Wall clock time and date at job start Tue Mar 31 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99729 * 2 1 4 4 H 1.48504 * 109.47378 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47528 * 300.00298 * 3 2 1 6 6 H 1.48507 * 109.47197 * 60.00021 * 3 2 1 7 7 C 1.37881 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99874 * 189.09553 * 7 2 1 9 9 C 1.50696 * 119.99752 * 9.09433 * 7 2 1 10 10 C 1.53002 * 115.55163 * 274.17028 * 9 7 2 11 11 O 1.45200 * 109.47000 * 294.51467 * 10 9 7 12 12 C 1.34224 * 117.00306 * 182.61314 * 11 10 9 13 13 O 1.20819 * 120.00005 * 5.50109 * 12 11 10 14 14 C 1.50704 * 120.00188 * 185.50789 * 12 11 10 15 15 H 1.08997 * 109.43091 * 25.44370 * 14 12 11 16 16 C 1.53028 * 109.43369 * 145.35231 * 14 12 11 17 17 C 1.53369 * 109.74316 * 191.82252 * 16 14 12 18 18 C 1.50946 * 108.20373 * 309.35497 * 17 16 14 19 19 N 1.30126 * 128.28783 * 196.74463 * 18 17 16 20 20 N 1.40318 * 108.12323 * 179.71280 * 19 18 17 21 21 H 0.97003 * 125.99879 * 180.02562 * 20 19 18 22 22 C 1.35194 * 107.99478 * 0.04703 * 20 19 18 23 23 C 1.34570 * 107.61807 * 0.03171 * 22 20 19 24 24 C 1.50885 * 128.32703 * 179.74114 * 23 22 20 25 25 C 1.53002 * 117.50051 * 59.84022 * 9 7 2 26 26 C 1.53005 * 117.49660 * 128.49963 * 9 7 2 27 27 H 0.97001 * 120.00245 * 5.01481 * 1 2 3 28 28 H 1.08998 * 109.47417 * 174.51982 * 10 9 7 29 29 H 1.08999 * 109.47169 * 54.51293 * 10 9 7 30 30 H 1.08997 * 109.42346 * 71.73094 * 16 14 12 31 31 H 1.09006 * 109.42079 * 311.90081 * 16 14 12 32 32 H 1.09003 * 109.71674 * 189.68339 * 17 16 14 33 33 H 1.08996 * 109.72225 * 69.03447 * 17 16 14 34 34 H 1.08005 * 126.19182 * 180.02562 * 22 20 19 35 35 H 1.09002 * 109.71394 * 316.30741 * 24 23 22 36 36 H 1.08993 * 109.72294 * 76.96200 * 24 23 22 37 37 H 1.08999 * 117.49821 * 215.00164 * 25 9 7 38 38 H 1.09003 * 117.49866 * 0.02562 * 25 9 7 39 39 H 1.08992 * 117.49695 * 359.97438 * 26 9 7 40 40 H 1.09008 * 117.49239 * 144.99563 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0744 -1.1999 0.1473 9 6 1.2653 -2.4908 -0.2074 10 6 0.6668 -3.1176 1.0535 11 8 1.7367 -3.5176 1.9498 12 6 1.3803 -4.1374 3.0859 13 8 0.2235 -4.4279 3.2782 14 6 2.4231 -4.4706 4.1216 15 1 3.2631 -3.7827 4.0248 16 6 1.8138 -4.3368 5.5189 17 6 2.9249 -4.3824 6.5752 18 6 3.7847 -5.5929 6.3031 19 7 4.6340 -6.1741 7.0996 20 7 5.1947 -7.2652 6.4185 21 1 5.8585 -7.8779 6.7720 22 6 4.6476 -7.3124 5.1831 23 6 3.7758 -6.2920 5.0845 24 6 2.9145 -5.9077 3.9068 25 6 0.4926 -2.6624 -1.5167 26 6 1.7913 -3.4394 -1.2866 27 1 -0.4850 0.8368 -0.0734 28 1 0.0764 -3.9920 0.7795 29 1 0.0275 -2.3895 1.5529 30 1 1.1166 -5.1569 5.6904 31 1 1.2818 -3.3883 5.5931 32 1 2.4844 -4.4602 7.5692 33 1 3.5310 -3.4788 6.5106 34 1 4.8701 -8.0377 4.4144 35 1 3.5004 -5.9627 2.9893 36 1 2.0609 -6.5821 3.8398 37 1 -0.4422 -3.2218 -1.4798 38 1 0.5193 -1.8375 -2.2287 39 1 2.6716 -3.1253 -1.8471 40 1 1.7108 -4.5101 -1.0981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764012901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:56 Heat of formation + Delta-G solvation = -19.811770 kcal Electronic energy + Delta-G solvation = -22821.155560 eV Core-core repulsion = 19409.026064 eV Total energy + Delta-G solvation = -3412.129496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.45496 -41.36949 -38.73765 -37.43399 -36.72705 -34.00449 -33.26695 -31.53518 -30.11102 -28.55997 -27.29570 -25.70312 -23.99220 -22.94726 -21.98641 -21.31246 -21.15677 -19.75315 -18.60107 -18.55282 -18.28802 -17.14664 -17.06626 -16.53115 -16.21027 -15.67602 -15.47250 -14.93476 -14.82502 -14.37264 -14.13059 -14.07448 -13.68183 -13.55630 -13.38731 -13.00417 -12.97383 -12.86232 -12.72520 -12.36063 -12.10301 -12.06270 -11.91987 -11.61482 -11.60580 -11.35029 -11.17259 -10.70283 -10.46533 -10.32502 -10.06745 -9.36546 -8.12761 -6.22910 0.99157 1.25269 1.42155 1.45600 1.56473 1.76049 1.85493 2.04086 2.44960 3.16221 3.37616 3.49726 3.70014 3.80093 3.90015 4.09694 4.17958 4.25927 4.35940 4.42466 4.48312 4.51393 4.61374 4.68816 4.71234 4.76029 4.85907 4.96382 4.98602 5.01112 5.10967 5.18623 5.20167 5.27146 5.48299 5.60067 5.66481 5.75900 5.78257 6.38045 6.50933 6.74445 6.82835 6.89291 7.45950 8.96648 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.003763 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.734399 B = 7439.960941 C = 7847.649796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.284 1.284 7 C -0.502 4.502 8 H 0.055 0.945 9 C 0.004 3.996 10 C 0.128 3.872 11 O -0.347 6.347 12 C 0.458 3.542 13 O -0.547 6.547 14 C -0.071 4.071 15 H 0.110 0.890 16 C -0.095 4.095 17 C -0.032 4.032 18 C 0.071 3.929 19 N -0.322 5.322 20 N -0.477 5.477 21 H 0.453 0.547 22 C 0.084 3.916 23 C -0.258 4.258 24 C -0.019 4.019 25 C -0.149 4.149 26 C -0.176 4.176 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.217 0.783 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.233 -14.236 10.058 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.004 3.996 10 C 0.054 3.946 11 O -0.262 6.262 12 C 0.303 3.697 13 O -0.438 6.438 14 C -0.090 4.090 15 H 0.129 0.871 16 C -0.133 4.133 17 C -0.071 4.071 18 C -0.097 4.097 19 N -0.145 5.145 20 N -0.187 5.187 21 H 0.300 0.700 22 C -0.063 4.063 23 C -0.269 4.269 24 C -0.058 4.058 25 C -0.187 4.187 26 C -0.213 4.213 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.233 0.767 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.280 -14.189 11.279 20.363 hybrid contribution -0.280 0.793 -0.831 1.182 sum 9.000 -13.396 10.448 19.225 Atomic orbital electron populations 1.70130 1.07124 1.27604 1.49812 1.25682 0.95516 1.02015 0.94331 0.85650 0.79410 0.79979 0.77517 1.18954 1.20412 1.21064 1.20686 0.93407 0.90076 1.49753 0.92639 1.18888 1.00302 0.94867 0.85585 1.22503 0.86697 0.95738 0.89685 1.86549 1.41194 1.68180 1.30308 1.24430 0.89805 0.73395 0.82091 1.90583 1.22663 1.52150 1.78420 1.21128 0.95897 1.00721 0.91290 0.87144 1.21421 0.97649 1.03515 0.90763 1.20122 0.94133 0.93171 0.99671 1.22593 0.96396 0.98152 0.92523 1.76933 1.14906 1.01473 1.21227 1.46360 1.36354 1.24994 1.10963 0.70000 1.22594 0.94543 0.99571 0.89569 1.20020 1.07530 1.01897 0.97461 1.19779 0.98073 0.91781 0.96148 1.22495 0.94247 1.01280 1.00680 1.23014 0.97197 0.96513 1.04597 0.93012 0.93507 0.94162 0.90783 0.90782 0.88168 0.88516 0.76660 0.89106 0.90830 0.90459 0.91174 0.89515 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.69 12.98 21.45 0.28 -51.41 16 2 C 0.02 1.35 5.37 84.66 0.45 1.80 16 3 Si 0.95 42.95 29.55 68.60 2.03 44.98 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 7 C -0.50 -27.24 8.77 25.60 0.22 -27.02 16 8 H 0.06 3.02 7.83 -2.91 -0.02 3.00 16 9 C 0.00 0.20 1.60 -52.93 -0.08 0.11 16 10 C 0.13 6.10 5.35 71.98 0.39 6.49 16 11 O -0.35 -15.04 10.16 -51.36 -0.52 -15.56 16 12 C 0.46 17.11 6.91 71.24 0.49 17.60 16 13 O -0.55 -23.10 16.14 21.98 0.35 -22.74 16 14 C -0.07 -1.94 2.56 -11.40 -0.03 -1.97 16 15 H 0.11 2.91 8.10 -2.39 -0.02 2.89 16 16 C -0.10 -2.31 4.69 30.73 0.14 -2.17 16 17 C -0.03 -0.66 6.31 30.05 0.19 -0.47 16 18 C 0.07 1.63 7.10 43.44 0.31 1.94 16 19 N -0.32 -7.42 12.68 -47.13 -0.60 -8.02 16 20 N -0.48 -7.46 7.37 -57.88 -0.43 -7.88 16 21 H 0.45 3.81 8.96 -213.18 -1.91 1.89 16 22 C 0.08 1.24 11.95 83.33 1.00 2.23 16 23 C -0.26 -5.34 5.89 -20.10 -0.12 -5.46 16 24 C -0.02 -0.44 5.56 30.04 0.17 -0.27 16 25 C -0.15 -6.82 9.47 30.62 0.29 -6.53 16 26 C -0.18 -7.30 9.96 30.62 0.30 -6.99 16 27 H 0.26 14.14 8.32 -92.71 -0.77 13.37 16 28 H 0.05 2.11 7.98 -2.39 -0.02 2.09 16 29 H 0.04 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.07 1.87 8.08 -2.38 -0.02 1.85 16 32 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 38 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -69.08 340.37 3.98 -65.10 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -0.86 Total: 16.23 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 3.72 Total: -20.70 kcal Atomic # 7 Polarization: -66.57 SS G_CDS: -0.75 Total: -67.31 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.17 Total: -38.30 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -69.08 3.98 -65.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764012901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.293 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds