Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99729 * 2 1 4 4 H 1.48504 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47528 * 300.00298 * 3 2 1 6 6 H 1.48507 * 109.47197 * 60.00021 * 3 2 1 7 7 C 1.37881 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 189.09553 * 7 2 1 9 9 C 1.50696 * 119.99752 * 9.09433 * 7 2 1 10 10 C 1.53002 * 115.55163 * 274.17028 * 9 7 2 11 11 O 1.45200 * 109.47000 * 294.51467 * 10 9 7 12 12 C 1.34224 * 117.00306 * 182.61314 * 11 10 9 13 13 O 1.20819 * 120.00005 * 5.50109 * 12 11 10 14 14 C 1.50704 * 120.00188 * 185.50789 * 12 11 10 15 15 H 1.08997 * 109.43091 * 25.44370 * 14 12 11 16 16 C 1.53028 * 109.43369 * 145.35231 * 14 12 11 17 17 C 1.53369 * 109.74316 * 191.82252 * 16 14 12 18 18 C 1.50946 * 108.20373 * 309.35497 * 17 16 14 19 19 N 1.30126 * 128.28783 * 196.74463 * 18 17 16 20 20 N 1.40318 * 108.12323 * 179.71280 * 19 18 17 21 21 H 0.97003 * 125.99879 * 180.02562 * 20 19 18 22 22 C 1.35194 * 107.99478 * 0.04703 * 20 19 18 23 23 C 1.34570 * 107.61807 * 0.03171 * 22 20 19 24 24 C 1.50885 * 128.32703 * 179.74114 * 23 22 20 25 25 C 1.53002 * 117.50051 * 59.84022 * 9 7 2 26 26 C 1.53005 * 117.49660 * 128.49963 * 9 7 2 27 27 H 0.97001 * 120.00245 * 5.01481 * 1 2 3 28 28 H 1.08998 * 109.47417 * 174.51982 * 10 9 7 29 29 H 1.08999 * 109.47169 * 54.51293 * 10 9 7 30 30 H 1.08997 * 109.42346 * 71.73094 * 16 14 12 31 31 H 1.09006 * 109.42079 * 311.90081 * 16 14 12 32 32 H 1.09003 * 109.71674 * 189.68339 * 17 16 14 33 33 H 1.08996 * 109.72225 * 69.03447 * 17 16 14 34 34 H 1.08005 * 126.19182 * 180.02562 * 22 20 19 35 35 H 1.09002 * 109.71394 * 316.30741 * 24 23 22 36 36 H 1.08993 * 109.72294 * 76.96200 * 24 23 22 37 37 H 1.08999 * 117.49821 * 215.00164 * 25 9 7 38 38 H 1.09003 * 117.49866 * 0.02562 * 25 9 7 39 39 H 1.08992 * 117.49695 * 359.97438 * 26 9 7 40 40 H 1.09008 * 117.49239 * 144.99563 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0744 -1.1999 0.1473 9 6 1.2653 -2.4908 -0.2074 10 6 0.6668 -3.1176 1.0535 11 8 1.7367 -3.5176 1.9498 12 6 1.3803 -4.1374 3.0859 13 8 0.2235 -4.4279 3.2782 14 6 2.4231 -4.4706 4.1216 15 1 3.2631 -3.7827 4.0248 16 6 1.8138 -4.3368 5.5189 17 6 2.9249 -4.3824 6.5752 18 6 3.7847 -5.5929 6.3031 19 7 4.6340 -6.1741 7.0996 20 7 5.1947 -7.2652 6.4185 21 1 5.8585 -7.8779 6.7720 22 6 4.6476 -7.3124 5.1831 23 6 3.7758 -6.2920 5.0845 24 6 2.9145 -5.9077 3.9068 25 6 0.4926 -2.6624 -1.5167 26 6 1.7913 -3.4394 -1.2866 27 1 -0.4850 0.8368 -0.0734 28 1 0.0764 -3.9920 0.7795 29 1 0.0275 -2.3895 1.5529 30 1 1.1166 -5.1569 5.6904 31 1 1.2818 -3.3883 5.5931 32 1 2.4844 -4.4602 7.5692 33 1 3.5310 -3.4788 6.5106 34 1 4.8701 -8.0377 4.4144 35 1 3.5004 -5.9627 2.9893 36 1 2.0609 -6.5821 3.8398 37 1 -0.4422 -3.2218 -1.4798 38 1 0.5193 -1.8375 -2.2287 39 1 2.6716 -3.1253 -1.8471 40 1 1.7108 -4.5101 -1.0981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764012901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = -1.850704 kcal Electronic energy + Delta-G solvation = -22820.376710 eV Core-core repulsion = 19409.026064 eV Total energy + Delta-G solvation = -3411.350646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61622 -39.85280 -37.11296 -36.13405 -35.11097 -32.39294 -31.95869 -30.65621 -29.09876 -26.85192 -25.33571 -24.68831 -22.81354 -21.19362 -21.16132 -20.02062 -19.25613 -18.78970 -17.78595 -17.04373 -16.48148 -15.64861 -15.46488 -15.21954 -14.59471 -14.54565 -14.02095 -13.80379 -13.49226 -13.20405 -12.99369 -12.86962 -12.33579 -12.11223 -11.86858 -11.72688 -11.60042 -11.09646 -11.03611 -10.91822 -10.81574 -10.50423 -10.42131 -10.29299 -9.90401 -9.82361 -9.52400 -9.51025 -8.79226 -8.56504 -8.44266 -8.21815 -6.07604 -4.11990 1.74475 2.58143 2.68641 2.77695 3.28080 3.35549 3.37418 3.41618 4.34250 4.40504 4.61871 4.74491 4.91099 5.04145 5.17763 5.23250 5.31386 5.35660 5.46597 5.50084 5.61026 5.70002 5.82489 5.91803 5.99685 6.03991 6.08622 6.25095 6.27532 6.34383 6.51003 6.54778 6.66933 6.73531 7.02203 7.11844 7.28033 7.36821 7.47645 7.52347 7.86988 8.36873 8.49129 8.90323 9.54049 11.02050 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.003763 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.734399 B = 7439.960941 C = 7847.649796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.488 4.488 8 H 0.064 0.936 9 C 0.038 3.962 10 C 0.115 3.885 11 O -0.336 6.336 12 C 0.459 3.541 13 O -0.522 6.522 14 C -0.078 4.078 15 H 0.106 0.894 16 C -0.101 4.101 17 C -0.038 4.038 18 C 0.086 3.914 19 N -0.291 5.291 20 N -0.487 5.487 21 H 0.438 0.562 22 C 0.063 3.937 23 C -0.229 4.229 24 C -0.029 4.029 25 C -0.148 4.148 26 C -0.205 4.205 27 H 0.261 0.739 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.177 0.823 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 -12.950 9.835 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.525 4.525 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.042 3.958 11 O -0.251 6.251 12 C 0.302 3.698 13 O -0.412 6.412 14 C -0.098 4.098 15 H 0.124 0.876 16 C -0.139 4.139 17 C -0.077 4.077 18 C -0.083 4.083 19 N -0.114 5.114 20 N -0.196 5.196 21 H 0.282 0.718 22 C -0.083 4.083 23 C -0.240 4.240 24 C -0.067 4.067 25 C -0.185 4.185 26 C -0.242 4.242 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.194 0.806 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.491 -12.887 11.036 18.547 hybrid contribution 0.245 0.481 -0.799 0.964 sum 7.736 -12.406 10.237 17.848 Atomic orbital electron populations 1.70030 1.05907 1.26943 1.48825 1.24990 0.94797 0.99028 0.94546 0.86589 0.80403 0.83788 0.77602 1.19579 1.20942 1.21041 1.20448 0.93608 0.88599 1.49858 0.91792 1.18792 0.98610 0.94304 0.84565 1.22905 0.86628 0.96465 0.89849 1.86538 1.41778 1.67524 1.29291 1.23470 0.89021 0.74779 0.82521 1.90601 1.21218 1.51246 1.78178 1.20989 0.97331 0.99089 0.92357 0.87626 1.21465 0.97168 1.04097 0.91173 1.20161 0.94721 0.92960 0.99849 1.22414 0.96115 0.97706 0.92062 1.76997 1.14044 1.00109 1.20218 1.46301 1.36601 1.25668 1.11007 0.71831 1.22037 0.96611 1.00269 0.89362 1.19988 1.05907 1.00290 0.97858 1.19883 0.97957 0.93656 0.95251 1.22550 0.92847 1.01181 1.01926 1.23002 0.98042 0.95730 1.07410 0.92967 0.94329 0.90576 0.90293 0.90099 0.89412 0.89251 0.80560 0.89923 0.90435 0.91617 0.89514 0.90064 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.61 12.98 55.43 0.72 -23.89 16 2 C 0.07 1.88 5.37 -17.82 -0.10 1.78 16 3 Si 0.89 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.49 -13.16 8.77 -34.44 -0.30 -13.46 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 C 0.04 0.93 1.60 -155.66 -0.25 0.68 16 10 C 0.11 2.71 5.35 37.16 0.20 2.90 16 11 O -0.34 -7.25 10.16 -39.24 -0.40 -7.65 16 12 C 0.46 8.54 6.91 36.01 0.25 8.79 16 13 O -0.52 -10.87 16.14 -18.74 -0.30 -11.17 16 14 C -0.08 -1.09 2.56 -91.55 -0.23 -1.33 16 15 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 16 C -0.10 -1.24 4.69 -26.53 -0.12 -1.37 16 17 C -0.04 -0.41 6.31 -27.57 -0.17 -0.58 16 18 C 0.09 1.05 7.10 -82.34 -0.58 0.46 16 19 N -0.29 -3.61 12.68 33.75 0.43 -3.18 16 20 N -0.49 -4.48 7.37 30.35 0.22 -4.25 16 21 H 0.44 2.47 8.96 -182.43 -1.64 0.83 16 22 C 0.06 0.57 11.95 -17.37 -0.21 0.36 16 23 C -0.23 -2.62 5.89 -104.98 -0.62 -3.24 16 24 C -0.03 -0.35 5.56 -27.59 -0.15 -0.50 16 25 C -0.15 -3.39 9.47 -26.69 -0.25 -3.64 16 26 C -0.20 -4.40 9.96 -26.69 -0.27 -4.66 16 27 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 28 H 0.04 0.86 7.98 -51.93 -0.41 0.45 16 29 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 30 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 39 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 40 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 340.37 15.07 5.13 5.13 Total: -1.00 -32.03 340.37 -9.12 -41.16 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.08 Total: 1.86 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.81 Total: -13.80 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 1.37 Total: -31.33 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.70 Total: -18.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.03 -9.12 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764012901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.305 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds