Wall clock time and date at job start Tue Mar 31 2020 06:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00178 * 0.02562 * 11 10 9 13 13 C 1.50709 * 120.00069 * 180.02562 * 11 10 9 14 14 N 1.46896 * 109.47179 * 180.02562 * 13 11 10 15 15 C 1.46901 * 110.99831 * 179.97438 * 14 13 11 16 16 H 1.08998 * 110.73097 * 34.29827 * 15 14 13 17 17 C 1.54349 * 110.82498 * 270.88369 * 15 14 13 18 18 C 1.51378 * 105.16910 * 215.44466 * 17 15 14 19 19 C 1.38542 * 130.35685 * 197.16387 * 18 17 15 20 20 C 1.38129 * 120.33426 * 180.02562 * 19 18 17 21 21 C 1.38162 * 119.99728 * 0.02562 * 20 19 18 22 22 C 1.38608 * 119.87230 * 359.97438 * 21 20 19 23 23 O 1.35892 * 119.95091 * 180.02562 * 22 21 20 24 24 C 1.38125 * 109.76099 * 17.18824 * 18 17 15 25 25 C 1.51668 * 109.86618 * 359.83320 * 24 18 17 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 0.96998 * 120.00140 * 0.02562 * 10 9 7 30 30 H 1.09000 * 109.46736 * 300.00153 * 13 11 10 31 31 H 1.08997 * 109.46873 * 59.99459 * 13 11 10 32 32 H 1.00899 * 110.99910 * 303.95332 * 14 13 11 33 33 H 1.09000 * 110.29808 * 334.37339 * 17 15 14 34 34 H 1.09004 * 110.29977 * 96.42387 * 17 15 14 35 35 H 1.08003 * 119.83385 * 0.02919 * 19 18 17 36 36 H 1.07999 * 120.00134 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.06492 * 179.97438 * 21 20 19 38 38 H 0.96699 * 114.00104 * 90.00178 * 23 22 21 39 39 H 1.08993 * 110.50068 * 224.15645 * 25 24 18 40 40 H 1.09003 * 110.25927 * 101.90161 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0011 13 6 2.7332 -6.0288 0.0016 14 7 1.9987 -7.3010 0.0015 15 6 2.9232 -8.4426 0.0015 16 1 3.8205 -8.2124 0.5759 17 6 3.2859 -8.8549 -1.4410 18 6 3.4157 -10.3626 -1.4013 19 6 4.0175 -11.2350 -2.2935 20 6 4.0141 -12.5946 -2.0495 21 6 3.4081 -13.0906 -0.9113 22 6 2.8048 -12.2216 -0.0158 23 8 2.2087 -12.7077 1.1045 24 6 2.8090 -10.8536 -0.2617 25 6 2.2312 -9.7091 0.5486 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 3.1568 -3.4353 0.0009 30 1 3.3599 -5.9714 -0.8883 31 1 3.3598 -5.9706 0.8916 32 1 1.3620 -7.3509 0.7826 33 1 2.4929 -8.5614 -2.1289 34 1 4.2310 -8.4001 -1.7381 35 1 4.4917 -10.8502 -3.1843 36 1 4.4845 -13.2699 -2.7489 37 1 3.4045 -14.1535 -0.7197 38 1 2.7988 -12.7714 1.8679 39 1 2.4589 -9.8374 1.6067 40 1 1.1535 -9.6463 0.3977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759722189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:24 Heat of formation + Delta-G solvation = -89.134721 kcal Electronic energy + Delta-G solvation = -21692.820933 eV Core-core repulsion = 18277.685369 eV Total energy + Delta-G solvation = -3415.135565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41465 -40.58764 -38.59969 -37.19138 -36.39664 -34.57267 -34.35702 -31.29579 -30.15172 -28.72161 -28.22022 -26.49510 -24.54659 -23.00439 -22.19262 -21.53489 -21.42428 -19.43271 -18.91248 -17.95720 -17.30436 -17.17857 -16.97054 -16.55995 -16.24938 -15.90631 -15.65141 -15.43086 -14.84065 -14.53967 -14.49980 -14.18048 -14.10255 -13.83079 -13.72208 -13.28045 -13.09990 -13.04075 -12.83568 -12.55875 -12.33468 -12.09770 -11.93834 -11.89280 -11.44333 -11.03074 -10.79114 -10.76810 -9.97468 -9.57315 -9.50671 -9.47000 -8.80189 -6.55804 0.29106 0.33891 1.55743 1.64712 1.68869 1.82329 2.25137 2.56684 2.65753 3.07831 3.11618 3.31440 3.33715 3.65801 3.86443 4.04425 4.07877 4.18220 4.25113 4.34500 4.44445 4.48753 4.57831 4.76358 4.77935 4.80770 4.82627 4.95296 4.95849 5.11498 5.15744 5.40493 5.44339 5.47860 5.53836 5.60725 5.90617 5.93389 6.08484 6.23657 6.31300 6.81614 6.84239 7.24156 7.42451 8.59158 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044008 B = 0.002309 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.090961 B =12124.720262 C =12471.194987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.035 4.035 3 Si 1.133 2.867 4 H -0.270 1.270 5 H -0.259 1.259 6 H -0.286 1.286 7 C -0.628 4.628 8 H 0.078 0.922 9 C 0.253 3.747 10 N -0.705 5.705 11 C 0.493 3.507 12 O -0.592 6.592 13 C 0.058 3.942 14 N -0.680 5.680 15 C 0.092 3.908 16 H 0.079 0.921 17 C -0.074 4.074 18 C -0.086 4.086 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.156 4.156 22 C 0.105 3.895 23 O -0.511 6.511 24 C -0.139 4.139 25 C -0.073 4.073 26 H 0.254 0.746 27 H -0.017 1.017 28 H -0.019 1.019 29 H 0.410 0.590 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.349 0.651 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.406 0.594 39 H 0.087 0.913 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.656 -25.596 -0.308 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.233 4.233 3 Si 0.952 3.048 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.212 1.212 7 C -0.666 4.666 8 H 0.096 0.904 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.280 3.720 12 O -0.473 6.473 13 C -0.074 4.074 14 N -0.314 5.314 15 C -0.018 4.018 16 H 0.097 0.903 17 C -0.112 4.112 18 C -0.087 4.087 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.175 4.175 22 C 0.061 3.939 23 O -0.324 6.324 24 C -0.140 4.140 25 C -0.110 4.110 26 H 0.063 0.937 27 H 0.000 1.000 28 H -0.001 1.001 29 H 0.246 0.754 30 H 0.141 0.859 31 H 0.108 0.892 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.163 0.837 38 H 0.265 0.735 39 H 0.105 0.895 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.037 -24.154 -1.322 27.968 hybrid contribution 0.379 -1.550 1.227 2.013 sum 14.416 -25.705 -0.095 29.471 Atomic orbital electron populations 1.70881 1.08324 1.29941 1.47546 1.27679 0.96363 1.07290 0.92008 0.82756 0.74180 0.69920 0.77947 1.19576 1.18338 1.21190 1.22461 0.95623 0.91692 1.56810 0.90432 1.18650 0.89426 0.85720 0.93252 1.46029 1.11062 1.05253 1.73251 1.21522 0.90044 0.84902 0.75531 1.90647 1.19405 1.85384 1.51851 1.21814 0.93898 0.86600 1.05092 1.60138 1.19302 1.00202 1.51712 1.22215 0.94396 0.88866 0.96282 0.90324 1.21134 1.02701 0.90122 0.97253 1.20664 0.97298 0.96209 0.94503 1.20969 1.00467 0.93150 0.99741 1.21266 0.98486 0.95228 0.97025 1.21567 0.99355 1.00649 0.95908 1.18278 0.96237 0.89553 0.89871 1.84778 1.40634 1.85987 1.21033 1.20976 1.00859 0.93588 0.98572 1.21089 1.00040 0.90514 0.99393 0.93715 0.99965 1.00136 0.75377 0.85945 0.89238 0.83093 0.90322 0.89048 0.84155 0.82765 0.83712 0.73508 0.89458 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.06 13.65 21.45 0.29 -57.76 16 2 C -0.04 -1.98 5.46 84.65 0.46 -1.52 16 3 Si 1.13 47.82 29.90 68.60 2.05 49.87 16 4 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.63 -34.38 9.28 25.60 0.24 -34.14 16 8 H 0.08 3.86 7.60 -2.91 -0.02 3.84 16 9 C 0.25 13.80 4.74 85.64 0.41 14.20 16 10 N -0.71 -29.22 5.55 -466.77 -2.59 -31.81 16 11 C 0.49 19.10 7.87 87.66 0.69 19.79 16 12 O -0.59 -29.00 16.20 -3.03 -0.05 -29.05 16 13 C 0.06 1.43 6.04 85.56 0.52 1.95 16 14 N -0.68 -17.13 5.92 -490.84 -2.91 -20.04 16 15 C 0.09 1.73 3.37 45.83 0.15 1.89 16 16 H 0.08 1.21 7.86 -2.39 -0.02 1.19 16 17 C -0.07 -1.40 6.48 30.52 0.20 -1.20 16 18 C -0.09 -1.64 6.14 -19.60 -0.12 -1.76 16 19 C -0.13 -1.97 10.04 22.32 0.22 -1.74 16 20 C -0.10 -1.39 10.04 22.23 0.22 -1.17 16 21 C -0.16 -2.41 9.98 22.34 0.22 -2.18 16 22 C 0.10 1.96 6.70 22.54 0.15 2.11 16 23 O -0.51 -8.61 13.45 -92.33 -1.24 -9.85 16 24 C -0.14 -2.79 6.12 -19.40 -0.12 -2.90 16 25 C -0.07 -1.42 6.19 30.62 0.19 -1.23 16 26 H 0.25 16.44 7.22 -92.71 -0.67 15.77 16 27 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 28 H -0.02 -1.17 8.01 -2.38 -0.02 -1.19 16 29 H 0.41 13.88 8.32 -92.71 -0.77 13.11 16 30 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.35 9.43 8.15 -89.69 -0.73 8.70 16 33 H 0.08 1.78 8.08 -2.39 -0.02 1.77 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.41 2.86 9.06 -74.06 -0.67 2.19 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.72 8.06 -2.39 -0.02 1.70 16 Total: -1.00 -77.74 341.49 -2.00 -79.73 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.99 Total: 26.81 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 3.44 Total: -7.91 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -5.20 Total: -109.61 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.29 Total: -38.90 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.87 kcal Total: -77.74 -2.00 -79.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759722189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.402 kcal (2) G-P(sol) polarization free energy of solvation -77.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds