Wall clock time and date at job start Tue Mar 31 2020 06:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.32816 * 2 1 4 4 C 1.54477 * 110.37197 * 122.25094 * 2 1 3 5 5 C 1.54508 * 104.06175 * 142.92513 * 4 2 1 6 6 C 1.54480 * 104.06198 * 359.97438 * 5 4 2 7 7 H 1.09001 * 110.36850 * 94.96757 * 6 5 4 8 8 C 1.52997 * 110.37099 * 217.19083 * 6 5 4 9 9 O 1.45200 * 109.47177 * 185.00389 * 8 6 5 10 10 C 1.34703 * 117.00374 * 180.02562 * 9 8 6 11 11 O 1.21461 * 119.99757 * 0.02562 * 10 9 8 12 12 C 1.47761 * 120.00144 * 179.97438 * 10 9 8 13 13 C 1.39966 * 120.03417 * 359.97438 * 12 10 9 14 14 C 1.38313 * 120.35930 * 179.97438 * 13 12 10 15 15 C 1.37759 * 120.41607 * 0.02598 * 14 13 12 16 16 C 1.40761 * 120.05171 * 0.02562 * 15 14 13 17 17 C 1.41437 * 120.17575 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99981 * 24.34008 * 17 16 15 19 19 C 1.39930 * 119.99687 * 204.34843 * 17 16 15 20 20 N 1.30826 * 120.00381 * 17.72361 * 19 17 16 21 21 Si 1.86807 * 119.99999 * 197.72516 * 19 17 16 22 22 H 1.48500 * 109.46894 * 89.99711 * 21 19 17 23 23 H 1.48491 * 109.47141 * 209.99977 * 21 19 17 24 24 H 1.48505 * 109.46889 * 329.99698 * 21 19 17 25 25 C 1.39057 * 120.03033 * 179.72586 * 12 10 9 26 26 O 1.44418 * 104.80469 * 336.02516 * 6 5 4 27 27 H 1.09001 * 109.47410 * 297.75061 * 1 2 3 28 28 H 1.08998 * 109.46880 * 57.75158 * 1 2 3 29 29 H 1.08999 * 109.46852 * 177.74744 * 1 2 3 30 30 H 1.08997 * 110.51118 * 24.27737 * 4 2 1 31 31 H 1.09000 * 110.51032 * 261.56922 * 4 2 1 32 32 H 1.09000 * 110.50445 * 241.35638 * 5 4 2 33 33 H 1.08998 * 110.51455 * 118.64630 * 5 4 2 34 34 H 1.09005 * 109.47383 * 65.00497 * 8 6 5 35 35 H 1.08996 * 109.47327 * 305.00278 * 8 6 5 36 36 H 1.07999 * 119.81961 * 359.97438 * 13 12 10 37 37 H 1.07996 * 119.79560 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.97449 * 179.97438 * 15 14 13 39 39 H 0.97002 * 120.00596 * 180.02562 * 20 19 17 40 40 H 1.07994 * 120.20866 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3195 -1.5026 0.6881 6 6 3.3895 -1.0849 -0.7975 7 1 4.0548 -0.2303 -0.9204 8 6 3.8649 -2.2569 -1.6584 9 8 4.0371 -1.8116 -3.0296 10 6 4.4544 -2.7295 -3.9229 11 8 4.6682 -3.8707 -3.5662 12 6 4.6510 -2.3483 -5.3369 13 6 4.4034 -1.0338 -5.7490 14 6 4.5857 -0.6695 -7.0708 15 6 5.0125 -1.5956 -7.9970 16 6 5.2657 -2.9227 -7.6018 17 6 5.7045 -3.8756 -8.5504 18 1 6.2147 -3.5512 -9.4453 19 6 5.4773 -5.2385 -8.3295 20 7 4.5809 -5.6192 -7.4560 21 14 6.4541 -6.5147 -9.2818 22 1 7.6901 -6.8531 -8.5315 23 1 5.6311 -7.7381 -9.4576 24 1 6.8177 -5.9671 -10.6135 25 6 5.0873 -3.2939 -6.2584 26 8 2.0346 -0.7240 -1.1435 27 1 -0.3634 0.4785 0.9095 28 1 -0.3633 0.5483 -0.8691 29 1 -0.3633 -1.0269 -0.0404 30 1 1.3284 -1.4917 1.5775 31 1 2.3411 -0.0820 2.0223 32 1 3.1987 -2.5823 0.7757 33 1 4.2116 -1.1727 1.2205 34 1 3.1239 -3.0557 -1.6261 35 1 4.8155 -2.6275 -1.2747 36 1 4.0681 -0.3000 -5.0311 37 1 4.3923 0.3474 -7.3788 38 1 5.1521 -1.3035 -9.0274 39 1 4.4236 -6.5640 -7.3025 40 1 5.2839 -4.3083 -5.9444 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762170070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:13 Heat of formation + Delta-G solvation = -142.504522 kcal Electronic energy + Delta-G solvation = -22374.386192 eV Core-core repulsion = 18924.643588 eV Total energy + Delta-G solvation = -3449.742604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54971 -40.49224 -39.17533 -37.43315 -35.63321 -33.41395 -33.23095 -32.17495 -31.38134 -29.38254 -27.29072 -25.58442 -24.17276 -22.86866 -22.52744 -21.91131 -21.44449 -19.64673 -18.34185 -17.85283 -17.76199 -17.26654 -16.80804 -16.52107 -16.46984 -15.91689 -15.23054 -14.97916 -14.74161 -14.42437 -14.37054 -14.18883 -13.64983 -13.52090 -13.20732 -13.01223 -12.85567 -12.82662 -12.68679 -12.57826 -12.34393 -12.22026 -12.01186 -11.92351 -11.66444 -11.56620 -11.54334 -11.28085 -11.11035 -10.76741 -9.63593 -9.46396 -8.69428 -6.41010 0.10616 0.95202 1.37513 1.46106 1.52265 1.62608 1.78314 2.18820 2.70826 2.75461 3.49167 3.60046 3.61671 3.89738 3.91965 4.00160 4.06928 4.28259 4.31938 4.35206 4.42168 4.50736 4.61479 4.63456 4.80443 4.85461 4.91523 5.00306 5.03314 5.06884 5.11664 5.18196 5.25305 5.26905 5.27236 5.43154 5.80315 5.87832 5.92996 5.99627 6.21105 6.51560 6.77890 6.85066 6.87663 8.28249 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.003262 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.772156 B = 8580.578891 C = 9155.077199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 H 0.079 0.921 4 C -0.142 4.142 5 C -0.143 4.143 6 C 0.079 3.921 7 H 0.089 0.911 8 C 0.064 3.936 9 O -0.347 6.347 10 C 0.515 3.485 11 O -0.547 6.547 12 C -0.130 4.130 13 C -0.182 4.182 14 C -0.098 4.098 15 C -0.203 4.203 16 C 0.066 3.934 17 C -0.493 4.493 18 H 0.089 0.911 19 C 0.029 3.971 20 N -0.827 5.827 21 Si 0.986 3.014 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.249 1.249 25 C -0.123 4.123 26 O -0.396 6.396 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.288 0.712 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 9.334 15.585 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 H 0.097 0.903 4 C -0.180 4.180 5 C -0.181 4.181 6 C 0.021 3.979 7 H 0.106 0.894 8 C -0.010 4.010 9 O -0.264 6.264 10 C 0.363 3.637 11 O -0.439 6.439 12 C -0.131 4.131 13 C -0.202 4.202 14 C -0.116 4.116 15 C -0.223 4.223 16 C 0.064 3.936 17 C -0.522 4.522 18 H 0.107 0.893 19 C -0.186 4.186 20 N -0.453 5.453 21 Si 0.806 3.194 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.173 1.173 25 C -0.142 4.142 26 O -0.317 6.317 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.146 0.854 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.720 8.763 15.634 18.304 hybrid contribution 0.300 -1.074 -0.242 1.141 sum -3.420 7.689 15.392 17.542 Atomic orbital electron populations 1.21830 0.92504 1.02620 1.03319 1.23298 0.96161 0.95955 0.84800 0.90309 1.23007 0.96869 1.00074 0.98045 1.22945 1.00725 1.02239 0.92204 1.23090 0.85187 0.95843 0.93767 0.89351 1.23387 1.02063 0.97734 0.77817 1.86592 1.78004 1.41312 1.20483 1.21721 0.72143 0.82590 0.87266 1.90725 1.50097 1.22111 1.80986 1.19097 1.08826 0.96726 0.88442 1.20930 1.08183 0.93949 0.97121 1.20952 0.98792 0.99417 0.92409 1.21512 1.07379 0.94133 0.99263 1.17912 0.90561 0.93458 0.91667 1.19876 1.34540 0.91389 1.06371 0.89283 1.26899 0.94037 1.01931 0.95731 1.69879 1.25849 1.19296 1.30232 0.85138 0.78407 0.76494 0.79313 1.19000 1.19498 1.17268 1.21467 1.01906 0.98140 0.92717 1.89252 1.26963 1.75167 1.40289 0.88516 0.92696 0.92693 0.89961 0.87782 0.90300 0.87463 0.91848 0.88762 0.85427 0.84109 0.86470 0.90142 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.52 71.98 0.69 -1.65 16 2 C 0.05 1.01 3.92 31.10 0.12 1.13 16 3 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 4 C -0.14 -1.89 6.63 31.61 0.21 -1.68 16 5 C -0.14 -2.28 6.63 31.61 0.21 -2.07 16 6 C 0.08 1.90 3.58 31.10 0.11 2.01 16 7 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 8 C 0.06 2.00 5.08 71.98 0.37 2.36 16 9 O -0.35 -13.95 9.46 -55.42 -0.52 -14.47 16 10 C 0.51 24.69 7.90 70.34 0.56 25.25 16 11 O -0.55 -28.60 16.12 19.96 0.32 -28.28 16 12 C -0.13 -6.58 5.87 -20.14 -0.12 -6.70 16 13 C -0.18 -8.09 9.62 22.71 0.22 -7.87 16 14 C -0.10 -4.10 10.01 22.17 0.22 -3.88 16 15 C -0.20 -9.58 9.78 22.77 0.22 -9.36 16 16 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 17 C -0.49 -26.52 9.05 23.47 0.21 -26.31 16 18 H 0.09 4.48 7.91 -2.91 -0.02 4.46 16 19 C 0.03 1.50 5.14 85.25 0.44 1.94 16 20 N -0.83 -45.86 10.96 21.82 0.24 -45.62 16 21 Si 0.99 39.10 29.60 68.60 2.03 41.13 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 24 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 25 C -0.12 -6.90 8.24 23.02 0.19 -6.71 16 26 O -0.40 -11.18 11.04 -148.98 -1.64 -12.83 16 27 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.04 7.87 -2.39 -0.02 1.02 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.28 7.87 -2.39 -0.02 1.26 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.13 5.01 7.59 -2.91 -0.02 4.99 16 37 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.12 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 40 H 0.11 6.51 5.75 -2.91 -0.02 6.49 16 Total: -1.00 -68.41 339.70 4.98 -63.43 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 1.03 Total: 26.68 kcal Atomic # 6 Polarization: -33.57 SS G_CDS: 3.53 Total: -30.05 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.24 Total: -45.62 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.85 Total: -55.58 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.41 4.98 -63.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762170070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.072 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds