Wall clock time and date at job start Tue Mar 31 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46991 * 2 1 4 4 O 1.45208 * 109.46860 * 119.99717 * 2 1 3 5 5 C 1.34229 * 116.99784 * 270.00031 * 4 2 1 6 6 O 1.20830 * 119.99962 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99937 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47208 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96230 * 269.97915 * 8 7 5 10 10 C 1.38281 * 120.13505 * 180.02562 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46814 * 90.00164 * 18 16 14 20 20 H 1.48501 * 109.47378 * 210.00272 * 18 16 14 21 21 H 1.48503 * 109.47143 * 330.00397 * 18 16 14 22 22 C 1.38073 * 119.96534 * 89.99715 * 8 7 5 23 23 C 1.52997 * 109.47209 * 239.99235 * 2 1 3 24 24 C 1.52995 * 117.50215 * 248.62297 * 23 2 1 25 25 C 1.53004 * 117.49916 * 179.97438 * 23 2 1 26 26 H 1.08999 * 109.46950 * 300.00430 * 1 2 3 27 27 H 1.09000 * 109.46325 * 60.00354 * 1 2 3 28 28 H 1.08995 * 109.46991 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46571 * 59.99926 * 7 5 4 30 30 H 1.08992 * 109.46782 * 300.00190 * 7 5 4 31 31 H 1.08001 * 119.93314 * 0.02562 * 9 8 7 32 32 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 33 33 H 1.08001 * 120.03256 * 180.31909 * 11 10 9 34 34 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 35 35 H 1.07996 * 120.03547 * 0.02562 * 22 8 7 36 36 H 1.09007 * 115.54997 * 34.33977 * 23 2 1 37 37 H 1.09001 * 117.50088 * 0.02562 * 24 23 2 38 38 H 1.09004 * 117.50064 * 145.02107 * 24 23 2 39 39 H 1.08993 * 117.50424 * 214.98045 * 25 23 2 40 40 H 1.09000 * 117.49472 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 1.1857 5 6 2.2171 0.0641 2.2812 6 8 1.9973 1.2518 2.2506 7 6 2.7181 -0.5771 3.5497 8 6 2.8601 0.4730 4.6212 9 6 4.0553 1.1539 4.7673 10 6 4.1896 2.1177 5.7497 11 6 3.1279 2.4081 6.5840 12 6 1.9286 1.7224 6.4436 13 8 0.8853 2.0013 7.2661 14 6 1.1149 2.8665 8.2743 15 1 2.0698 3.3653 8.3510 16 6 0.1252 3.1159 9.2128 17 7 -1.0378 2.5080 9.1197 18 14 0.4436 4.3140 10.6101 19 1 0.0436 5.6812 10.1906 20 1 -0.3485 3.9095 11.7993 21 1 1.8889 4.3039 10.9512 22 6 1.7971 0.7543 5.4563 23 6 2.0401 -0.7214 -1.2491 24 6 2.7419 -2.0664 -1.0511 25 6 3.5551 -0.8277 -1.4344 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 3.6870 -1.0407 3.3641 30 1 2.0086 -1.3367 3.8775 31 1 4.8853 0.9322 4.1128 32 1 5.1241 2.6473 5.8616 33 1 3.2318 3.1646 7.3478 34 1 -1.7300 2.6822 9.7765 35 1 0.8644 0.2219 5.3421 36 1 1.4312 -0.5980 -2.1448 37 1 2.8400 -2.4376 -0.0310 38 1 2.5947 -2.8284 -1.8165 39 1 3.9427 -0.7752 -2.4518 40 1 4.1884 -0.3841 -0.6662 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764385212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:30 Heat of formation + Delta-G solvation = -87.893867 kcal Electronic energy + Delta-G solvation = -22288.733539 eV Core-core repulsion = 18841.359030 eV Total energy + Delta-G solvation = -3447.374508 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77251 -40.73190 -39.00223 -38.15393 -36.70764 -34.37095 -33.67974 -32.31570 -30.93550 -28.82204 -27.29810 -25.28184 -23.61213 -23.27372 -23.07478 -21.95217 -20.96092 -19.52468 -18.83205 -18.74002 -17.60051 -17.15022 -16.72403 -16.42867 -16.18873 -16.08156 -15.59583 -15.34609 -15.06626 -14.78730 -14.29854 -14.08323 -13.89436 -13.64272 -13.53957 -13.05608 -12.94250 -12.89166 -12.50633 -12.47399 -12.34274 -12.26270 -12.19702 -12.11557 -11.92648 -11.54602 -11.22789 -11.13450 -10.84484 -10.81559 -9.71743 -9.01947 -8.47997 -6.16782 0.41286 0.71743 1.21465 1.33897 1.43147 1.51852 1.71958 2.16987 2.81167 2.88609 3.15118 3.38459 3.57371 3.68958 3.86982 3.93936 3.99500 4.06958 4.19083 4.27641 4.30744 4.36598 4.48378 4.52126 4.58375 4.70806 4.74962 4.80098 4.84297 5.00175 5.02720 5.11045 5.13584 5.23356 5.25925 5.35659 5.49405 5.60519 5.68339 5.70998 6.01157 6.19188 6.78028 6.96458 7.77188 8.75507 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030159 B = 0.003070 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.189540 B = 9119.691435 C = 9663.646900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 H 0.069 0.931 4 O -0.346 6.346 5 C 0.464 3.536 6 O -0.535 6.535 7 C -0.063 4.063 8 C -0.036 4.036 9 C -0.177 4.177 10 C -0.072 4.072 11 C -0.242 4.242 12 C 0.112 3.888 13 O -0.234 6.234 14 C -0.415 4.415 15 H 0.101 0.899 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.020 2.980 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.252 1.252 22 C -0.190 4.190 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.179 4.179 26 H 0.037 0.963 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.154 0.846 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.273 0.727 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -8.665 -18.966 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.087 0.913 4 O -0.263 6.263 5 C 0.309 3.691 6 O -0.424 6.424 7 C -0.099 4.099 8 C -0.037 4.037 9 C -0.195 4.195 10 C -0.090 4.090 11 C -0.261 4.261 12 C 0.062 3.938 13 O -0.141 6.141 14 C -0.491 4.491 15 H 0.119 0.881 16 C -0.221 4.221 17 N -0.560 5.560 18 Si 0.839 3.161 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.175 1.175 22 C -0.209 4.209 23 C -0.181 4.181 24 C -0.198 4.198 25 C -0.216 4.216 26 H 0.056 0.944 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.171 0.829 30 H 0.149 0.851 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.711 -8.406 -18.912 22.861 hybrid contribution -0.559 0.972 0.892 1.433 sum 9.152 -7.434 -18.020 21.535 Atomic orbital electron populations 1.22149 0.93427 1.03607 1.02921 1.22279 0.94864 0.95966 0.81596 0.91302 1.86534 1.77013 1.42305 1.20490 1.24030 0.73697 0.85644 0.85767 1.90710 1.48679 1.18562 1.84441 1.20387 1.06823 0.96849 0.85891 1.19124 0.93061 0.96954 0.94537 1.21000 0.97977 0.99418 1.01122 1.21147 0.97753 0.96522 0.93601 1.21338 0.94522 1.05009 1.05261 1.19849 0.88225 0.94156 0.91552 1.83937 1.33098 1.58928 1.38107 1.21833 1.02579 1.21001 1.03661 0.88134 1.26614 0.94230 1.00244 1.00998 1.70186 1.05389 1.43277 1.37152 0.84577 0.79412 0.76688 0.75448 1.18933 1.19409 1.17524 1.20229 1.00164 1.01364 0.99164 1.22475 0.96338 1.02229 0.97092 1.22987 1.02393 0.90775 1.03622 1.23047 0.92578 1.02650 1.03303 0.94371 0.88726 0.90394 0.82863 0.85138 0.83257 0.83433 0.86265 0.91822 0.87391 0.84145 0.88440 0.87037 0.86879 0.90008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.53 71.98 0.69 -2.60 16 2 C 0.11 2.30 2.92 30.60 0.09 2.39 16 3 H 0.07 1.75 7.16 -2.39 -0.02 1.73 16 4 O -0.35 -8.19 8.23 -51.40 -0.42 -8.61 16 5 C 0.46 13.28 7.92 71.24 0.56 13.85 16 6 O -0.54 -20.10 15.25 21.95 0.33 -19.76 16 7 C -0.06 -1.53 5.94 29.10 0.17 -1.35 16 8 C -0.04 -1.26 4.37 -19.88 -0.09 -1.35 16 9 C -0.18 -5.67 9.70 22.30 0.22 -5.46 16 10 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 11 C -0.24 -11.00 9.17 22.39 0.21 -10.79 16 12 C 0.11 5.86 6.65 22.58 0.15 6.01 16 13 O -0.23 -14.61 9.76 -22.74 -0.22 -14.83 16 14 C -0.41 -24.88 9.49 67.92 0.64 -24.23 16 15 H 0.10 5.54 5.21 -2.91 -0.02 5.52 16 16 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 17 N -0.92 -57.82 13.67 21.61 0.30 -57.52 16 18 Si 1.02 43.76 29.55 68.60 2.03 45.79 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 21 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 22 C -0.19 -8.50 9.65 22.39 0.22 -8.28 16 23 C -0.16 -2.47 5.71 -10.80 -0.06 -2.53 16 24 C -0.16 -2.19 9.88 30.61 0.30 -1.89 16 25 C -0.18 -2.52 10.20 30.61 0.31 -2.21 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.15 2.43 8.09 -2.39 -0.02 2.42 16 30 H 0.13 2.74 8.08 -2.39 -0.02 2.72 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 33 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.14 1.55 8.11 -2.38 -0.02 1.53 16 37 H 0.10 1.53 7.04 -2.39 -0.02 1.51 16 38 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -78.11 345.09 7.15 -70.95 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 1.04 Total: 25.69 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 4.10 Total: -41.71 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.30 Total: -57.52 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.31 Total: -43.20 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -78.11 7.15 -70.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764385212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.939 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds