Wall clock time and date at job start Tue Mar 31 2020 06:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 116.99876 * 2 1 4 4 C 1.38748 * 120.09383 * 359.97438 * 3 2 1 5 5 C 1.37997 * 119.88045 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.29058 * 359.97438 * 5 4 3 7 7 C 1.38258 * 119.93411 * 0.02562 * 6 5 4 8 8 C 1.38416 * 119.90746 * 0.02562 * 7 6 5 9 9 C 1.51381 * 109.75669 * 180.02562 * 7 6 5 10 10 H 1.08995 * 110.30890 * 101.81725 * 9 7 6 11 11 C 1.50700 * 110.30345 * 223.87354 * 9 7 6 12 12 O 1.20821 * 120.00485 * 118.53828 * 11 9 7 13 13 O 1.34233 * 119.99946 * 298.54456 * 11 9 7 14 14 C 1.45196 * 117.00244 * 179.97438 * 13 11 9 15 15 C 1.52998 * 109.47149 * 180.02562 * 14 13 11 16 16 C 1.50706 * 109.47348 * 180.02562 * 15 14 13 17 17 H 1.08005 * 119.99758 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 C 1.54346 * 105.16807 * 342.79075 * 9 7 6 25 25 C 1.51387 * 130.32555 * 180.02562 * 6 5 4 26 26 H 1.09005 * 109.47121 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47060 * 299.99322 * 1 2 3 28 28 H 1.09001 * 109.47239 * 59.99846 * 1 2 3 29 29 H 1.08001 * 120.05922 * 359.97438 * 4 3 2 30 30 H 1.07999 * 119.85508 * 179.97438 * 5 4 3 31 31 H 1.08002 * 119.90948 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.47236 * 60.00122 * 14 13 11 33 33 H 1.09002 * 109.47072 * 299.99703 * 14 13 11 34 34 H 1.09001 * 109.47671 * 60.00226 * 15 14 13 35 35 H 1.09006 * 109.47297 * 299.99945 * 15 14 13 36 36 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 37 37 H 1.09002 * 110.82104 * 144.59627 * 24 9 7 38 38 H 1.09002 * 110.82257 * 268.14413 * 24 9 7 39 39 H 1.09003 * 110.30513 * 316.12107 * 25 6 5 40 40 H 1.08996 * 110.30157 * 78.17051 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3757 -0.0005 5 6 1.9232 3.6030 -0.0011 6 6 3.3067 3.6774 -0.0005 7 6 4.0600 2.5180 0.0000 8 6 3.4299 1.2856 -0.0005 9 6 5.5335 2.8651 0.0012 10 1 5.9489 2.7481 1.0020 11 6 6.2768 1.9934 -0.9779 12 8 6.8568 2.4931 -1.9125 13 8 6.2945 0.6615 -0.8116 14 6 7.0297 -0.1157 -1.7932 15 6 6.9365 -1.6017 -1.4409 16 6 7.7001 -2.4083 -2.4594 17 1 8.2014 -1.9109 -3.2766 18 6 7.7588 -3.7813 -2.3480 19 7 7.1480 -4.3871 -1.3533 20 14 8.7048 -4.7812 -3.6109 21 1 8.6154 -6.2233 -3.2682 22 1 8.1226 -4.5551 -4.9582 23 1 10.1288 -4.3600 -3.6099 24 6 5.6006 4.3428 -0.4395 25 6 4.2230 4.8825 -0.0004 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.2135 2.3221 -0.0014 30 1 1.3361 4.5094 -0.0019 31 1 4.0183 0.3799 -0.0005 32 1 8.0750 0.1934 -1.7925 33 1 6.6024 0.0503 -2.7821 34 1 5.8912 -1.9105 -1.4420 35 1 7.3635 -1.7681 -0.4519 36 1 6.6565 -3.8679 -0.6977 37 1 6.4047 4.8655 0.0786 38 1 5.7202 4.4199 -1.5202 39 1 3.8657 5.6294 -0.7093 40 1 4.2847 5.3105 1.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763446512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:57 Heat of formation + Delta-G solvation = -135.298531 kcal Electronic energy + Delta-G solvation = -22692.132691 eV Core-core repulsion = 19242.702562 eV Total energy + Delta-G solvation = -3449.430129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.14328 -41.07215 -39.52825 -37.90648 -35.86611 -35.77087 -32.81924 -32.05089 -29.81465 -29.46587 -27.66459 -26.60792 -24.08874 -23.85098 -23.01726 -21.84293 -21.17709 -19.33141 -18.82777 -18.51649 -17.91101 -17.54064 -17.08908 -16.68173 -16.40207 -16.09255 -15.67573 -15.41800 -15.08487 -14.68953 -14.43521 -14.13076 -13.92641 -13.71384 -13.63181 -13.28608 -13.19749 -12.78133 -12.63703 -12.51794 -12.50823 -12.27301 -12.20422 -11.92571 -11.76475 -11.63574 -11.57547 -11.49679 -10.91039 -10.63158 -9.91720 -9.05588 -8.80652 -6.53174 0.16614 0.37280 1.03345 1.50606 1.60348 1.64134 1.80626 2.28761 2.53040 2.66135 3.06764 3.26724 3.39008 3.65694 3.87808 3.94594 4.00609 4.04081 4.10712 4.18267 4.27501 4.29767 4.36266 4.46060 4.47128 4.60962 4.67878 4.73796 4.93300 4.94210 4.97171 5.06124 5.13845 5.22818 5.26678 5.33088 5.43634 5.56612 5.73024 5.77905 6.02895 6.40620 6.42921 6.58224 7.29821 8.60843 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.004137 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.439607 B = 6766.949237 C = 8342.890830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.348 6.348 3 C 0.108 3.892 4 C -0.195 4.195 5 C -0.065 4.065 6 C -0.126 4.126 7 C -0.077 4.077 8 C -0.159 4.159 9 C -0.040 4.040 10 H 0.144 0.856 11 C 0.460 3.540 12 O -0.535 6.535 13 O -0.364 6.364 14 C 0.097 3.903 15 C 0.017 3.983 16 C -0.627 4.627 17 H 0.057 0.943 18 C -0.031 4.031 19 N -0.928 5.928 20 Si 1.124 2.876 21 H -0.279 1.279 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.103 4.103 25 C -0.065 4.065 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.054 0.946 34 H -0.002 1.002 35 H 0.004 0.996 36 H 0.256 0.744 37 H 0.112 0.888 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 20.419 5.556 25.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.262 6.262 3 C 0.063 3.937 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.127 4.127 7 C -0.078 4.078 8 C -0.178 4.178 9 C -0.059 4.059 10 H 0.162 0.838 11 C 0.305 3.695 12 O -0.425 6.425 13 O -0.280 6.280 14 C 0.023 3.977 15 C -0.020 4.020 16 C -0.664 4.664 17 H 0.075 0.925 18 C -0.229 4.229 19 N -0.564 5.564 20 Si 0.943 3.057 21 H -0.204 1.204 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.141 4.141 25 C -0.102 4.102 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.178 0.822 30 H 0.182 0.818 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.017 0.983 35 H 0.022 0.978 36 H 0.066 0.934 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.141 18.807 4.857 23.452 hybrid contribution -0.454 0.840 0.409 1.038 sum -13.594 19.647 5.266 24.465 Atomic orbital electron populations 1.23369 0.76053 1.05451 1.02672 1.86097 1.23947 1.27345 1.88811 1.18991 0.91690 0.85433 0.97570 1.21495 1.01321 0.91218 1.07298 1.20783 0.92681 0.98157 0.96664 1.20846 0.94263 0.95354 1.02194 1.19909 0.93825 0.93241 1.00803 1.20032 0.92641 0.97993 1.07108 1.20948 0.90882 0.95028 0.99034 0.83817 1.24329 0.77854 0.81777 0.85581 1.90592 1.43816 1.75161 1.32914 1.86539 1.68227 1.20095 1.53136 1.22965 0.94514 0.90728 0.89457 1.19126 0.96201 0.89693 0.96970 1.22216 1.36549 0.94812 1.12871 0.92501 1.27587 0.97116 0.97231 1.01007 1.70904 1.32163 1.39469 1.13878 0.82871 0.75463 0.74488 0.72861 1.20407 1.19284 1.19055 1.22429 0.99728 0.89121 1.02776 1.21058 0.90447 0.94413 1.04262 0.87111 0.90733 0.91350 0.82194 0.81799 0.87776 0.91910 0.92761 0.98334 0.97807 0.93447 0.86960 0.90915 0.88164 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.35 -10.24 10.50 -92.41 -0.97 -11.21 16 3 C 0.11 3.12 6.68 22.48 0.15 3.27 16 4 C -0.19 -3.95 9.04 22.33 0.20 -3.75 16 5 C -0.07 -1.14 10.03 22.29 0.22 -0.92 16 6 C -0.13 -2.62 6.14 -19.57 -0.12 -2.74 16 7 C -0.08 -2.17 5.59 -19.60 -0.11 -2.28 16 8 C -0.16 -5.30 9.53 22.40 0.21 -5.09 16 9 C -0.04 -1.07 3.37 -11.61 -0.04 -1.11 16 10 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 11 C 0.46 17.14 7.22 71.24 0.51 17.65 16 12 O -0.53 -21.99 15.26 21.98 0.34 -21.65 16 13 O -0.36 -15.83 8.87 -51.44 -0.46 -16.29 16 14 C 0.10 4.69 5.40 71.98 0.39 5.08 16 15 C 0.02 0.97 4.66 29.85 0.14 1.11 16 16 C -0.63 -37.39 9.11 25.60 0.23 -37.16 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C -0.03 -1.85 5.46 84.65 0.46 -1.39 16 19 N -0.93 -58.91 13.65 21.45 0.29 -58.61 16 20 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 24 C -0.10 -2.00 6.32 31.50 0.20 -1.80 16 25 C -0.07 -0.92 6.77 30.52 0.21 -0.71 16 26 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 28 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 29 H 0.16 2.15 6.31 -2.91 -0.02 2.13 16 30 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.10 4.16 7.02 -2.91 -0.02 4.13 16 32 H 0.06 2.98 8.13 -2.39 -0.02 2.96 16 33 H 0.05 2.66 8.13 -2.39 -0.02 2.64 16 34 H 0.00 -0.10 8.01 -2.39 -0.02 -0.12 16 35 H 0.00 0.21 8.01 -2.38 -0.02 0.19 16 36 H 0.26 16.59 7.22 -92.71 -0.67 15.92 16 37 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.73 7.07 -2.39 -0.02 1.71 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -77.55 336.39 6.17 -71.38 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.14 Total: 11.81 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 3.78 Total: -28.40 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.29 Total: -58.61 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -1.09 Total: -49.15 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -77.55 6.17 -71.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763446512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.918 kcal (2) G-P(sol) polarization free energy of solvation -77.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds