Wall clock time and date at job start Tue Mar 31 2020 05:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50690 * 120.00478 * 2 1 4 4 C 1.52997 * 109.47551 * 125.00042 * 3 2 1 5 5 C 1.52995 * 109.47477 * 180.02562 * 4 3 2 6 6 O 1.45208 * 109.47100 * 179.97438 * 5 4 3 7 7 C 1.34229 * 116.99784 * 180.02562 * 6 5 4 8 8 O 1.20830 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.07998 * 119.99407 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00501 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99534 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47214 * 5.00006 * 3 2 1 29 29 H 1.08998 * 109.47245 * 245.00126 * 3 2 1 30 30 H 1.09002 * 109.46891 * 59.99766 * 4 3 2 31 31 H 1.09003 * 109.47336 * 300.00446 * 4 3 2 32 32 H 1.09002 * 109.47268 * 59.99976 * 5 4 3 33 33 H 1.08998 * 109.47265 * 300.00051 * 5 4 3 34 34 H 1.09002 * 109.46571 * 59.99926 * 9 7 6 35 35 H 1.08992 * 109.46782 * 300.00190 * 9 7 6 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 39 39 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7998 2.6581 1.1819 6 8 4.7214 2.6849 2.3037 7 6 5.4734 3.7873 2.4484 8 8 5.3648 4.6999 1.6640 9 6 6.4523 3.8872 3.5899 10 6 7.1644 5.2138 3.5262 11 6 8.3421 5.3321 2.8105 12 6 8.9988 6.5475 2.7501 13 6 8.4767 7.6491 3.3995 14 6 7.2977 7.5323 4.1235 15 8 6.7853 8.6117 4.7677 16 6 7.5297 9.7359 4.7662 17 1 8.4482 9.7745 4.1993 18 6 7.1161 10.8423 5.4924 19 7 5.9976 10.7950 6.1832 20 14 8.1479 12.3995 5.4908 21 1 8.2734 12.9087 4.1015 22 1 7.4930 13.4281 6.3382 23 1 9.4979 12.0994 6.0318 24 6 6.6407 6.3098 4.1828 25 1 -0.5399 0.9354 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8500 -0.9354 0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4024 -0.9314 30 1 3.7400 0.5063 1.0920 31 1 2.4774 1.2354 2.1130 32 1 3.0946 3.4845 1.2717 33 1 4.3575 2.7561 0.2506 34 1 7.1804 3.0796 3.5157 35 1 5.9166 3.8078 4.5357 36 1 8.7497 4.4733 2.2977 37 1 9.9183 6.6366 2.1909 38 1 8.9874 8.5994 3.3477 39 1 5.7085 11.5689 6.6915 40 1 5.7216 6.2167 4.7420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760639627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:42 Heat of formation + Delta-G solvation = -102.247414 kcal Electronic energy + Delta-G solvation = -21444.510358 eV Core-core repulsion = 17996.513433 eV Total energy + Delta-G solvation = -3447.996925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63008 -40.67693 -38.55601 -37.72525 -36.57558 -34.36371 -33.66414 -32.63098 -30.94164 -29.00233 -27.39299 -26.91098 -23.53325 -23.15818 -22.58900 -21.77221 -20.64170 -19.50719 -18.79921 -18.67488 -17.81189 -17.24174 -16.75762 -16.53474 -16.16267 -16.12356 -15.54019 -15.46188 -14.99138 -14.74783 -14.44172 -14.10064 -14.02516 -13.85547 -13.59453 -13.13138 -12.97246 -12.86717 -12.53940 -12.49873 -12.41020 -12.24902 -12.14385 -12.08051 -11.84692 -11.52703 -11.44828 -11.22272 -10.80368 -10.23052 -9.70724 -9.01054 -8.47321 -6.16087 0.42117 0.72704 1.20750 1.34104 1.36898 1.45196 1.50780 1.77768 2.17570 2.83088 3.15486 3.39603 3.65918 3.79200 3.87989 4.00193 4.08378 4.17800 4.27468 4.29307 4.37624 4.40391 4.52523 4.55294 4.59679 4.61337 4.72005 4.80942 5.00905 5.03724 5.11363 5.12705 5.21662 5.27470 5.45219 5.61536 5.69321 5.71938 5.76667 5.89370 6.01622 6.20376 6.76483 6.96932 7.77842 8.75873 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.002524 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.575779 B =11092.756375 C =11801.540075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C -0.093 4.093 4 C -0.104 4.104 5 C 0.059 3.941 6 O -0.355 6.355 7 C 0.465 3.535 8 O -0.537 6.537 9 C -0.062 4.062 10 C -0.037 4.037 11 C -0.177 4.177 12 C -0.073 4.073 13 C -0.242 4.242 14 C 0.110 3.890 15 O -0.233 6.233 16 C -0.415 4.415 17 H 0.102 0.898 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.190 4.190 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -21.523 -10.099 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.177 4.177 3 C -0.130 4.130 4 C -0.141 4.141 5 C -0.015 4.015 6 O -0.272 6.272 7 C 0.309 3.691 8 O -0.426 6.426 9 C -0.099 4.099 10 C -0.038 4.038 11 C -0.195 4.195 12 C -0.091 4.091 13 C -0.261 4.261 14 C 0.060 3.940 15 O -0.140 6.140 16 C -0.491 4.491 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.180 1.180 24 C -0.210 4.210 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.591 -21.113 -10.104 23.549 hybrid contribution -0.071 1.320 0.048 1.323 sum -2.663 -19.793 -10.057 22.360 Atomic orbital electron populations 1.24051 0.96143 1.02508 1.00797 1.22975 0.96143 0.98396 1.00168 1.20666 0.97896 0.96258 0.98163 1.21456 0.97870 0.94911 0.99859 1.23271 0.90807 1.00157 0.87250 1.86471 1.50052 1.40816 1.49876 1.24064 0.79822 0.79250 0.85922 1.90721 1.66663 1.40045 1.45203 1.20395 0.96805 0.96460 0.96231 1.19142 0.95203 0.93136 0.96278 1.21021 0.96660 0.98654 1.03161 1.21156 0.99539 0.91719 0.96670 1.21340 0.98757 1.00976 1.05052 1.19873 0.93359 0.88315 0.92431 1.83938 1.44853 1.18478 1.66762 1.21793 1.06594 0.88994 1.31715 0.88121 1.26627 0.98251 1.02562 0.94766 1.70181 1.23190 1.32256 1.30351 0.84632 0.77541 0.74653 0.79271 1.18291 1.19564 1.17968 1.20246 1.02106 0.91061 1.07552 0.88656 0.87398 0.86160 0.91446 0.89992 0.89454 0.90666 0.92304 0.91077 0.82600 0.85013 0.83101 0.83409 0.86264 0.91836 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.25 14.32 67.78 0.97 -1.28 16 2 C -0.16 -1.82 9.52 25.64 0.24 -1.58 16 3 C -0.09 -1.15 5.66 29.84 0.17 -0.98 16 4 C -0.10 -1.45 5.58 30.59 0.17 -1.28 16 5 C 0.06 1.19 5.47 71.98 0.39 1.58 16 6 O -0.36 -8.31 10.22 -51.40 -0.53 -8.84 16 7 C 0.47 13.16 7.95 71.24 0.57 13.73 16 8 O -0.54 -20.07 15.78 21.95 0.35 -19.72 16 9 C -0.06 -1.48 5.94 29.10 0.17 -1.31 16 10 C -0.04 -1.28 4.37 -19.88 -0.09 -1.37 16 11 C -0.18 -5.60 9.70 22.30 0.22 -5.39 16 12 C -0.07 -2.58 10.04 22.25 0.22 -2.35 16 13 C -0.24 -10.95 9.17 22.39 0.21 -10.75 16 14 C 0.11 5.74 6.65 22.58 0.15 5.89 16 15 O -0.23 -14.56 9.76 -22.74 -0.22 -14.78 16 16 C -0.41 -24.85 9.49 67.92 0.64 -24.21 16 17 H 0.10 5.52 5.21 -2.91 -0.02 5.51 16 18 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 19 N -0.92 -57.78 13.67 21.61 0.30 -57.48 16 20 Si 1.02 43.72 29.55 68.60 2.03 45.74 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 24 C -0.19 -8.48 9.65 22.39 0.22 -8.26 16 25 H 0.10 1.08 7.84 -2.91 -0.02 1.06 16 26 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 27 H 0.12 1.11 8.06 -2.91 -0.02 1.08 16 28 H 0.07 0.89 7.79 -2.39 -0.02 0.87 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 33 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.16 2.36 8.09 -2.39 -0.02 2.34 16 35 H 0.13 2.69 8.08 -2.39 -0.02 2.67 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 37 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 38 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 39 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 40 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -78.21 351.23 7.67 -70.54 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.02 Total: 23.08 kcal Atomic # 6 Polarization: -43.25 SS G_CDS: 4.72 Total: -38.53 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 0.30 Total: -57.48 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.40 Total: -43.35 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -78.21 7.67 -70.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760639627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.709 kcal (2) G-P(sol) polarization free energy of solvation -78.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds