Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47179 * 180.02562 * 13 11 10 15 15 C 1.46901 * 110.99831 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.73097 * 34.29827 * 15 14 13 17 17 C 1.54349 * 110.82498 * 270.88369 * 15 14 13 18 18 C 1.51378 * 105.16910 * 215.44466 * 17 15 14 19 19 C 1.38542 * 130.35685 * 197.16387 * 18 17 15 20 20 C 1.38129 * 120.33426 * 180.02562 * 19 18 17 21 21 C 1.38162 * 119.99728 * 0.02562 * 20 19 18 22 22 C 1.38608 * 119.87230 * 359.97438 * 21 20 19 23 23 O 1.35892 * 119.95091 * 180.02562 * 22 21 20 24 24 C 1.38125 * 109.76099 * 17.18824 * 18 17 15 25 25 C 1.51668 * 109.86618 * 359.83320 * 24 18 17 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 30 30 H 1.09000 * 109.46736 * 300.00153 * 13 11 10 31 31 H 1.08997 * 109.46873 * 59.99459 * 13 11 10 32 32 H 1.00899 * 110.99910 * 303.95332 * 14 13 11 33 33 H 1.09000 * 110.29808 * 334.37339 * 17 15 14 34 34 H 1.09004 * 110.29977 * 96.42387 * 17 15 14 35 35 H 1.08003 * 119.83385 * 0.02919 * 19 18 17 36 36 H 1.07999 * 120.00134 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.06492 * 179.97438 * 21 20 19 38 38 H 0.96699 * 114.00104 * 90.00178 * 23 22 21 39 39 H 1.08993 * 110.50068 * 224.15645 * 25 24 18 40 40 H 1.09003 * 110.25927 * 101.90161 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 7 1.9987 -7.3010 0.0015 15 6 2.9232 -8.4426 0.0015 16 1 3.8205 -8.2124 0.5759 17 6 3.2859 -8.8549 -1.4410 18 6 3.4157 -10.3626 -1.4013 19 6 4.0175 -11.2350 -2.2935 20 6 4.0141 -12.5946 -2.0495 21 6 3.4081 -13.0906 -0.9113 22 6 2.8048 -12.2216 -0.0158 23 8 2.2087 -12.7077 1.1045 24 6 2.8090 -10.8536 -0.2617 25 6 2.2312 -9.7091 0.5486 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 3.1568 -3.4353 0.0009 30 1 3.3599 -5.9714 -0.8883 31 1 3.3598 -5.9706 0.8916 32 1 1.3620 -7.3509 0.7826 33 1 2.4929 -8.5614 -2.1289 34 1 4.2310 -8.4001 -1.7381 35 1 4.4917 -10.8502 -3.1843 36 1 4.4845 -13.2699 -2.7489 37 1 3.4045 -14.1535 -0.7197 38 1 2.7988 -12.7714 1.8679 39 1 2.4589 -9.8374 1.6067 40 1 1.1535 -9.6463 0.3977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759722189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = -61.967844 kcal Electronic energy + Delta-G solvation = -21691.642889 eV Core-core repulsion = 18277.685369 eV Total energy + Delta-G solvation = -3413.957520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.70035 -39.02537 -37.79916 -36.39100 -34.46869 -33.53954 -32.42806 -30.60880 -29.00970 -27.53441 -27.10457 -25.09151 -22.61659 -22.23587 -21.48088 -20.73633 -19.78403 -18.25263 -17.56083 -16.58539 -16.40189 -16.26208 -15.78723 -15.42924 -15.22186 -14.75494 -14.21268 -13.89887 -13.71783 -13.50636 -13.17197 -12.99522 -12.94234 -12.45859 -12.42070 -12.26602 -12.02375 -11.76044 -11.55049 -11.37743 -11.17383 -11.03879 -10.79108 -10.78249 -10.19372 -9.24331 -8.85955 -8.83383 -8.80215 -8.70417 -8.53595 -8.01889 -6.53322 -4.27100 0.94634 1.01325 3.25247 3.29960 3.35861 3.39532 3.54919 3.62175 3.92008 4.04381 4.24968 4.41713 4.46361 4.69934 4.75390 4.88306 5.02613 5.14249 5.20161 5.25062 5.25726 5.38404 5.48011 5.51239 5.53737 5.55326 5.70814 5.82526 5.92040 6.04930 6.11722 6.29093 6.51577 6.81556 7.00177 7.20230 7.25921 7.29921 7.34523 7.64118 8.25011 8.44338 8.69609 8.96012 9.46877 10.86904 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044008 B = 0.002309 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.090961 B =12124.720262 C =12471.194987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 1.079 2.921 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.624 4.624 8 H 0.057 0.943 9 C 0.240 3.760 10 N -0.709 5.709 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.040 3.960 14 N -0.662 5.662 15 C 0.086 3.914 16 H 0.059 0.941 17 C -0.077 4.077 18 C -0.073 4.073 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.150 4.150 22 C 0.116 3.884 23 O -0.498 6.498 24 C -0.118 4.118 25 C -0.076 4.076 26 H 0.273 0.727 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.392 0.608 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.355 0.645 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.387 0.613 39 H 0.074 0.926 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.377 -24.769 -0.175 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.184 4.184 3 Si 0.906 3.094 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.662 4.662 8 H 0.075 0.925 9 C 0.119 3.881 10 N -0.359 5.359 11 C 0.281 3.719 12 O -0.422 6.422 13 C -0.092 4.092 14 N -0.296 5.296 15 C -0.024 4.024 16 H 0.077 0.923 17 C -0.114 4.114 18 C -0.073 4.073 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.168 4.168 22 C 0.072 3.928 23 O -0.308 6.308 24 C -0.119 4.119 25 C -0.114 4.114 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.225 0.775 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.243 0.757 39 H 0.093 0.907 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.696 -23.271 -1.200 25.640 hybrid contribution 1.430 -1.659 1.184 2.490 sum 12.126 -24.931 -0.017 27.723 Atomic orbital electron populations 1.70730 1.06880 1.31107 1.44938 1.25891 0.96440 1.02780 0.93308 0.83405 0.74509 0.74606 0.76857 1.21281 1.21368 1.20763 1.22088 0.94565 0.91507 1.58021 0.92453 1.19159 0.89008 0.83488 0.96441 1.46264 1.11025 1.05793 1.72775 1.20400 0.89583 0.84246 0.77709 1.90667 1.16701 1.84722 1.50114 1.21884 0.95633 0.89262 1.02433 1.60149 1.18329 0.99556 1.51536 1.22193 0.94435 0.90026 0.95741 0.92297 1.21177 1.02640 0.89724 0.97903 1.20542 0.96586 0.96129 0.94050 1.20684 1.00641 0.92796 0.99420 1.20913 0.99271 0.95092 0.96987 1.21290 0.99706 0.99867 0.95984 1.18076 0.96051 0.89471 0.89246 1.84834 1.39527 1.86109 1.20339 1.20851 0.99923 0.93149 0.98011 1.21155 1.01275 0.90409 0.98535 0.91643 0.96609 0.96512 0.77497 0.88431 0.92593 0.82466 0.88356 0.90677 0.85825 0.85434 0.85355 0.75697 0.90722 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.65 55.43 0.76 -26.59 16 2 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 3 Si 1.08 24.37 29.90 -169.99 -5.08 19.28 16 4 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.62 -17.09 9.28 -34.44 -0.32 -17.41 16 8 H 0.06 1.49 7.60 -52.48 -0.40 1.09 16 9 C 0.24 6.34 4.74 -5.19 -0.02 6.31 16 10 N -0.71 -14.78 5.55 -61.47 -0.34 -15.12 16 11 C 0.50 9.65 7.87 -10.98 -0.09 9.57 16 12 O -0.54 -12.88 16.20 5.56 0.09 -12.79 16 13 C 0.04 0.55 6.04 -4.97 -0.03 0.52 16 14 N -0.66 -8.66 5.92 -106.50 -0.63 -9.29 16 15 C 0.09 0.89 3.37 -66.30 -0.22 0.66 16 16 H 0.06 0.55 7.86 -51.93 -0.41 0.14 16 17 C -0.08 -0.78 6.48 -26.84 -0.17 -0.95 16 18 C -0.07 -0.74 6.14 -104.22 -0.64 -1.38 16 19 C -0.12 -1.04 10.04 -39.51 -0.40 -1.43 16 20 C -0.10 -0.84 10.04 -39.65 -0.40 -1.23 16 21 C -0.15 -1.29 9.98 -39.47 -0.39 -1.69 16 22 C 0.12 1.14 6.70 -39.17 -0.26 0.88 16 23 O -0.50 -4.43 13.45 -19.40 -0.26 -4.70 16 24 C -0.12 -1.24 6.12 -103.91 -0.64 -1.87 16 25 C -0.08 -0.76 6.19 -26.70 -0.17 -0.93 16 26 H 0.27 8.39 7.22 -40.82 -0.29 8.10 16 27 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 28 H 0.02 0.49 8.01 -51.93 -0.42 0.07 16 29 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 30 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.35 4.80 8.15 -39.29 -0.32 4.48 16 33 H 0.10 1.13 8.08 -51.93 -0.42 0.72 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 38 H 0.39 1.60 9.06 45.56 0.41 2.01 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.05 8.06 -51.93 -0.42 0.63 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -34.53 341.49 -8.94 -43.47 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.77 Total: 9.02 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.85 Total: -8.44 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.22 Total: -51.00 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.17 Total: -17.49 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -5.08 Total: 19.28 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.53 -8.94 -43.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759722189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.495 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds