Wall clock time and date at job start Tue Mar 31 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46991 * 2 1 4 4 O 1.45208 * 109.46860 * 119.99717 * 2 1 3 5 5 C 1.34229 * 116.99784 * 270.00031 * 4 2 1 6 6 O 1.20830 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99937 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47208 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96230 * 269.97915 * 8 7 5 10 10 C 1.38281 * 120.13505 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96534 * 89.99715 * 8 7 5 23 23 C 1.52997 * 109.47209 * 239.99235 * 2 1 3 24 24 C 1.52995 * 117.50215 * 248.62297 * 23 2 1 25 25 C 1.53004 * 117.49916 * 179.97438 * 23 2 1 26 26 H 1.08999 * 109.46950 * 300.00430 * 1 2 3 27 27 H 1.09000 * 109.46325 * 60.00354 * 1 2 3 28 28 H 1.08995 * 109.46991 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46571 * 59.99926 * 7 5 4 30 30 H 1.08992 * 109.46782 * 300.00190 * 7 5 4 31 31 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 32 32 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.03256 * 180.31909 * 11 10 9 34 34 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03547 * 0.02562 * 22 8 7 36 36 H 1.09007 * 115.54997 * 34.33977 * 23 2 1 37 37 H 1.09001 * 117.50088 * 0.02562 * 24 23 2 38 38 H 1.09004 * 117.50064 * 145.02107 * 24 23 2 39 39 H 1.08993 * 117.50424 * 214.98045 * 25 23 2 40 40 H 1.09000 * 117.49472 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2171 0.0641 2.2812 6 8 1.9973 1.2518 2.2506 7 6 2.7181 -0.5771 3.5497 8 6 2.8601 0.4730 4.6212 9 6 4.0553 1.1539 4.7673 10 6 4.1896 2.1177 5.7497 11 6 3.1279 2.4081 6.5840 12 6 1.9286 1.7224 6.4436 13 8 0.8853 2.0013 7.2661 14 6 1.1149 2.8665 8.2743 15 1 2.0698 3.3653 8.3510 16 6 0.1252 3.1159 9.2128 17 7 -1.0378 2.5080 9.1197 18 14 0.4436 4.3140 10.6101 19 1 0.0436 5.6812 10.1906 20 1 -0.3485 3.9095 11.7993 21 1 1.8889 4.3039 10.9512 22 6 1.7971 0.7543 5.4563 23 6 2.0401 -0.7214 -1.2491 24 6 2.7419 -2.0664 -1.0511 25 6 3.5551 -0.8277 -1.4344 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6870 -1.0407 3.3641 30 1 2.0086 -1.3367 3.8775 31 1 4.8853 0.9322 4.1128 32 1 5.1241 2.6473 5.8616 33 1 3.2318 3.1646 7.3478 34 1 -1.7300 2.6822 9.7765 35 1 0.8644 0.2219 5.3421 36 1 1.4312 -0.5980 -2.1448 37 1 2.8400 -2.4376 -0.0310 38 1 2.5947 -2.8284 -1.8165 39 1 3.9427 -0.7752 -2.4518 40 1 4.1884 -0.3841 -0.6662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764385212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:31 Heat of formation + Delta-G solvation = -69.684945 kcal Electronic energy + Delta-G solvation = -22287.943941 eV Core-core repulsion = 18841.359030 eV Total energy + Delta-G solvation = -3446.584910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60618 -39.03862 -37.92113 -36.56348 -35.65631 -32.50818 -32.13938 -31.34810 -29.23958 -27.37635 -25.28380 -24.36976 -22.68923 -22.13360 -21.58515 -20.56276 -19.96478 -17.66868 -17.60918 -17.03632 -16.51511 -16.00847 -15.50122 -15.05317 -14.60431 -14.52754 -14.37872 -13.64297 -13.60870 -13.51197 -12.93745 -12.77336 -12.59877 -12.43840 -12.09830 -11.88951 -11.69897 -11.56659 -11.40830 -11.27333 -10.98263 -10.84758 -10.80415 -10.63691 -10.45027 -10.43340 -10.30681 -10.03395 -9.33756 -8.82709 -8.11007 -7.22787 -6.42878 -4.02024 1.97765 2.36839 2.40770 2.83244 3.14644 3.14871 3.19766 3.55060 3.98019 4.31928 4.52591 4.61614 4.71293 4.82611 4.91458 4.99564 5.10826 5.12992 5.18020 5.25338 5.43501 5.48099 5.57565 5.63097 5.68814 5.70764 5.75068 5.86539 5.92152 5.98384 6.02323 6.16397 6.32639 6.53854 6.66437 6.90350 7.07081 7.23342 7.36009 7.43719 7.80583 7.94749 8.01905 9.02753 9.72931 10.75303 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.003070 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.189540 B = 9119.691435 C = 9663.646900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 H 0.088 0.912 4 O -0.356 6.356 5 C 0.459 3.541 6 O -0.489 6.489 7 C -0.065 4.065 8 C -0.044 4.044 9 C -0.195 4.195 10 C -0.074 4.074 11 C -0.228 4.228 12 C 0.154 3.846 13 O -0.179 6.179 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.267 1.267 22 C -0.172 4.172 23 C -0.160 4.160 24 C -0.165 4.165 25 C -0.178 4.178 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.270 0.730 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -7.766 -17.008 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.106 0.894 4 O -0.274 6.274 5 C 0.301 3.699 6 O -0.374 6.374 7 C -0.102 4.102 8 C -0.044 4.044 9 C -0.214 4.214 10 C -0.093 4.093 11 C -0.247 4.247 12 C 0.101 3.899 13 O -0.082 6.082 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.191 4.191 23 C -0.178 4.178 24 C -0.201 4.201 25 C -0.215 4.215 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.937 -7.469 -16.903 19.739 hybrid contribution 0.103 0.838 0.593 1.031 sum 7.040 -6.631 -16.310 18.962 Atomic orbital electron populations 1.22149 0.93924 1.03047 1.03236 1.22074 0.94340 0.96450 0.81184 0.89433 1.86540 1.77504 1.42818 1.20557 1.23838 0.74788 0.86274 0.85023 1.90710 1.46461 1.16573 1.83643 1.20263 1.03782 0.98078 0.88074 1.18667 0.94193 0.96707 0.94822 1.20366 0.97178 1.01668 1.02177 1.20685 0.97474 0.96436 0.94665 1.21202 0.94158 1.05029 1.04299 1.19260 0.87639 0.92240 0.90784 1.83977 1.30685 1.57094 1.36455 1.21321 1.01772 1.20560 1.03125 0.89091 1.25280 0.94777 0.98227 0.98225 1.70037 1.03962 1.40486 1.35367 0.85717 0.78734 0.79517 0.79481 1.19896 1.20258 1.19199 1.19965 0.98936 1.01496 0.98746 1.22438 0.95610 1.01863 0.97859 1.22921 1.03076 0.90641 1.03502 1.22982 0.93156 1.02793 1.02613 0.91544 0.90875 0.91464 0.87305 0.87109 0.87791 0.87337 0.85511 0.92051 0.86663 0.86221 0.87486 0.88932 0.88674 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.53 37.16 0.35 -1.39 16 2 C 0.11 1.30 2.92 -26.73 -0.08 1.22 16 3 H 0.09 1.12 7.16 -51.93 -0.37 0.75 16 4 O -0.36 -4.53 8.23 -39.25 -0.32 -4.85 16 5 C 0.46 6.93 7.92 36.01 0.29 7.21 16 6 O -0.49 -9.24 15.25 -18.75 -0.29 -9.52 16 7 C -0.06 -0.88 5.94 -29.03 -0.17 -1.06 16 8 C -0.04 -0.79 4.37 -104.65 -0.46 -1.25 16 9 C -0.19 -3.48 9.70 -39.53 -0.38 -3.86 16 10 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 11 C -0.23 -5.10 9.17 -39.40 -0.36 -5.46 16 12 C 0.15 3.84 6.65 -39.11 -0.26 3.58 16 13 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 14 C -0.39 -11.12 9.49 30.89 0.29 -10.82 16 15 H 0.09 2.39 5.21 -52.49 -0.27 2.12 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.61 13.67 55.48 0.76 -24.85 16 18 Si 0.94 20.76 29.55 -169.99 -5.02 15.73 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 C -0.17 -3.75 9.65 -39.39 -0.38 -4.13 16 23 C -0.16 -1.41 5.71 -90.62 -0.52 -1.93 16 24 C -0.16 -1.37 9.88 -26.71 -0.26 -1.63 16 25 C -0.18 -1.50 10.20 -26.70 -0.27 -1.77 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.11 1.16 8.09 -51.93 -0.42 0.74 16 30 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 31 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 36 H 0.12 0.86 8.11 -51.93 -0.42 0.44 16 37 H 0.11 0.99 7.04 -51.93 -0.37 0.62 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -32.82 345.09 -7.89 -40.71 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.51 Total: 4.90 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: -2.71 Total: -22.11 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.76 Total: -24.85 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.61 Total: -19.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.82 -7.89 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764385212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.979 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds