Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.82546 * 2 1 4 4 C 1.54377 * 109.90628 * 120.94119 * 2 1 3 5 5 C 1.55418 * 102.31120 * 140.84194 * 4 2 1 6 6 C 1.54945 * 100.89038 * 325.98729 * 5 4 2 7 7 H 1.09004 * 110.31012 * 277.36070 * 6 5 4 8 8 C 1.52997 * 110.30774 * 155.28899 * 6 5 4 9 9 O 1.45209 * 109.47033 * 176.39093 * 8 6 5 10 10 C 1.34707 * 116.99758 * 179.97438 * 9 8 6 11 11 O 1.21460 * 120.00302 * 0.02562 * 10 9 8 12 12 C 1.47763 * 119.99729 * 179.97438 * 10 9 8 13 13 C 1.39969 * 120.03182 * 0.02562 * 12 10 9 14 14 C 1.38316 * 120.35558 * 179.97438 * 13 12 10 15 15 C 1.37756 * 120.41991 * 0.02562 * 14 13 12 16 16 C 1.40763 * 120.04866 * 359.97438 * 15 14 13 17 17 C 1.41437 * 120.17473 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00039 * 24.35003 * 17 16 15 19 19 C 1.39938 * 119.99907 * 204.35076 * 17 16 15 20 20 N 1.30824 * 120.00036 * 17.73028 * 19 17 16 21 21 Si 1.86801 * 119.99925 * 197.72925 * 19 17 16 22 22 H 1.48502 * 109.47059 * 90.00240 * 21 19 17 23 23 H 1.48500 * 109.47117 * 210.00186 * 21 19 17 24 24 H 1.48500 * 109.47337 * 330.00023 * 21 19 17 25 25 C 1.39046 * 120.03393 * 179.72225 * 12 10 9 26 26 O 1.43243 * 109.82702 * 239.11703 * 2 1 3 27 27 H 1.09001 * 109.47225 * 179.43229 * 1 2 3 28 28 H 1.09000 * 109.47294 * 299.42842 * 1 2 3 29 29 H 1.08996 * 109.47310 * 59.42781 * 1 2 3 30 30 H 1.08999 * 110.84663 * 259.09806 * 4 2 1 31 31 H 1.08998 * 110.85201 * 22.71633 * 4 2 1 32 32 H 1.09001 * 111.20846 * 208.06085 * 5 4 2 33 33 H 1.08999 * 111.08603 * 83.86426 * 5 4 2 34 34 H 1.08999 * 109.47442 * 56.39154 * 8 6 5 35 35 H 1.08993 * 109.47494 * 296.38923 * 8 6 5 36 36 H 1.07997 * 119.82576 * 359.96742 * 13 12 10 37 37 H 1.08006 * 119.79235 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.98312 * 180.02562 * 15 14 13 39 39 H 0.97005 * 120.00446 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.20139 * 0.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 6 2.0556 -0.7463 1.2450 5 6 3.2755 -1.5228 0.6754 6 6 2.7764 -1.8426 -0.7562 7 1 2.1433 -2.7299 -0.7468 8 6 3.9638 -2.0485 -1.6988 9 8 3.4780 -2.4305 -3.0129 10 6 4.4034 -2.6505 -3.9667 11 8 5.5837 -2.5272 -3.7079 12 6 3.9826 -3.0430 -5.3277 13 6 2.6227 -3.1858 -5.6266 14 6 2.2213 -3.5524 -6.8985 15 6 3.1545 -3.7817 -7.8855 16 6 4.5267 -3.6432 -7.6039 17 6 5.4872 -3.8785 -8.6151 18 1 5.2130 -3.7763 -9.6547 19 6 6.7929 -4.2437 -8.2686 20 7 7.0475 -4.7025 -7.0702 21 14 8.1722 -4.0762 -9.5172 22 1 8.7838 -2.7280 -9.4012 23 1 9.2040 -5.1120 -9.2569 24 1 7.6252 -4.2556 -10.8861 25 6 4.9369 -3.2647 -6.3144 26 8 2.0158 -0.6917 -1.1565 27 1 -0.3634 -1.0276 -0.0102 28 1 -0.3634 0.5049 0.8951 29 1 -0.3634 0.5227 -0.8848 30 1 2.3688 -0.0422 2.0158 31 1 1.3043 -1.4357 1.6300 32 1 3.4601 -2.4365 1.2404 33 1 4.1644 -0.8925 0.6499 34 1 4.6071 -2.8360 -1.3063 35 1 4.5311 -1.1211 -1.7767 36 1 1.8828 -3.0089 -4.8601 37 1 1.1695 -3.6595 -7.1192 38 1 2.8332 -4.0673 -8.8762 39 1 7.9527 -4.9553 -6.8298 40 1 5.9872 -3.1514 -6.0897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762170072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -126.871689 kcal Electronic energy + Delta-G solvation = -22389.525174 eV Core-core repulsion = 18940.460461 eV Total energy + Delta-G solvation = -3449.064713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.05361 -39.36237 -37.32871 -35.69878 -33.73541 -32.50458 -32.35123 -30.33701 -29.48329 -28.29838 -25.38396 -24.41642 -22.72627 -21.74998 -20.97515 -20.77149 -19.71334 -17.80001 -17.30200 -16.43175 -16.30443 -15.75806 -15.39031 -14.98412 -14.66498 -14.44601 -13.84768 -13.70468 -13.30179 -13.14915 -12.98567 -12.59485 -12.40683 -12.22773 -11.97463 -11.90478 -11.64348 -11.44612 -11.19037 -11.11070 -11.06930 -11.03451 -10.72699 -10.50790 -10.20149 -10.15199 -9.70408 -9.61588 -9.43521 -9.23007 -7.71571 -7.53246 -6.81191 -4.41952 2.01677 2.80002 3.07554 3.10777 3.15465 3.19232 3.57835 3.64797 3.91474 4.21051 4.50893 4.57836 4.60082 4.92876 4.94873 5.12941 5.14873 5.29064 5.35444 5.42956 5.45408 5.55330 5.56828 5.65776 5.73452 5.88440 5.97277 6.02248 6.16465 6.45372 6.65961 6.93703 6.96797 6.99622 7.02923 7.19086 7.33737 7.71534 7.78425 7.93231 8.12525 8.46291 8.59986 8.78988 8.81137 10.14259 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028267 B = 0.003274 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.304982 B = 8551.147489 C = 9290.488577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.150 4.150 6 C 0.084 3.916 7 H 0.082 0.918 8 C 0.068 3.932 9 O -0.348 6.348 10 C 0.512 3.488 11 O -0.521 6.521 12 C -0.115 4.115 13 C -0.191 4.191 14 C -0.104 4.104 15 C -0.201 4.201 16 C 0.095 3.905 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.788 5.788 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.089 4.089 26 O -0.363 6.363 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.284 0.716 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.278 5.569 14.343 17.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 H 0.096 0.904 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.027 3.973 7 H 0.100 0.900 8 C -0.007 4.007 9 O -0.265 6.265 10 C 0.359 3.641 11 O -0.411 6.411 12 C -0.116 4.116 13 C -0.211 4.211 14 C -0.123 4.123 15 C -0.221 4.221 16 C 0.093 3.907 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.412 5.412 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.186 1.186 25 C -0.109 4.109 26 O -0.283 6.283 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.772 5.567 14.389 16.849 hybrid contribution 0.807 -0.056 -0.098 0.815 sum -5.965 5.511 14.290 16.437 Atomic orbital electron populations 1.22134 0.94881 1.02685 1.02236 1.22743 0.94497 0.96427 0.84967 0.90360 1.23202 0.97640 0.99721 0.98141 1.23264 0.98942 1.01627 0.94895 1.22995 0.92051 0.90327 0.91968 0.90033 1.23055 0.95370 1.01071 0.81194 1.86639 1.39929 1.79916 1.20017 1.21889 0.83502 0.72878 0.85805 1.90750 1.18840 1.49363 1.82115 1.18836 0.95114 1.08766 0.88880 1.20595 0.93612 1.09958 0.96919 1.20511 0.97575 1.00725 0.93441 1.21190 0.93388 1.09130 0.98419 1.17542 0.91753 0.89275 0.92159 1.19569 0.93772 1.41150 0.94477 0.89948 1.25963 1.00215 0.92288 0.96104 1.69782 1.22773 1.28594 1.20072 0.86254 0.79942 0.79021 0.81202 1.19158 1.20247 1.18552 1.21655 0.98951 0.98067 0.92217 1.88596 1.70318 1.39930 1.29426 0.92118 0.91732 0.91743 0.89908 0.90223 0.89344 0.89869 0.90228 0.90911 0.87771 0.88531 0.88353 0.90461 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.45 37.16 0.35 -1.07 16 2 C 0.07 0.72 4.15 -26.01 -0.11 0.61 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.15 -1.14 6.55 -24.73 -0.16 -1.31 16 5 C -0.15 -1.32 6.58 -24.42 -0.16 -1.48 16 6 C 0.08 1.06 3.73 -25.71 -0.10 0.96 16 7 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 8 C 0.07 1.06 5.18 37.16 0.19 1.25 16 9 O -0.35 -6.99 9.46 -41.93 -0.40 -7.38 16 10 C 0.51 11.98 7.90 34.62 0.27 12.26 16 11 O -0.52 -13.06 16.12 -19.23 -0.31 -13.37 16 12 C -0.11 -2.86 5.87 -105.06 -0.62 -3.47 16 13 C -0.19 -4.37 9.62 -38.90 -0.37 -4.75 16 14 C -0.10 -2.31 10.01 -39.73 -0.40 -2.71 16 15 C -0.20 -4.84 9.78 -38.80 -0.38 -5.22 16 16 C 0.10 2.53 5.57 -106.87 -0.60 1.94 16 17 C -0.46 -12.11 9.05 -37.73 -0.34 -12.45 16 18 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 19 C 0.07 1.84 5.14 -17.34 -0.09 1.76 16 20 N -0.79 -20.83 10.96 55.55 0.61 -20.22 16 21 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.09 -2.42 8.24 -38.43 -0.32 -2.74 16 26 O -0.36 -5.17 10.70 -35.45 -0.38 -5.55 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.54 7.85 -51.93 -0.41 0.13 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.71 8.06 -51.93 -0.42 0.29 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 37 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 40 H 0.14 3.88 5.74 -52.48 -0.30 3.58 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -30.19 339.79 -8.93 -39.12 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.73 Total: 4.94 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -2.82 Total: -16.40 kcal Atomic # 7 Polarization: -20.83 SS G_CDS: 0.61 Total: -20.22 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -1.09 Total: -26.31 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.19 -8.93 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762170072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.751 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds