Wall clock time and date at job start Tue Mar 31 2020 06:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 117.00119 * 2 1 4 4 C 1.38749 * 120.08904 * 0.27441 * 3 2 1 5 5 C 1.38007 * 119.87700 * 180.23427 * 4 3 2 6 6 C 1.38549 * 120.28781 * 359.46899 * 5 4 3 7 7 C 1.38262 * 119.94036 * 0.27613 * 6 5 4 8 8 C 1.38416 * 119.90134 * 0.02562 * 7 6 5 9 9 C 1.51375 * 109.75570 * 180.02562 * 7 6 5 10 10 H 1.08997 * 110.30373 * 223.87695 * 9 7 6 11 11 C 1.50706 * 110.29787 * 101.72770 * 9 7 6 12 12 O 1.20819 * 119.99997 * 244.25158 * 11 9 7 13 13 O 1.34232 * 119.99883 * 64.25666 * 11 9 7 14 14 C 1.45195 * 116.99895 * 179.97438 * 13 11 9 15 15 C 1.53003 * 109.47203 * 179.97438 * 14 13 11 16 16 C 1.50702 * 109.47285 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99768 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99949 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00140 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00066 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46975 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47484 * 119.99557 * 20 18 16 23 23 H 1.48501 * 109.47247 * 240.00022 * 20 18 16 24 24 C 1.54338 * 105.17255 * 342.80572 * 9 7 6 25 25 C 1.51396 * 130.32012 * 180.30361 * 6 5 4 26 26 H 1.09001 * 109.47343 * 59.99769 * 1 2 3 27 27 H 1.08998 * 109.46995 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46643 * 300.00091 * 1 2 3 29 29 H 1.07998 * 120.06910 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.85909 * 179.75283 * 5 4 3 31 31 H 1.08000 * 119.90964 * 179.97438 * 8 7 6 32 32 H 1.08994 * 109.47635 * 299.99573 * 14 13 11 33 33 H 1.09004 * 109.47354 * 59.99918 * 14 13 11 34 34 H 1.09004 * 109.47204 * 300.00072 * 15 14 13 35 35 H 1.09004 * 109.46603 * 59.99984 * 15 14 13 36 36 H 0.96998 * 120.00149 * 179.97438 * 19 18 16 37 37 H 1.09000 * 110.82367 * 268.13888 * 24 9 7 38 38 H 1.09002 * 110.99011 * 144.66864 * 24 9 7 39 39 H 1.09000 * 110.30278 * 316.10534 * 25 6 5 40 40 H 1.09000 * 110.29759 * 78.25241 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 0.0057 5 6 1.9232 3.6030 0.0008 6 6 3.3067 3.6774 0.0013 7 6 4.0601 2.5180 0.0009 8 6 3.4299 1.2856 -0.0005 9 6 5.5335 2.8652 0.0021 10 1 6.0711 2.2353 -0.7066 11 6 6.1073 2.7044 1.3863 12 8 6.5333 3.6671 1.9793 13 8 6.1453 1.4917 1.9604 14 6 6.7122 1.4115 3.2947 15 6 6.6696 -0.0387 3.7806 16 6 7.2574 -0.1219 5.1658 17 1 7.6242 0.7705 5.6512 18 6 7.3268 -1.3371 5.8134 19 7 6.8797 -2.4236 5.2225 20 14 8.0547 -1.4401 7.5306 21 1 8.4817 -0.0871 7.9692 22 1 7.0326 -1.9660 8.4709 23 1 9.2290 -2.3490 7.5168 24 6 5.6005 4.3433 -0.4371 25 6 4.2230 4.8826 0.0027 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2135 2.3222 0.0098 30 1 1.3362 4.5095 0.0013 31 1 4.0183 0.3799 -0.0012 32 1 7.7456 1.7571 3.2719 33 1 6.1342 2.0388 3.9734 34 1 5.6360 -0.3840 3.8036 35 1 7.2474 -0.6663 3.1020 36 1 6.9288 -3.2786 5.6780 37 1 5.7200 4.4214 -1.5177 38 1 6.4047 4.8678 0.0789 39 1 3.8657 5.6302 -0.7054 40 1 4.2859 5.3085 1.0041 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763446511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:55 Heat of formation + Delta-G solvation = -129.415185 kcal Electronic energy + Delta-G solvation = -22631.157461 eV Core-core repulsion = 19181.982453 eV Total energy + Delta-G solvation = -3449.175008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.11910 -40.99947 -39.45739 -37.76469 -35.69093 -35.48096 -32.77618 -32.23099 -29.76704 -29.42543 -27.69884 -26.93338 -24.11063 -23.73429 -22.76537 -21.80720 -21.08465 -19.31188 -18.64304 -18.22539 -17.63111 -17.42907 -17.19527 -16.64299 -16.53408 -16.32356 -15.73182 -15.24107 -14.93571 -14.44271 -14.41911 -14.24679 -14.15340 -13.60410 -13.18783 -13.13919 -13.04399 -12.79141 -12.63347 -12.60581 -12.53507 -12.25492 -12.21680 -11.95038 -11.70022 -11.62698 -11.51592 -11.49938 -11.30962 -10.64594 -9.88896 -9.03080 -8.29112 -6.43190 0.16783 0.40243 1.12428 1.39148 1.40338 1.53806 1.75214 2.31999 2.38365 2.69242 3.05030 3.37237 3.43401 3.71332 3.89595 3.97745 4.11526 4.17051 4.21887 4.25412 4.31035 4.35263 4.40142 4.49481 4.61381 4.65279 4.71625 4.76249 4.95325 4.97596 5.07061 5.18888 5.24990 5.29027 5.35603 5.41810 5.52378 5.59601 5.70862 5.73966 6.03226 6.44904 6.66913 6.71821 7.26917 8.83921 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014632 B = 0.004082 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.109473 B = 6858.163223 C = 8336.230598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.109 3.891 4 C -0.195 4.195 5 C -0.071 4.071 6 C -0.130 4.130 7 C -0.075 4.075 8 C -0.145 4.145 9 C -0.043 4.043 10 H 0.136 0.864 11 C 0.464 3.536 12 O -0.532 6.532 13 O -0.364 6.364 14 C 0.091 3.909 15 C 0.032 3.968 16 C -0.551 4.551 17 H 0.065 0.935 18 C 0.006 3.994 19 N -0.927 5.927 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.275 1.275 23 H -0.273 1.273 24 C -0.101 4.101 25 C -0.076 4.076 26 H 0.074 0.926 27 H 0.114 0.886 28 H 0.063 0.937 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.001 0.999 35 H 0.006 0.994 36 H 0.268 0.732 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.663 12.811 -15.517 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.064 3.936 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.131 4.131 7 C -0.076 4.076 8 C -0.164 4.164 9 C -0.062 4.062 10 H 0.154 0.846 11 C 0.308 3.692 12 O -0.422 6.422 13 O -0.280 6.280 14 C 0.018 3.982 15 C -0.005 4.005 16 C -0.588 4.588 17 H 0.083 0.917 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.199 1.199 24 C -0.138 4.138 25 C -0.112 4.112 26 H 0.093 0.907 27 H 0.132 0.868 28 H 0.081 0.919 29 H 0.177 0.823 30 H 0.175 0.825 31 H 0.135 0.865 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.019 0.981 35 H 0.025 0.975 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.129 0.871 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.476 12.691 -15.282 23.457 hybrid contribution 0.283 -0.712 1.144 1.377 sum -12.192 11.979 -14.138 22.181 Atomic orbital electron populations 1.23364 0.76187 1.05536 1.02485 1.86071 1.23765 1.26968 1.88791 1.18959 0.91851 0.85304 0.97492 1.21485 1.01332 0.91315 1.07193 1.20744 0.92678 0.98255 0.97190 1.20878 0.94374 0.95557 1.02257 1.19866 0.93676 0.93189 1.00826 1.19969 0.92398 0.97893 1.06104 1.20728 0.93140 1.02553 0.89746 0.84631 1.24126 0.74959 0.80538 0.89567 1.90579 1.45700 1.40762 1.65141 1.86542 1.74395 1.33558 1.33553 1.23152 0.97017 0.99877 0.78202 1.18965 0.96470 0.89472 0.95582 1.21395 1.41737 0.94853 1.00864 0.91651 1.25992 0.95383 0.94930 1.02977 1.70111 1.46945 0.99635 1.39937 0.85244 0.78150 0.78726 0.77987 1.18539 1.20005 1.19862 1.22398 0.98484 0.89472 1.03485 1.21053 0.92244 0.95223 1.02709 0.90745 0.86769 0.91863 0.82317 0.82480 0.86489 0.91882 0.92682 0.98072 0.97535 0.92296 0.86338 0.89356 0.87113 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -9.22 10.50 -92.41 -0.97 -10.19 16 3 C 0.11 3.00 6.68 22.48 0.15 3.15 16 4 C -0.19 -4.08 9.04 22.34 0.20 -3.88 16 5 C -0.07 -1.40 10.03 22.29 0.22 -1.18 16 6 C -0.13 -3.04 6.14 -19.56 -0.12 -3.16 16 7 C -0.08 -2.11 5.42 -19.60 -0.11 -2.22 16 8 C -0.14 -4.48 9.98 22.40 0.22 -4.26 16 9 C -0.04 -1.15 3.38 -11.62 -0.04 -1.19 16 10 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 11 C 0.46 17.07 7.25 71.24 0.52 17.59 16 12 O -0.53 -21.27 15.22 21.99 0.33 -20.94 16 13 O -0.36 -15.84 10.21 -51.44 -0.53 -16.37 16 14 C 0.09 4.34 5.40 71.98 0.39 4.73 16 15 C 0.03 1.82 5.35 29.85 0.16 1.98 16 16 C -0.55 -32.26 9.11 25.60 0.23 -32.02 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 20 Si 0.98 44.48 29.54 68.60 2.03 46.51 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 C -0.10 -2.00 6.36 31.50 0.20 -1.80 16 25 C -0.08 -1.44 6.76 30.52 0.21 -1.24 16 26 H 0.07 0.85 7.68 -2.39 -0.02 0.83 16 27 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 0.89 7.65 -2.38 -0.02 0.87 16 29 H 0.16 2.26 6.31 -2.91 -0.02 2.24 16 30 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 31 H 0.12 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.06 2.93 8.13 -2.39 -0.02 2.91 16 33 H 0.05 2.63 8.13 -2.38 -0.02 2.61 16 34 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.93 6.99 -2.39 -0.02 1.92 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -73.69 340.33 6.00 -67.69 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 1.03 Total: 11.18 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.81 Total: -21.27 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.28 Total: -56.62 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -1.16 Total: -47.49 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -73.69 6.00 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763446511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.728 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds