Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.82546 * 2 1 4 4 C 1.54377 * 109.90628 * 120.94119 * 2 1 3 5 5 C 1.55418 * 102.31120 * 140.84194 * 4 2 1 6 6 C 1.54945 * 100.89038 * 325.98729 * 5 4 2 7 7 H 1.09004 * 110.31012 * 277.36070 * 6 5 4 8 8 C 1.52997 * 110.30774 * 155.28899 * 6 5 4 9 9 O 1.45209 * 109.47033 * 176.39093 * 8 6 5 10 10 C 1.34707 * 116.99758 * 179.97438 * 9 8 6 11 11 O 1.21460 * 120.00302 * 0.02562 * 10 9 8 12 12 C 1.47763 * 119.99729 * 179.97438 * 10 9 8 13 13 C 1.39969 * 120.03182 * 0.02562 * 12 10 9 14 14 C 1.38316 * 120.35558 * 179.97438 * 13 12 10 15 15 C 1.37756 * 120.41991 * 0.02562 * 14 13 12 16 16 C 1.40763 * 120.04866 * 359.97438 * 15 14 13 17 17 C 1.41437 * 120.17473 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00039 * 24.35003 * 17 16 15 19 19 C 1.39938 * 119.99907 * 204.35076 * 17 16 15 20 20 N 1.30824 * 120.00036 * 17.73028 * 19 17 16 21 21 Si 1.86801 * 119.99925 * 197.72925 * 19 17 16 22 22 H 1.48502 * 109.47059 * 90.00240 * 21 19 17 23 23 H 1.48500 * 109.47117 * 210.00186 * 21 19 17 24 24 H 1.48500 * 109.47337 * 330.00023 * 21 19 17 25 25 C 1.39046 * 120.03393 * 179.72225 * 12 10 9 26 26 O 1.43243 * 109.82702 * 239.11703 * 2 1 3 27 27 H 1.09001 * 109.47225 * 179.43229 * 1 2 3 28 28 H 1.09000 * 109.47294 * 299.42842 * 1 2 3 29 29 H 1.08996 * 109.47310 * 59.42781 * 1 2 3 30 30 H 1.08999 * 110.84663 * 259.09806 * 4 2 1 31 31 H 1.08998 * 110.85201 * 22.71633 * 4 2 1 32 32 H 1.09001 * 111.20846 * 208.06085 * 5 4 2 33 33 H 1.08999 * 111.08603 * 83.86426 * 5 4 2 34 34 H 1.08999 * 109.47442 * 56.39154 * 8 6 5 35 35 H 1.08993 * 109.47494 * 296.38923 * 8 6 5 36 36 H 1.07997 * 119.82576 * 359.96742 * 13 12 10 37 37 H 1.08006 * 119.79235 * 180.02562 * 14 13 12 38 38 H 1.08001 * 119.98312 * 180.02562 * 15 14 13 39 39 H 0.97005 * 120.00446 * 180.02562 * 20 19 17 40 40 H 1.08004 * 120.20139 * 0.02562 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 6 2.0556 -0.7463 1.2450 5 6 3.2755 -1.5228 0.6754 6 6 2.7764 -1.8426 -0.7562 7 1 2.1433 -2.7299 -0.7468 8 6 3.9638 -2.0485 -1.6988 9 8 3.4780 -2.4305 -3.0129 10 6 4.4034 -2.6505 -3.9667 11 8 5.5837 -2.5272 -3.7079 12 6 3.9826 -3.0430 -5.3277 13 6 2.6227 -3.1858 -5.6266 14 6 2.2213 -3.5524 -6.8985 15 6 3.1545 -3.7817 -7.8855 16 6 4.5267 -3.6432 -7.6039 17 6 5.4872 -3.8785 -8.6151 18 1 5.2130 -3.7763 -9.6547 19 6 6.7929 -4.2437 -8.2686 20 7 7.0475 -4.7025 -7.0702 21 14 8.1722 -4.0762 -9.5172 22 1 8.7838 -2.7280 -9.4012 23 1 9.2040 -5.1120 -9.2569 24 1 7.6252 -4.2556 -10.8861 25 6 4.9369 -3.2647 -6.3144 26 8 2.0158 -0.6917 -1.1565 27 1 -0.3634 -1.0276 -0.0102 28 1 -0.3634 0.5049 0.8951 29 1 -0.3634 0.5227 -0.8848 30 1 2.3688 -0.0422 2.0158 31 1 1.3043 -1.4357 1.6300 32 1 3.4601 -2.4365 1.2404 33 1 4.1644 -0.8925 0.6499 34 1 4.6071 -2.8360 -1.3063 35 1 4.5311 -1.1211 -1.7767 36 1 1.8828 -3.0089 -4.8601 37 1 1.1695 -3.6595 -7.1192 38 1 2.8332 -4.0673 -8.8762 39 1 7.9527 -4.9553 -6.8298 40 1 5.9872 -3.1514 -6.0897 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762170072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = -142.755784 kcal Electronic energy + Delta-G solvation = -22390.213960 eV Core-core repulsion = 18940.460461 eV Total energy + Delta-G solvation = -3449.753500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54283 -40.53385 -39.17346 -37.42240 -35.63139 -33.38790 -33.26044 -32.16653 -31.37834 -29.33086 -27.28923 -25.63433 -24.23392 -22.86394 -22.57575 -21.67947 -21.47372 -19.64479 -18.40005 -18.05101 -17.85198 -17.19863 -16.80807 -16.58277 -16.42134 -15.49466 -15.22544 -15.08879 -14.61775 -14.46702 -14.34242 -14.30057 -13.58795 -13.54730 -13.23923 -13.01376 -12.87410 -12.83937 -12.70092 -12.57979 -12.37557 -12.21806 -12.00379 -11.87858 -11.76050 -11.61924 -11.55447 -11.27137 -11.10796 -10.54437 -9.63401 -9.46257 -8.69451 -6.40779 0.11038 0.95310 1.37551 1.46198 1.52120 1.64801 1.78346 2.18875 2.69867 2.72183 3.45253 3.58664 3.62027 3.84410 3.95627 4.01162 4.09336 4.29989 4.32301 4.37333 4.41470 4.47222 4.61683 4.73751 4.79384 4.85672 4.86657 4.99875 5.03133 5.05590 5.11707 5.22342 5.26153 5.27549 5.34719 5.43396 5.80568 5.88162 5.99771 6.10953 6.21195 6.51701 6.78762 6.85294 6.87770 8.28290 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028267 B = 0.003274 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.304982 B = 8551.147489 C = 9290.488577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.058 3.942 3 H 0.081 0.919 4 C -0.139 4.139 5 C -0.143 4.143 6 C 0.084 3.916 7 H 0.085 0.915 8 C 0.059 3.941 9 O -0.347 6.347 10 C 0.514 3.486 11 O -0.547 6.547 12 C -0.130 4.130 13 C -0.183 4.183 14 C -0.098 4.098 15 C -0.203 4.203 16 C 0.066 3.934 17 C -0.493 4.493 18 H 0.089 0.911 19 C 0.029 3.971 20 N -0.826 5.826 21 Si 0.986 3.014 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.250 1.250 25 C -0.123 4.123 26 O -0.399 6.399 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.288 0.712 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 5.773 15.355 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 H 0.099 0.901 4 C -0.176 4.176 5 C -0.181 4.181 6 C 0.026 3.974 7 H 0.103 0.897 8 C -0.015 4.015 9 O -0.263 6.263 10 C 0.362 3.638 11 O -0.440 6.440 12 C -0.131 4.131 13 C -0.202 4.202 14 C -0.116 4.116 15 C -0.223 4.223 16 C 0.064 3.936 17 C -0.522 4.522 18 H 0.107 0.893 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.806 3.194 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.173 1.173 25 C -0.142 4.142 26 O -0.320 6.320 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.099 0.901 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.223 5.776 15.420 18.405 hybrid contribution 1.080 -0.067 -0.300 1.123 sum -7.142 5.710 15.119 17.669 Atomic orbital electron populations 1.22123 0.94014 1.02622 1.02860 1.23029 0.95282 0.96561 0.84991 0.90108 1.23204 0.97121 0.99935 0.97366 1.23296 0.99481 1.02896 0.92385 1.23083 0.90943 0.90343 0.92994 0.89716 1.23502 0.97453 1.01028 0.79493 1.86605 1.39098 1.79273 1.21348 1.21723 0.83433 0.72453 0.86152 1.90722 1.19984 1.50588 1.82657 1.19098 0.95919 1.08641 0.89424 1.20930 0.92986 1.08325 0.97962 1.20951 0.99482 0.98762 0.92381 1.21510 0.92677 1.08266 0.99857 1.17911 0.93388 0.89981 0.92314 1.19874 0.94975 1.42586 0.94763 0.89333 1.26889 1.02451 0.91228 0.98010 1.69872 1.23486 1.29648 1.22144 0.85144 0.76516 0.78908 0.78824 1.19099 1.19387 1.17299 1.21466 0.98120 1.01078 0.93577 1.88555 1.70748 1.40590 1.32103 0.92437 0.89192 0.93099 0.87617 0.88926 0.87174 0.89715 0.89166 0.91582 0.85474 0.84139 0.86479 0.90114 0.87576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.45 71.98 0.68 -1.81 16 2 C 0.06 1.07 4.15 31.06 0.13 1.20 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.14 -1.69 6.55 31.89 0.21 -1.48 16 5 C -0.14 -2.17 6.58 32.09 0.21 -1.96 16 6 C 0.08 2.01 3.73 31.26 0.12 2.13 16 7 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 8 C 0.06 1.84 5.18 71.98 0.37 2.21 16 9 O -0.35 -13.98 9.46 -54.81 -0.52 -14.50 16 10 C 0.51 24.72 7.90 70.34 0.56 25.28 16 11 O -0.55 -28.61 16.12 19.96 0.32 -28.29 16 12 C -0.13 -6.59 5.87 -20.15 -0.12 -6.71 16 13 C -0.18 -8.14 9.62 22.71 0.22 -7.92 16 14 C -0.10 -4.12 10.01 22.17 0.22 -3.90 16 15 C -0.20 -9.63 9.78 22.77 0.22 -9.40 16 16 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 17 C -0.49 -26.58 9.05 23.47 0.21 -26.36 16 18 H 0.09 4.47 7.91 -2.91 -0.02 4.45 16 19 C 0.03 1.51 5.14 85.25 0.44 1.95 16 20 N -0.83 -45.54 10.96 21.82 0.24 -45.30 16 21 Si 0.99 39.10 29.59 68.60 2.03 41.13 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 24 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 25 C -0.12 -6.92 8.24 23.02 0.19 -6.73 16 26 O -0.40 -11.08 10.70 -148.77 -1.59 -12.67 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.92 7.85 -2.39 -0.02 0.90 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.27 8.06 -2.39 -0.02 1.25 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.13 5.04 7.59 -2.91 -0.02 5.02 16 37 H 0.14 4.68 8.06 -2.91 -0.02 4.65 16 38 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 39 H 0.29 14.56 8.30 -92.70 -0.77 13.79 16 40 H 0.11 6.53 5.74 -2.91 -0.02 6.51 16 Total: -1.00 -68.25 339.79 5.05 -63.20 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 1.03 Total: 26.44 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 3.54 Total: -30.01 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.24 Total: -45.30 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -1.79 Total: -55.46 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.25 5.05 -63.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762170072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.557 kcal (2) G-P(sol) polarization free energy of solvation -68.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds