Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.82595 * 2 1 4 4 C 1.54377 * 109.83639 * 239.11065 * 2 1 3 5 5 C 1.55302 * 102.25626 * 219.13308 * 4 2 1 6 6 C 1.54951 * 100.98260 * 34.10787 * 5 4 2 7 7 H 1.09005 * 110.30800 * 82.49362 * 6 5 4 8 8 C 1.52992 * 110.31067 * 204.66626 * 6 5 4 9 9 O 1.45205 * 109.47182 * 185.00002 * 8 6 5 10 10 C 1.34703 * 117.00088 * 180.02562 * 9 8 6 11 11 O 1.21471 * 120.00218 * 359.97438 * 10 9 8 12 12 C 1.47769 * 120.00092 * 180.02562 * 10 9 8 13 13 C 1.39971 * 120.02688 * 359.97438 * 12 10 9 14 14 C 1.38317 * 120.35019 * 180.02562 * 13 12 10 15 15 C 1.37759 * 120.41983 * 359.97352 * 14 13 12 16 16 C 1.40754 * 120.04974 * 0.02562 * 15 14 13 17 17 C 1.41440 * 120.17408 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99873 * 150.19570 * 17 16 15 19 19 C 1.39938 * 120.00271 * 330.19257 * 17 16 15 20 20 N 1.30822 * 120.00078 * 161.72258 * 19 17 16 21 21 Si 1.86801 * 119.99594 * 341.72265 * 19 17 16 22 22 H 1.48511 * 109.46939 * 95.41381 * 21 19 17 23 23 H 1.48498 * 109.47069 * 215.40951 * 21 19 17 24 24 H 1.48499 * 109.47483 * 335.41715 * 21 19 17 25 25 C 1.39049 * 120.03411 * 179.72114 * 12 10 9 26 26 O 1.43242 * 109.83074 * 120.97447 * 2 1 3 27 27 H 1.09008 * 109.47001 * 180.88634 * 1 2 3 28 28 H 1.08996 * 109.47904 * 300.89019 * 1 2 3 29 29 H 1.09003 * 109.47288 * 60.89096 * 1 2 3 30 30 H 1.08994 * 110.85153 * 100.93697 * 4 2 1 31 31 H 1.09004 * 111.01823 * 337.39758 * 4 2 1 32 32 H 1.08997 * 111.12819 * 152.05108 * 5 4 2 33 33 H 1.09003 * 111.12187 * 276.17399 * 5 4 2 34 34 H 1.09005 * 109.47380 * 304.99936 * 8 6 5 35 35 H 1.09000 * 109.47572 * 64.99820 * 8 6 5 36 36 H 1.07999 * 119.82331 * 359.97438 * 13 12 10 37 37 H 1.07997 * 119.78979 * 179.97438 * 14 13 12 38 38 H 1.07993 * 119.97475 * 180.02562 * 15 14 13 39 39 H 0.97005 * 119.99769 * 179.97438 * 20 19 17 40 40 H 1.08006 * 120.20335 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8996 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2462 5 6 3.2730 -1.5216 -0.6778 6 6 2.7758 -1.8450 0.7537 7 1 2.1415 -2.7314 0.7426 8 6 3.9643 -2.0528 1.6944 9 8 3.4820 -2.4699 2.9989 10 6 4.4087 -2.6960 3.9500 11 8 5.5875 -2.5492 3.6965 12 6 3.9913 -3.1237 5.3015 13 6 2.6331 -3.2935 5.5941 14 6 2.2349 -3.6931 6.8570 15 6 3.1697 -3.9291 7.8410 16 6 4.5401 -3.7637 7.5656 17 6 5.5021 -4.0047 8.5741 18 1 6.4896 -4.3509 8.3067 19 6 5.1744 -3.7947 9.9182 20 7 5.9005 -4.3380 10.8611 21 14 3.7002 -2.7385 10.3661 22 1 2.5178 -3.6086 10.5906 23 1 3.9959 -1.9758 11.6054 24 1 3.4147 -1.7916 9.2583 25 6 4.9477 -3.3629 6.2821 26 8 2.0159 -0.6935 1.1553 27 1 -0.3633 -1.0276 0.0159 28 1 -0.3635 0.5276 0.8818 29 1 -0.3634 0.4999 -0.8979 30 1 2.3672 -0.0410 -2.0165 31 1 1.3028 -1.4336 -1.6346 32 1 3.4572 -2.4339 -1.2451 33 1 4.1622 -0.8917 -0.6518 34 1 4.6204 -2.8219 1.2867 35 1 4.5173 -1.1186 1.7931 36 1 1.8921 -3.1107 4.8300 37 1 1.1845 -3.8210 7.0731 38 1 2.8509 -4.2413 8.8245 39 1 5.6736 -4.1920 11.7929 40 1 5.9971 -3.2376 6.0596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762170071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -141.681716 kcal Electronic energy + Delta-G solvation = -22277.423188 eV Core-core repulsion = 18827.716264 eV Total energy + Delta-G solvation = -3449.706924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60659 -40.54411 -39.40650 -37.48854 -35.60987 -33.41224 -33.25446 -32.55746 -31.89537 -29.35709 -27.21990 -25.73858 -24.43521 -22.59681 -22.54609 -21.95851 -21.63496 -19.69633 -18.47860 -18.17583 -17.91431 -17.37596 -16.97419 -16.59329 -16.51385 -15.60710 -15.44481 -15.05564 -14.62669 -14.56973 -14.47768 -14.31575 -13.89635 -13.60888 -13.45299 -13.23563 -12.90648 -12.84192 -12.72965 -12.68493 -12.41295 -12.32154 -11.88356 -11.82558 -11.74655 -11.63761 -11.61122 -11.47354 -11.07003 -10.53503 -9.75244 -9.66153 -8.93340 -6.57443 -0.07307 0.69422 1.25716 1.40960 1.46685 1.58234 1.63934 2.10978 2.57251 2.71460 3.37390 3.45659 3.56774 3.85528 3.93487 3.99448 4.09363 4.21867 4.30391 4.34379 4.38450 4.40713 4.45550 4.56849 4.74948 4.81352 4.83361 4.84880 4.88350 5.01001 5.04447 5.10384 5.22563 5.25518 5.35208 5.35389 5.60584 5.67040 5.79425 6.05694 6.11414 6.25673 6.58986 6.69710 6.73451 8.15298 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030985 B = 0.003178 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.448640 B = 8807.089991 C = 9377.867404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.060 3.940 3 H 0.081 0.919 4 C -0.140 4.140 5 C -0.143 4.143 6 C 0.083 3.917 7 H 0.087 0.913 8 C 0.060 3.940 9 O -0.344 6.344 10 C 0.517 3.483 11 O -0.543 6.543 12 C -0.105 4.105 13 C -0.166 4.166 14 C -0.085 4.085 15 C -0.214 4.214 16 C 0.065 3.935 17 C -0.485 4.485 18 H 0.055 0.945 19 C 0.048 3.952 20 N -0.845 5.845 21 Si 0.962 3.038 22 H -0.245 1.245 23 H -0.276 1.276 24 H -0.253 1.253 25 C -0.157 4.157 26 O -0.400 6.400 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.112 0.888 39 H 0.296 0.704 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 6.744 -21.511 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 H 0.099 0.901 4 C -0.178 4.178 5 C -0.181 4.181 6 C 0.025 3.975 7 H 0.105 0.895 8 C -0.014 4.014 9 O -0.261 6.261 10 C 0.365 3.635 11 O -0.435 6.435 12 C -0.106 4.106 13 C -0.185 4.185 14 C -0.103 4.103 15 C -0.233 4.233 16 C 0.062 3.938 17 C -0.514 4.514 18 H 0.073 0.927 19 C -0.167 4.167 20 N -0.470 5.470 21 Si 0.784 3.216 22 H -0.169 1.169 23 H -0.202 1.202 24 H -0.177 1.177 25 C -0.177 4.177 26 O -0.320 6.320 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.107 0.893 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.860 6.787 -21.161 25.190 hybrid contribution 0.540 0.162 0.520 0.767 sum -11.319 6.949 -20.641 24.545 Atomic orbital electron populations 1.22128 0.94127 1.02622 1.02807 1.23001 0.95189 0.96525 0.85021 0.90149 1.23184 0.97256 0.99975 0.97358 1.23273 0.99406 1.02872 0.92535 1.23106 0.91073 0.90346 0.92956 0.89535 1.23525 0.97403 1.00926 0.79543 1.86595 1.39041 1.78313 1.22116 1.21542 0.83435 0.72820 0.85747 1.90744 1.19949 1.50520 1.82300 1.18986 0.95696 1.06506 0.89451 1.21081 0.93344 1.06128 0.97950 1.21058 0.99754 0.97218 0.92278 1.21481 0.93142 1.08656 1.00058 1.17728 0.93123 0.90609 0.92328 1.19431 0.99587 1.41270 0.91093 0.92652 1.26850 0.99923 0.94581 0.95354 1.69710 1.39450 1.35167 1.02716 0.85545 0.78164 0.79667 0.78230 1.16935 1.20200 1.17692 1.21211 0.97791 1.04865 0.93803 1.88552 1.70833 1.40571 1.32051 0.92385 0.93111 0.89354 0.87804 0.88976 0.87182 0.89674 0.88684 0.91407 0.84137 0.83356 0.87008 0.89310 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.44 71.98 0.68 -1.55 16 2 C 0.06 0.97 4.16 31.06 0.13 1.10 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.14 -1.43 6.54 31.85 0.21 -1.22 16 5 C -0.14 -1.79 6.57 32.05 0.21 -1.58 16 6 C 0.08 1.70 3.74 31.26 0.12 1.81 16 7 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 8 C 0.06 1.58 5.18 71.98 0.37 1.96 16 9 O -0.34 -11.93 9.46 -55.21 -0.52 -12.45 16 10 C 0.52 21.37 7.90 70.34 0.56 21.92 16 11 O -0.54 -24.52 16.12 19.93 0.32 -24.20 16 12 C -0.11 -4.65 5.87 -20.14 -0.12 -4.77 16 13 C -0.17 -6.45 9.62 22.71 0.22 -6.23 16 14 C -0.09 -3.28 10.01 22.18 0.22 -3.06 16 15 C -0.21 -9.74 7.17 22.77 0.16 -9.58 16 16 C 0.06 3.34 5.10 -21.32 -0.11 3.24 16 17 C -0.48 -27.55 9.57 23.47 0.22 -27.32 16 18 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 19 C 0.05 2.56 5.40 85.26 0.46 3.02 16 20 N -0.84 -46.12 13.93 21.82 0.30 -45.81 16 21 Si 0.96 41.47 24.52 68.60 1.68 43.15 16 22 H -0.24 -9.57 6.71 99.48 0.67 -8.90 16 23 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.25 -11.23 6.86 99.48 0.68 -10.54 16 25 C -0.16 -7.87 9.34 23.02 0.21 -7.65 16 26 O -0.40 -9.90 10.70 -148.97 -1.59 -11.49 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.75 7.86 -2.38 -0.02 0.73 16 32 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.05 8.06 -2.39 -0.02 1.03 16 34 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.14 4.68 7.59 -2.91 -0.02 4.65 16 37 H 0.15 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.11 4.92 4.72 -2.91 -0.01 4.91 16 39 H 0.30 14.40 8.30 -92.70 -0.77 13.63 16 40 H 0.10 5.21 7.64 -2.91 -0.02 5.19 16 Total: -1.00 -66.51 334.55 4.71 -61.80 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.97 Total: 18.91 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 3.55 Total: -29.90 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.30 Total: -45.81 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.80 Total: -48.15 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.68 Total: 43.15 kcal Total: -66.51 4.71 -61.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762170071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.881 kcal (2) G-P(sol) polarization free energy of solvation -66.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds