Wall clock time and date at job start Tue Mar 31 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 117.00119 * 2 1 4 4 C 1.38749 * 120.08904 * 0.27441 * 3 2 1 5 5 C 1.38007 * 119.87700 * 180.23427 * 4 3 2 6 6 C 1.38549 * 120.28781 * 359.46899 * 5 4 3 7 7 C 1.38262 * 119.94036 * 0.27613 * 6 5 4 8 8 C 1.38416 * 119.90134 * 0.02562 * 7 6 5 9 9 C 1.51375 * 109.75570 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.30373 * 223.87695 * 9 7 6 11 11 C 1.50706 * 110.29787 * 101.72770 * 9 7 6 12 12 O 1.20819 * 119.99997 * 244.25158 * 11 9 7 13 13 O 1.34232 * 119.99883 * 64.25666 * 11 9 7 14 14 C 1.45195 * 116.99895 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.47203 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47285 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99768 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00066 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46975 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47484 * 119.99557 * 20 18 16 23 23 H 1.48501 * 109.47247 * 240.00022 * 20 18 16 24 24 C 1.54338 * 105.17255 * 342.80572 * 9 7 6 25 25 C 1.51396 * 130.32012 * 180.30361 * 6 5 4 26 26 H 1.09001 * 109.47343 * 59.99769 * 1 2 3 27 27 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46643 * 300.00091 * 1 2 3 29 29 H 1.07998 * 120.06910 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.85909 * 179.75283 * 5 4 3 31 31 H 1.08000 * 119.90964 * 179.97438 * 8 7 6 32 32 H 1.08994 * 109.47635 * 299.99573 * 14 13 11 33 33 H 1.09004 * 109.47354 * 59.99918 * 14 13 11 34 34 H 1.09004 * 109.47204 * 300.00072 * 15 14 13 35 35 H 1.09004 * 109.46603 * 59.99984 * 15 14 13 36 36 H 0.96998 * 120.00149 * 179.97438 * 19 18 16 37 37 H 1.09000 * 110.82367 * 268.13888 * 24 9 7 38 38 H 1.09002 * 110.99011 * 144.66864 * 24 9 7 39 39 H 1.09000 * 110.30278 * 316.10534 * 25 6 5 40 40 H 1.09000 * 110.29759 * 78.25241 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 0.0057 5 6 1.9232 3.6030 0.0008 6 6 3.3067 3.6774 0.0013 7 6 4.0601 2.5180 0.0009 8 6 3.4299 1.2856 -0.0005 9 6 5.5335 2.8652 0.0021 10 1 6.0711 2.2353 -0.7066 11 6 6.1073 2.7044 1.3863 12 8 6.5333 3.6671 1.9793 13 8 6.1453 1.4917 1.9604 14 6 6.7122 1.4115 3.2947 15 6 6.6696 -0.0387 3.7806 16 6 7.2574 -0.1219 5.1658 17 1 7.6242 0.7705 5.6512 18 6 7.3268 -1.3371 5.8134 19 7 6.8797 -2.4236 5.2225 20 14 8.0547 -1.4401 7.5306 21 1 8.4817 -0.0871 7.9692 22 1 7.0326 -1.9660 8.4709 23 1 9.2290 -2.3490 7.5168 24 6 5.6005 4.3433 -0.4371 25 6 4.2230 4.8826 0.0027 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2135 2.3222 0.0098 30 1 1.3362 4.5095 0.0013 31 1 4.0183 0.3799 -0.0012 32 1 7.7456 1.7571 3.2719 33 1 6.1342 2.0388 3.9734 34 1 5.6360 -0.3840 3.8036 35 1 7.2474 -0.6663 3.1020 36 1 6.9288 -3.2786 5.6780 37 1 5.7200 4.4214 -1.5177 38 1 6.4047 4.8678 0.0789 39 1 3.8657 5.6302 -0.7054 40 1 4.2859 5.3085 1.0041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763446511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:55 Heat of formation + Delta-G solvation = -111.021021 kcal Electronic energy + Delta-G solvation = -22630.359830 eV Core-core repulsion = 19181.982453 eV Total energy + Delta-G solvation = -3448.377377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94430 -39.77712 -38.39147 -36.18870 -34.68291 -33.32391 -31.69648 -30.27855 -28.75664 -28.52604 -26.74937 -25.01009 -22.98028 -22.48727 -20.92968 -20.80737 -19.84416 -18.02652 -17.30815 -16.48146 -16.32890 -15.96098 -15.80744 -15.75297 -15.34426 -14.68660 -14.53055 -14.09466 -13.54862 -13.53876 -12.96019 -12.75395 -12.67969 -12.35793 -12.21151 -11.89046 -11.73136 -11.41702 -11.36640 -11.18999 -11.03003 -10.80410 -10.75243 -10.68693 -10.64327 -10.24573 -9.61963 -9.61262 -9.26644 -8.85950 -8.42456 -8.07912 -6.08082 -4.12346 1.16553 1.37035 2.56458 3.14974 3.19357 3.28814 3.36280 3.41536 3.69864 4.29436 4.40623 4.42105 4.73655 4.82880 4.91534 4.99124 5.02112 5.13144 5.19069 5.28459 5.32878 5.36417 5.38851 5.54732 5.65467 5.77230 5.83020 6.01558 6.06275 6.12113 6.14203 6.21478 6.29399 6.56309 6.62581 6.67009 7.02708 7.33952 7.59131 7.65934 7.89263 8.21194 8.29366 8.93431 9.51925 11.03464 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004082 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.109473 B = 6858.163223 C = 8336.230598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.313 6.313 3 C 0.125 3.875 4 C -0.201 4.201 5 C -0.074 4.074 6 C -0.125 4.125 7 C -0.056 4.056 8 C -0.115 4.115 9 C -0.045 4.045 10 H 0.118 0.882 11 C 0.468 3.532 12 O -0.514 6.514 13 O -0.351 6.351 14 C 0.075 3.925 15 C 0.025 3.975 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.108 4.108 25 C -0.078 4.078 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.703 10.937 -15.243 22.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.080 3.920 4 C -0.219 4.219 5 C -0.092 4.092 6 C -0.125 4.125 7 C -0.056 4.056 8 C -0.134 4.134 9 C -0.064 4.064 10 H 0.136 0.864 11 C 0.310 3.690 12 O -0.403 6.403 13 O -0.267 6.267 14 C 0.003 3.997 15 C -0.012 4.012 16 C -0.564 4.564 17 H 0.078 0.922 18 C -0.141 4.141 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.145 4.145 25 C -0.115 4.115 26 H 0.072 0.928 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.506 10.802 -14.990 21.766 hybrid contribution 0.084 -0.109 1.134 1.142 sum -11.422 10.693 -13.856 20.899 Atomic orbital electron populations 1.23049 0.78501 1.03986 1.01136 1.86109 1.21218 1.26622 1.88701 1.18763 0.91972 0.84253 0.97039 1.21128 0.99896 0.92121 1.08777 1.20312 0.92895 0.97085 0.98874 1.20545 0.93528 0.95613 1.02815 1.19770 0.93418 0.92805 0.99622 1.19895 0.91399 0.98071 1.03988 1.20490 0.93204 0.99951 0.92768 0.86383 1.23131 0.75689 0.81957 0.88213 1.90599 1.44835 1.40623 1.64247 1.86534 1.74122 1.31355 1.34705 1.23643 0.96675 1.02650 0.76762 1.19168 0.98756 0.87396 0.95924 1.21020 1.41146 0.94197 1.00009 0.92243 1.24977 0.95313 0.95557 0.98281 1.69985 1.46090 0.98873 1.37834 0.86431 0.78838 0.78231 0.83911 1.19594 1.20842 1.20823 1.22311 0.98576 0.92066 1.01572 1.21010 0.92740 0.95259 1.02486 0.92834 0.88197 0.92649 0.85295 0.85872 0.84409 0.92316 0.92448 0.95349 0.95345 0.92785 0.89756 0.88499 0.90467 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.16 10.50 -19.42 -0.20 -4.37 16 3 C 0.12 1.71 6.68 -39.26 -0.26 1.45 16 4 C -0.20 -2.30 9.04 -39.48 -0.36 -2.66 16 5 C -0.07 -0.83 10.03 -39.55 -0.40 -1.23 16 6 C -0.12 -1.57 6.14 -104.16 -0.64 -2.21 16 7 C -0.06 -0.79 5.42 -104.22 -0.57 -1.35 16 8 C -0.11 -1.70 9.98 -39.38 -0.39 -2.09 16 9 C -0.05 -0.61 3.38 -91.89 -0.31 -0.92 16 10 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 11 C 0.47 8.46 7.25 36.01 0.26 8.72 16 12 O -0.51 -10.21 15.22 -18.74 -0.29 -10.49 16 13 O -0.35 -7.33 10.21 -39.26 -0.40 -7.73 16 14 C 0.08 1.73 5.40 37.16 0.20 1.94 16 15 C 0.02 0.66 5.35 -27.88 -0.15 0.51 16 16 C -0.53 -15.06 9.11 -34.44 -0.31 -15.38 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.11 -1.18 6.36 -25.33 -0.16 -1.34 16 25 C -0.08 -0.85 6.76 -26.84 -0.18 -1.03 16 26 H 0.05 0.36 7.68 -51.93 -0.40 -0.04 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 29 H 0.13 1.13 6.31 -52.49 -0.33 0.80 16 30 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 2.08 8.06 -52.49 -0.42 1.65 16 32 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 33 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.14 6.99 -51.93 -0.36 0.77 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -33.08 340.33 -8.10 -41.18 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -5.68 Total: -1.68 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.37 Total: -12.70 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.89 Total: -22.59 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.08 -8.10 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763446511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.839 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds