Wall clock time and date at job start Tue Mar 31 2020 06:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00285 * 2 1 4 4 H 1.48498 * 109.47042 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47308 * 119.99960 * 3 2 1 6 6 H 1.48504 * 109.46858 * 239.99855 * 3 2 1 7 7 C 1.37877 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00188 * 185.81138 * 7 2 1 9 9 C 1.50705 * 119.99884 * 5.81487 * 7 2 1 10 10 C 1.52993 * 115.55017 * 270.15927 * 9 7 2 11 11 O 1.45198 * 109.47215 * 294.41733 * 10 9 7 12 12 C 1.34223 * 117.00596 * 184.54579 * 11 10 9 13 13 O 1.20828 * 119.99502 * 4.93552 * 12 11 10 14 14 C 1.50703 * 120.00456 * 184.93821 * 12 11 10 15 15 H 1.08993 * 109.42772 * 310.29119 * 14 12 11 16 16 C 1.53026 * 109.42901 * 190.39229 * 14 12 11 17 17 C 1.53373 * 109.74565 * 168.19554 * 16 14 12 18 18 C 1.50942 * 108.20537 * 50.64944 * 17 16 14 19 19 N 1.30129 * 128.28637 * 163.36643 * 18 17 16 20 20 N 1.40313 * 108.12255 * 180.12414 * 19 18 17 21 21 H 0.97005 * 126.00282 * 179.97438 * 20 19 18 22 22 C 1.35194 * 107.99680 * 359.96031 * 20 19 18 23 23 C 1.34575 * 107.61504 * 359.96430 * 22 20 19 24 24 C 1.50883 * 128.32792 * 180.30455 * 23 22 20 25 25 C 1.52999 * 117.49889 * 124.48701 * 9 7 2 26 26 C 1.52997 * 117.49633 * 55.82712 * 9 7 2 27 27 H 0.97008 * 119.99628 * 354.99357 * 1 2 3 28 28 H 1.08996 * 109.47210 * 54.41580 * 10 9 7 29 29 H 1.09000 * 109.47255 * 174.41773 * 10 9 7 30 30 H 1.08997 * 109.42935 * 288.28019 * 16 14 12 31 31 H 1.09000 * 109.42281 * 48.11501 * 16 14 12 32 32 H 1.09003 * 109.71848 * 170.33463 * 17 16 14 33 33 H 1.09006 * 109.71827 * 290.97311 * 17 16 14 34 34 H 1.08001 * 126.19538 * 179.97438 * 22 20 19 35 35 H 1.09008 * 109.71716 * 43.55929 * 24 23 22 36 36 H 1.08992 * 109.71893 * 282.91135 * 24 23 22 37 37 H 1.09003 * 117.50194 * 359.97438 * 25 9 7 38 38 H 1.08998 * 117.49841 * 145.02012 * 25 9 7 39 39 H 1.08995 * 117.50046 * 214.97589 * 26 9 7 40 40 H 1.08996 * 117.50286 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0803 -1.1965 0.0952 9 6 1.2568 -2.4959 -0.1311 10 6 0.8049 -3.1333 1.1843 11 8 1.9697 -3.5308 1.9547 12 6 1.7456 -4.1942 3.0998 13 8 0.6203 -4.5130 3.4030 14 6 2.8975 -4.5412 4.0075 15 1 3.6877 -5.0152 3.4254 16 6 2.4169 -5.5060 5.0937 17 6 3.6236 -6.0927 5.8366 18 6 4.5150 -4.9517 6.2633 19 7 5.4656 -4.9600 7.1519 20 7 6.0168 -3.6712 7.2135 21 1 6.7429 -3.3885 7.7913 22 6 5.3584 -2.8925 6.3259 23 6 4.4279 -3.6569 5.7252 24 6 3.4401 -3.2612 4.6554 25 6 1.6682 -3.4352 -1.2666 26 6 0.3463 -2.6676 -1.3487 27 1 -0.4850 0.8369 0.0733 28 1 0.2204 -2.4121 1.7555 29 1 0.1932 -4.0101 0.9719 30 1 1.7822 -4.9702 5.7995 31 1 1.8462 -6.3134 4.6348 32 1 3.2836 -6.6419 6.7146 33 1 4.1738 -6.7612 5.1743 34 1 5.5453 -1.8463 6.1336 35 1 3.9384 -2.6506 3.9024 36 1 2.6201 -2.6989 5.1019 37 1 2.4794 -3.1114 -1.9188 38 1 1.6166 -4.5072 -1.0766 39 1 -0.5743 -3.2350 -1.2127 40 1 0.2878 -1.8389 -2.0543 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764012904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:59 Heat of formation + Delta-G solvation = -1.474073 kcal Electronic energy + Delta-G solvation = -22917.050917 eV Core-core repulsion = 19505.716603 eV Total energy + Delta-G solvation = -3411.334314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.57247 -39.87013 -37.10073 -36.12369 -35.14472 -32.36081 -31.93838 -30.59310 -29.09298 -26.84135 -25.30313 -24.65720 -22.81816 -21.16068 -21.09900 -20.00059 -19.25281 -18.80373 -17.73805 -17.00589 -16.44050 -15.76874 -15.44560 -15.19625 -14.66859 -14.44541 -13.92584 -13.76155 -13.58099 -13.25264 -12.90094 -12.76990 -12.27248 -12.17003 -11.88655 -11.64527 -11.62828 -11.05401 -10.95602 -10.92392 -10.84418 -10.55620 -10.39020 -10.26375 -9.91257 -9.84962 -9.49447 -9.48286 -8.83984 -8.50449 -8.45415 -8.20024 -6.05673 -4.12076 1.79300 2.63065 2.71580 2.77917 3.28398 3.34266 3.35615 3.36529 4.34135 4.38079 4.67001 4.78652 4.93089 5.08490 5.17545 5.23434 5.32146 5.37464 5.47053 5.50599 5.66614 5.74462 5.85916 5.96312 5.99826 6.09469 6.17271 6.26490 6.27658 6.34220 6.54200 6.56478 6.68042 6.75782 7.06056 7.16526 7.26087 7.38749 7.51501 7.56187 7.86517 8.36966 8.47330 8.89508 9.53322 11.02622 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.004309 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.924993 B = 6496.882133 C = 7615.814674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.069 3.931 3 Si 0.892 3.108 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.489 4.489 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.115 3.885 11 O -0.336 6.336 12 C 0.458 3.542 13 O -0.523 6.523 14 C -0.077 4.077 15 H 0.106 0.894 16 C -0.100 4.100 17 C -0.037 4.037 18 C 0.083 3.917 19 N -0.293 5.293 20 N -0.487 5.487 21 H 0.438 0.562 22 C 0.064 3.936 23 C -0.228 4.228 24 C -0.032 4.032 25 C -0.207 4.207 26 C -0.141 4.141 27 H 0.262 0.738 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.750 -7.455 11.210 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.134 4.134 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.526 4.526 8 H 0.081 0.919 9 C 0.035 3.965 10 C 0.042 3.958 11 O -0.251 6.251 12 C 0.301 3.699 13 O -0.413 6.413 14 C -0.096 4.096 15 H 0.124 0.876 16 C -0.138 4.138 17 C -0.076 4.076 18 C -0.086 4.086 19 N -0.115 5.115 20 N -0.196 5.196 21 H 0.282 0.718 22 C -0.082 4.082 23 C -0.240 4.240 24 C -0.070 4.070 25 C -0.244 4.244 26 C -0.178 4.178 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.196 0.804 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.868 -8.082 12.011 16.977 hybrid contribution 0.229 1.760 -0.238 1.790 sum 9.096 -6.322 11.772 16.165 Atomic orbital electron populations 1.69974 1.05886 1.26998 1.49079 1.25012 0.94848 0.98988 0.94515 0.86662 0.79628 0.83004 0.78740 1.21323 1.20179 1.20139 1.20349 0.93054 0.88234 1.51001 0.91898 1.18781 0.99310 0.94245 0.84150 1.22904 0.83851 0.96439 0.92590 1.86537 1.40567 1.65914 1.32036 1.23505 0.90032 0.75102 0.81278 1.90604 1.25199 1.51776 1.73727 1.20999 0.95571 0.98095 0.94929 0.87638 1.21455 0.96685 0.98846 0.96839 1.20152 0.93639 0.93321 1.00492 1.22399 0.95443 0.96142 0.94610 1.76969 1.13349 0.98973 1.22235 1.46296 1.31614 1.07383 1.34295 0.71843 1.22088 0.94859 0.98043 0.93174 1.20033 1.04076 0.93866 1.05998 1.19908 0.96536 0.95432 0.95125 1.23031 0.99240 0.95757 1.06388 1.22503 0.91581 1.00968 1.02749 0.92842 0.90973 0.94190 0.90527 0.89935 0.89506 0.89503 0.80447 0.89158 0.90517 0.90117 0.91643 0.91732 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.49 12.69 55.43 0.70 -23.78 16 2 C 0.07 1.86 5.37 -17.82 -0.10 1.76 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.49 -13.05 8.80 -34.44 -0.30 -13.35 16 8 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 9 C 0.04 0.87 1.69 -155.66 -0.26 0.61 16 10 C 0.12 2.69 5.38 37.15 0.20 2.89 16 11 O -0.34 -7.10 10.16 -39.24 -0.40 -7.50 16 12 C 0.46 8.39 7.15 36.01 0.26 8.64 16 13 O -0.52 -10.73 15.59 -18.75 -0.29 -11.02 16 14 C -0.08 -1.05 2.57 -91.56 -0.24 -1.29 16 15 H 0.11 1.32 8.10 -51.93 -0.42 0.90 16 16 C -0.10 -1.19 4.57 -26.52 -0.12 -1.31 16 17 C -0.04 -0.38 6.31 -27.57 -0.17 -0.55 16 18 C 0.08 1.02 7.10 -82.35 -0.58 0.44 16 19 N -0.29 -3.69 12.68 33.75 0.43 -3.26 16 20 N -0.49 -4.76 7.37 30.35 0.22 -4.54 16 21 H 0.44 2.73 8.96 -182.43 -1.64 1.10 16 22 C 0.06 0.64 11.95 -17.37 -0.21 0.43 16 23 C -0.23 -2.77 5.89 -104.98 -0.62 -3.39 16 24 C -0.03 -0.42 5.56 -27.59 -0.15 -0.57 16 25 C -0.21 -4.49 9.96 -26.69 -0.27 -4.76 16 26 C -0.14 -3.26 9.13 -26.69 -0.24 -3.50 16 27 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 28 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 29 H 0.04 0.89 7.93 -51.93 -0.41 0.48 16 30 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.08 1.05 8.12 -51.93 -0.42 0.62 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 LS Contribution 339.19 15.07 5.11 5.11 Total: -1.00 -31.52 339.19 -9.12 -40.64 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.07 Total: 2.73 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -2.81 Total: -13.95 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 1.36 Total: -31.58 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.69 Total: -18.53 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.52 -9.12 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764012904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.169 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds