Wall clock time and date at job start Tue Mar 31 2020 06:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 11 16 16 H 1.08995 * 110.73287 * 323.03673 * 15 14 13 17 17 C 1.54342 * 110.82271 * 86.45614 * 15 14 13 18 18 C 1.51387 * 105.17056 * 144.55477 * 17 15 14 19 19 C 1.38541 * 130.35742 * 162.83488 * 18 17 15 20 20 C 1.38131 * 120.33188 * 179.97438 * 19 18 17 21 21 C 1.38164 * 119.99659 * 359.97438 * 20 19 18 22 22 C 1.38605 * 119.87338 * 0.02562 * 21 20 19 23 23 O 1.35895 * 119.95456 * 179.97438 * 22 21 20 24 24 C 1.38122 * 109.75450 * 342.80870 * 18 17 15 25 25 C 1.51353 * 109.79065 * 0.02562 * 24 18 17 26 26 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 28 28 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 29 29 H 0.96996 * 119.99986 * 0.02562 * 10 9 7 30 30 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 31 31 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 32 32 H 1.00902 * 110.99923 * 303.95945 * 14 13 11 33 33 H 1.09003 * 110.30141 * 263.47509 * 17 15 14 34 34 H 1.09000 * 110.30855 * 25.52734 * 17 15 14 35 35 H 1.07993 * 119.83699 * 359.96429 * 19 18 17 36 36 H 1.07999 * 120.00120 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.06499 * 179.97438 * 21 20 19 38 38 H 0.96701 * 114.00198 * 89.99335 * 23 22 21 39 39 H 1.09000 * 110.30835 * 258.25892 * 25 24 18 40 40 H 1.09002 * 110.30560 * 136.10201 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0044 12 8 0.5613 -5.1050 0.0046 13 6 2.7330 -6.0288 0.0060 14 7 1.9985 -7.3011 0.0070 15 6 2.9230 -8.4426 0.0092 16 1 3.7993 -8.2307 -0.6033 17 6 3.3364 -8.8111 1.4498 18 6 3.4655 -10.3194 1.4515 19 6 4.0988 -11.1647 2.3481 20 6 4.0874 -12.5310 2.1459 21 6 3.4419 -13.0611 1.0453 22 6 2.8070 -12.2193 0.1456 23 8 2.1720 -12.7389 -0.9378 24 6 2.8192 -10.8445 0.3495 25 6 2.2117 -9.7260 -0.4694 26 1 -0.4851 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.1566 -3.4355 0.0029 30 1 3.3596 -5.9699 0.8959 31 1 3.3598 -5.9723 -0.8841 32 1 1.3617 -7.3503 0.7881 33 1 4.2920 -8.3495 1.6988 34 1 2.5689 -8.4948 2.1563 35 1 4.6039 -10.7533 3.2094 36 1 4.5832 -13.1850 2.8480 37 1 3.4327 -14.1292 0.8859 38 1 1.2416 -12.9524 -0.7834 39 1 1.1405 -9.6571 -0.2799 40 1 2.3990 -9.8894 -1.5307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759722190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:30 Heat of formation + Delta-G solvation = -58.497238 kcal Electronic energy + Delta-G solvation = -21668.810172 eV Core-core repulsion = 18255.003148 eV Total energy + Delta-G solvation = -3413.807024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71707 -38.92240 -37.79179 -36.35836 -34.21602 -33.44868 -32.31324 -30.59026 -29.01635 -27.44062 -27.38515 -25.25095 -22.51906 -22.16358 -21.43927 -20.91539 -19.68586 -18.26608 -17.30583 -16.45441 -16.25022 -15.92410 -15.56221 -15.48383 -15.02840 -14.90862 -14.42468 -14.14793 -13.70412 -13.49260 -13.09210 -12.87032 -12.82463 -12.40411 -12.29564 -12.19598 -11.92955 -11.64668 -11.50973 -11.37268 -11.26585 -11.00327 -10.86740 -10.78441 -10.32522 -9.41853 -9.06965 -8.87410 -8.80112 -8.73686 -8.43388 -7.87633 -6.16949 -4.24124 0.94998 1.01344 3.24714 3.28934 3.29581 3.30988 3.37086 3.69623 3.95366 4.11628 4.25424 4.37380 4.57798 4.69994 4.80516 4.88596 4.92768 5.17901 5.18876 5.21770 5.35510 5.44205 5.46007 5.51528 5.60732 5.61603 5.70199 5.85514 5.92788 6.06305 6.12140 6.29343 6.51976 6.87948 7.29537 7.33571 7.38320 7.43878 7.51755 7.66459 7.96852 8.62517 8.77864 9.10632 9.42541 10.93186 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043995 B = 0.002308 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.286587 B =12128.037947 C =12494.809233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.714 5.714 11 C 0.496 3.504 12 O -0.544 6.544 13 C 0.039 3.961 14 N -0.660 5.660 15 C 0.091 3.909 16 H 0.093 0.907 17 C -0.117 4.117 18 C -0.077 4.077 19 C -0.117 4.117 20 C -0.107 4.107 21 C -0.148 4.148 22 C 0.116 3.884 23 O -0.498 6.498 24 C -0.117 4.117 25 C -0.067 4.067 26 H 0.266 0.734 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.390 0.610 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.353 0.647 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.389 0.611 39 H 0.089 0.911 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.207 -24.496 3.712 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.422 6.422 13 C -0.093 4.093 14 N -0.292 5.292 15 C -0.020 4.020 16 H 0.111 0.889 17 C -0.156 4.156 18 C -0.077 4.077 19 C -0.135 4.135 20 C -0.125 4.125 21 C -0.167 4.167 22 C 0.072 3.928 23 O -0.309 6.309 24 C -0.118 4.118 25 C -0.105 4.105 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.222 0.778 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.174 0.826 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.245 0.755 39 H 0.107 0.893 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.594 -24.399 2.744 26.013 hybrid contribution 0.827 0.895 1.193 1.705 sum 9.422 -23.504 3.937 25.626 Atomic orbital electron populations 1.69963 1.06106 1.27428 1.48768 1.24958 0.94925 0.99458 0.94707 0.86469 0.79408 0.82312 0.78677 1.20054 1.21070 1.20089 1.21189 0.93216 0.90488 1.53360 0.91964 1.19086 0.88286 0.81901 0.97713 1.46448 1.11099 1.06121 1.72671 1.20344 0.89524 0.84249 0.77896 1.90668 1.16677 1.84708 1.50151 1.21882 0.95772 0.89295 1.02398 1.60141 1.17952 0.99656 1.51447 1.22285 0.95035 0.90565 0.94081 0.88856 1.21975 1.02829 0.91360 0.99418 1.20429 0.97072 0.95686 0.94535 1.20684 1.00352 0.93016 0.99458 1.20902 0.99339 0.94860 0.97368 1.21308 1.00845 0.99969 0.94551 1.18077 0.97582 0.89438 0.87725 1.84808 1.28210 1.83952 1.33887 1.20967 1.00096 0.93572 0.97161 1.20933 1.00407 0.89715 0.99424 0.92377 0.95509 0.95627 0.77777 0.92643 0.88432 0.82603 0.90362 0.89695 0.85991 0.85486 0.85354 0.75491 0.89282 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 10 N -0.71 -14.74 5.55 -61.47 -0.34 -15.08 16 11 C 0.50 9.63 7.87 -10.99 -0.09 9.54 16 12 O -0.54 -12.93 16.20 5.56 0.09 -12.84 16 13 C 0.04 0.52 6.03 -4.97 -0.03 0.49 16 14 N -0.66 -8.60 5.94 -106.51 -0.63 -9.23 16 15 C 0.09 0.94 3.36 -66.31 -0.22 0.72 16 16 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 17 C -0.12 -1.08 6.40 -26.84 -0.17 -1.25 16 18 C -0.08 -0.75 6.14 -104.22 -0.64 -1.39 16 19 C -0.12 -1.01 10.04 -39.51 -0.40 -1.41 16 20 C -0.11 -0.84 10.04 -39.65 -0.40 -1.24 16 21 C -0.15 -1.27 9.98 -39.47 -0.39 -1.67 16 22 C 0.12 1.15 6.70 -39.17 -0.26 0.88 16 23 O -0.50 -4.50 13.45 -19.41 -0.26 -4.76 16 24 C -0.12 -1.21 6.11 -104.06 -0.64 -1.85 16 25 C -0.07 -0.70 6.43 -26.86 -0.17 -0.87 16 26 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.39 6.80 8.32 -40.82 -0.34 6.46 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 32 H 0.35 4.77 7.89 -39.29 -0.31 4.46 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.79 7.64 -51.93 -0.40 0.39 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.39 1.77 9.06 45.56 0.41 2.18 16 39 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -33.73 342.31 -8.92 -42.65 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.80 Total: 8.50 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.86 Total: -4.81 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.24 Total: -49.65 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.17 Total: -17.60 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.73 -8.92 -42.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759722190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.845 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds