.77 0.22 -9.32 16 15 C 0.06 3.50 5.57 -21.32 -0.12 3.38 16 16 C -0.49 -26.27 9.05 23.47 0.21 -26.06 16 17 H 0.09 4.41 7.91 -2.91 -0.02 4.39 16 18 C 0.03 1.48 5.14 85.25 0.44 1.92 16 19 N -0.83 -45.01 10.95 21.82 0.24 -44.77 16 20 Si 0.99 38.61 29.60 68.60 2.03 40.64 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 24 C -0.12 -6.78 8.23 23.02 0.19 -6.59 16 25 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 26 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 28 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.67 8.10 -2.39 -0.02 1.65 16 33 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.98 8.14 -2.38 -0.02 1.97 16 36 H 0.13 4.91 7.59 -2.91 -0.02 4.89 16 37 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 39 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 40 H 0.11 6.47 5.74 -2.91 -0.02 6.45 16 Total: -1.00 -70.13 347.97 6.66 -63.47 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.03 Total: 23.47 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.59 Total: -29.24 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: 0.24 Total: -44.77 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.23 Total: -53.58 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -70.13 6.66 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759498912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.742 kcal (2) G-P(sol) polarization free energy of solvation -70.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds