Wall clock time and date at job start Tue Mar 31 2020 06:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99713 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00169 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99922 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00037 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.46898 * 110.99888 * 180.02562 * 14 13 11 16 16 H 1.08995 * 110.73287 * 323.03673 * 15 14 13 17 17 C 1.54342 * 110.82271 * 86.45614 * 15 14 13 18 18 C 1.51387 * 105.17056 * 144.55477 * 17 15 14 19 19 C 1.38541 * 130.35742 * 162.83488 * 18 17 15 20 20 C 1.38131 * 120.33188 * 179.97438 * 19 18 17 21 21 C 1.38164 * 119.99659 * 359.97438 * 20 19 18 22 22 C 1.38605 * 119.87338 * 0.02562 * 21 20 19 23 23 O 1.35895 * 119.95456 * 179.97438 * 22 21 20 24 24 C 1.38122 * 109.75450 * 342.80870 * 18 17 15 25 25 C 1.51353 * 109.79065 * 0.02562 * 24 18 17 26 26 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47476 * 59.99992 * 9 7 2 28 28 H 1.09004 * 109.47043 * 300.00066 * 9 7 2 29 29 H 0.96996 * 119.99986 * 0.02562 * 10 9 7 30 30 H 1.09000 * 109.47247 * 60.00371 * 13 11 10 31 31 H 1.09001 * 109.47358 * 299.99798 * 13 11 10 32 32 H 1.00902 * 110.99923 * 303.95945 * 14 13 11 33 33 H 1.09003 * 110.30141 * 263.47509 * 17 15 14 34 34 H 1.09000 * 110.30855 * 25.52734 * 17 15 14 35 35 H 1.07993 * 119.83699 * 359.96429 * 19 18 17 36 36 H 1.07999 * 120.00120 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.06499 * 179.97438 * 21 20 19 38 38 H 0.96701 * 114.00198 * 89.99335 * 23 22 21 39 39 H 1.09000 * 110.30835 * 258.25892 * 25 24 18 40 40 H 1.09002 * 110.30560 * 136.10201 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 1.7538 -4.8834 0.0044 12 8 0.5613 -5.1050 0.0046 13 6 2.7330 -6.0288 0.0060 14 7 1.9985 -7.3011 0.0070 15 6 2.9230 -8.4426 0.0092 16 1 3.7993 -8.2307 -0.6033 17 6 3.3364 -8.8111 1.4498 18 6 3.4655 -10.3194 1.4515 19 6 4.0988 -11.1647 2.3481 20 6 4.0874 -12.5310 2.1459 21 6 3.4419 -13.0611 1.0453 22 6 2.8070 -12.2193 0.1456 23 8 2.1720 -12.7389 -0.9378 24 6 2.8192 -10.8445 0.3495 25 6 2.2117 -9.7260 -0.4694 26 1 -0.4851 0.8400 -0.0004 27 1 0.6240 -2.5576 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.1566 -3.4355 0.0029 30 1 3.3596 -5.9699 0.8959 31 1 3.3598 -5.9723 -0.8841 32 1 1.3617 -7.3503 0.7881 33 1 4.2920 -8.3495 1.6988 34 1 2.5689 -8.4948 2.1563 35 1 4.6039 -10.7533 3.2094 36 1 4.5832 -13.1850 2.8480 37 1 3.4327 -14.1292 0.8859 38 1 1.2416 -12.9524 -0.7834 39 1 1.1405 -9.6571 -0.2799 40 1 2.3990 -9.8894 -1.5307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759722190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:29 Heat of formation + Delta-G solvation = -84.911336 kcal Electronic energy + Delta-G solvation = -21669.955573 eV Core-core repulsion = 18255.003148 eV Total energy + Delta-G solvation = -3414.952425 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.42942 -40.46071 -38.61514 -37.14375 -36.10264 -34.46488 -34.26084 -31.26911 -30.25721 -28.94204 -28.13485 -26.57825 -24.29886 -23.02115 -22.10734 -21.73898 -21.33721 -18.98961 -18.93243 -17.67402 -17.34690 -17.03805 -16.80456 -16.59877 -16.30802 -16.03856 -15.80947 -15.24822 -14.84961 -14.54379 -14.19048 -14.08234 -13.90315 -13.79442 -13.57374 -13.14878 -13.13301 -12.92390 -12.83170 -12.66002 -12.35677 -12.23261 -12.13066 -12.00033 -11.50362 -11.44414 -10.78429 -10.72052 -9.81371 -9.53705 -9.48510 -9.39454 -8.28255 -6.44996 0.29848 0.34767 1.43698 1.47793 1.55959 1.80762 2.29067 2.48995 2.65429 3.06444 3.16732 3.34503 3.45411 3.73536 3.94316 4.04765 4.13105 4.17522 4.23802 4.38805 4.51128 4.55162 4.59940 4.72758 4.80883 4.89980 4.96976 5.08262 5.13374 5.17755 5.25586 5.42310 5.48600 5.49920 5.61384 5.70192 5.85953 5.92025 5.98774 6.29406 6.66345 6.84743 6.95845 7.24598 7.53908 8.83697 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043995 B = 0.002308 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.286587 B =12128.037947 C =12494.809233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.709 5.709 11 C 0.492 3.508 12 O -0.593 6.593 13 C 0.056 3.944 14 N -0.677 5.677 15 C 0.096 3.904 16 H 0.104 0.896 17 C -0.110 4.110 18 C -0.087 4.087 19 C -0.124 4.124 20 C -0.104 4.104 21 C -0.155 4.155 22 C 0.103 3.897 23 O -0.512 6.512 24 C -0.137 4.137 25 C -0.064 4.064 26 H 0.268 0.732 27 H -0.015 1.015 28 H -0.013 1.013 29 H 0.409 0.591 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.348 0.652 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.140 0.860 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.406 0.594 39 H 0.078 0.922 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.234 -25.016 4.436 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.360 5.360 11 C 0.279 3.721 12 O -0.474 6.474 13 C -0.076 4.076 14 N -0.309 5.309 15 C -0.014 4.014 16 H 0.122 0.878 17 C -0.149 4.149 18 C -0.088 4.088 19 C -0.142 4.142 20 C -0.122 4.122 21 C -0.173 4.173 22 C 0.059 3.941 23 O -0.325 6.325 24 C -0.138 4.138 25 C -0.102 4.102 26 H 0.077 0.923 27 H 0.003 0.997 28 H 0.005 0.995 29 H 0.245 0.755 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.162 0.838 38 H 0.264 0.736 39 H 0.097 0.903 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.669 -24.961 3.466 27.771 hybrid contribution -0.176 0.922 0.961 1.343 sum 11.494 -24.039 4.427 27.011 Atomic orbital electron populations 1.70135 1.08297 1.28608 1.49972 1.26088 0.95783 1.03977 0.93909 0.85202 0.77888 0.76572 0.79521 1.18672 1.21223 1.18558 1.21602 0.94344 0.90579 1.52865 0.89705 1.18506 0.88726 0.84417 0.93948 1.46175 1.11196 1.05527 1.73066 1.21458 0.89963 0.84966 0.75714 1.90646 1.19426 1.85409 1.51949 1.21802 0.94038 0.86635 1.05079 1.60122 1.18866 1.00240 1.51644 1.22270 0.94637 0.89285 0.95227 0.87831 1.21891 1.03424 0.91293 0.98294 1.20585 0.97451 0.96036 0.94734 1.20972 1.00158 0.93338 0.99763 1.21259 0.98529 0.95052 0.97352 1.21568 1.00532 1.00750 0.94499 1.18303 0.98066 0.89600 0.88140 1.84753 1.29654 1.83918 1.34127 1.21031 1.01151 0.93837 0.97818 1.20846 0.99932 0.90277 0.99105 0.92281 0.99731 0.99532 0.75520 0.89241 0.85976 0.83215 0.88837 0.89942 0.84173 0.82839 0.83791 0.73582 0.90319 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.99 42.09 29.54 68.60 2.03 44.12 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.56 -30.08 9.28 25.60 0.24 -29.84 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.64 5.43 85.63 0.46 15.11 16 10 N -0.71 -29.24 5.55 -466.78 -2.59 -31.83 16 11 C 0.49 19.09 7.87 87.66 0.69 19.78 16 12 O -0.59 -29.22 16.20 -3.04 -0.05 -29.27 16 13 C 0.06 1.39 6.03 85.56 0.52 1.91 16 14 N -0.68 -16.99 5.94 -490.88 -2.92 -19.91 16 15 C 0.10 1.84 3.36 45.83 0.15 1.99 16 16 H 0.10 1.79 7.90 -2.39 -0.02 1.77 16 17 C -0.11 -1.82 6.40 30.52 0.20 -1.63 16 18 C -0.09 -1.58 6.14 -19.60 -0.12 -1.70 16 19 C -0.12 -1.87 10.04 22.32 0.22 -1.64 16 20 C -0.10 -1.39 10.04 22.23 0.22 -1.17 16 21 C -0.16 -2.40 9.98 22.34 0.22 -2.17 16 22 C 0.10 1.96 6.70 22.54 0.15 2.11 16 23 O -0.51 -9.01 13.45 -92.37 -1.24 -10.25 16 24 C -0.14 -2.75 6.11 -19.50 -0.12 -2.87 16 25 C -0.06 -1.32 6.43 30.51 0.20 -1.12 16 26 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 27 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 29 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 30 H 0.09 1.68 8.13 -2.39 -0.02 1.66 16 31 H 0.12 2.51 8.09 -2.39 -0.02 2.49 16 32 H 0.35 9.35 7.89 -89.69 -0.71 8.65 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.41 7.64 -2.39 -0.02 1.39 16 35 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 38 H 0.41 3.58 9.06 -74.06 -0.67 2.91 16 39 H 0.08 1.73 8.08 -2.39 -0.02 1.72 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -75.83 342.31 -2.06 -77.88 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: -1.07 Total: 26.00 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 3.50 Total: -0.68 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.22 Total: -107.81 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -1.29 Total: -39.52 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -75.83 -2.06 -77.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759722190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.027 kcal (2) G-P(sol) polarization free energy of solvation -75.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds