Wall clock time and date at job start Tue Mar 31 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20767 * 119.99617 * 2 1 4 4 C 1.50693 * 120.00121 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47119 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47226 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47129 * 180.02562 * 6 5 4 8 8 O 1.20823 * 120.00135 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00138 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00359 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46867 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47105 * 299.99661 * 1 2 3 27 27 H 1.08997 * 109.46915 * 59.99917 * 1 2 3 28 28 H 1.09000 * 109.47152 * 60.00363 * 4 2 1 29 29 H 1.09001 * 109.47099 * 299.99831 * 4 2 1 30 30 H 1.08997 * 109.47490 * 59.99804 * 5 4 2 31 31 H 1.09001 * 109.46978 * 299.99882 * 5 4 2 32 32 H 1.09005 * 109.46867 * 59.99907 * 6 5 4 33 33 H 1.08993 * 109.47302 * 300.00101 * 6 5 4 34 34 H 1.08996 * 109.46887 * 299.99947 * 10 9 7 35 35 H 1.08998 * 109.46721 * 59.99644 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 6 4.5299 -2.3504 0.0002 7 6 6.0114 -2.0750 0.0016 8 8 6.4142 -0.9359 0.0030 9 8 6.8837 -3.0952 0.0014 10 6 8.2955 -2.7555 0.0022 11 6 9.1162 -4.0194 0.0024 12 6 9.4951 -4.5933 1.2062 13 6 10.2398 -5.7506 1.2185 14 6 10.6269 -6.3445 0.0029 15 6 11.3978 -7.5298 0.0032 16 1 12.0167 -7.7717 -0.8482 17 6 11.3589 -8.3896 1.1067 18 7 10.3795 -8.3025 1.9696 19 14 12.7055 -9.6617 1.3476 20 1 13.8023 -9.0740 2.1580 21 1 12.1488 -10.8446 2.0518 22 1 13.2359 -10.0777 0.0244 23 6 10.2415 -5.7499 -1.2128 24 6 9.4920 -4.5959 -1.2010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9973 -1.8762 -0.8909 29 1 1.9973 -1.8770 0.8892 30 1 4.0278 -0.4544 0.8906 31 1 4.0284 -0.4533 -0.8893 32 1 4.2669 -2.9218 -0.8900 33 1 4.2662 -2.9222 0.8899 34 1 8.5289 -2.1704 -0.8873 35 1 8.5280 -2.1714 0.8926 36 1 9.2013 -4.1328 2.1379 37 1 10.5300 -6.1986 2.1573 38 1 10.3527 -8.8982 2.7347 39 1 10.5335 -6.1972 -2.1515 40 1 9.1947 -4.1379 -2.1329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772367650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:02 Heat of formation + Delta-G solvation = -130.431112 kcal Electronic energy + Delta-G solvation = -21294.579084 eV Core-core repulsion = 17845.360022 eV Total energy + Delta-G solvation = -3449.219062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19551 -39.65489 -37.70911 -36.17377 -34.50812 -33.86862 -31.20478 -30.75348 -29.37939 -28.56242 -27.01927 -24.06915 -22.82482 -21.09315 -20.34129 -20.04001 -19.87008 -17.41032 -17.32277 -16.59093 -16.44784 -15.82594 -15.66732 -15.35286 -15.08387 -14.50651 -14.21708 -13.79775 -13.65355 -12.95233 -12.81201 -12.76313 -12.35058 -12.34424 -12.24550 -12.03250 -11.96633 -11.72154 -11.61854 -11.20135 -11.01289 -10.99996 -10.82924 -10.45685 -10.25572 -10.11967 -9.90576 -9.68425 -9.47009 -9.23411 -7.56992 -7.45735 -6.87207 -4.47099 1.66738 2.45497 2.49220 2.95355 2.99894 3.03036 3.05200 3.35779 3.78378 3.85175 4.47005 4.56433 4.69399 4.75823 4.83072 4.98777 5.09316 5.19507 5.32137 5.34319 5.45191 5.61399 5.63245 5.68215 5.73851 5.87156 6.09860 6.10945 6.25085 6.30992 6.85936 6.92173 6.97100 7.17922 7.21897 7.26106 7.51157 7.73599 7.95267 8.00652 8.11727 8.18689 8.53410 8.78024 8.86235 10.06596 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.002283 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.922195 B =12259.309720 C =12621.289211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.352 3.648 3 O -0.456 6.456 4 C -0.173 4.173 5 C -0.102 4.102 6 C -0.116 4.116 7 C 0.453 3.547 8 O -0.520 6.520 9 O -0.351 6.351 10 C 0.136 3.864 11 C -0.235 4.235 12 C -0.076 4.076 13 C -0.171 4.171 14 C 0.117 3.883 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.064 4.064 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 7.125 -1.337 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.227 3.773 3 O -0.329 6.329 4 C -0.211 4.211 5 C -0.140 4.140 6 C -0.154 4.154 7 C 0.296 3.704 8 O -0.410 6.410 9 O -0.268 6.268 10 C 0.064 3.936 11 C -0.237 4.237 12 C -0.095 4.095 13 C -0.190 4.190 14 C 0.115 3.885 15 C -0.485 4.485 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.083 4.083 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.154 7.879 -1.123 17.117 hybrid contribution 0.486 -0.721 0.188 0.889 sum -14.668 7.159 -0.935 16.349 Atomic orbital electron populations 1.22276 0.94545 1.04631 1.04727 1.24655 0.91906 0.90389 0.70339 1.90455 1.71905 1.35246 1.35328 1.22193 0.96210 0.97644 1.05028 1.21234 0.91939 0.95824 1.04972 1.21394 0.88156 1.00013 1.05843 1.23641 0.90376 0.83771 0.72606 1.90640 1.80841 1.23465 1.46033 1.86716 1.19623 1.37907 1.82544 1.21716 0.74851 0.96211 1.00861 1.18691 1.09721 1.01115 0.94127 1.20545 0.98056 0.95772 0.95087 1.21301 1.03563 0.95278 0.98834 1.17693 0.88549 0.91328 0.90949 1.19683 1.23015 1.03825 1.01976 0.90150 1.25976 0.95434 0.98254 0.94773 1.69828 1.26673 1.33798 1.10692 0.86264 0.81199 0.79392 0.79631 1.19156 1.20218 1.18513 1.20963 1.07339 0.99519 0.97125 1.20393 0.97382 0.95301 0.95204 0.89945 0.89119 0.89129 0.87988 0.87980 0.90474 0.90482 0.87770 0.87740 0.92148 0.92091 0.89330 0.86216 0.90639 0.88704 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.93 10.33 36.01 0.37 -0.56 16 2 C 0.35 2.83 7.27 -29.04 -0.21 2.62 16 3 O -0.46 -5.83 16.72 5.99 0.10 -5.73 16 4 C -0.17 -1.12 5.55 -27.89 -0.15 -1.28 16 5 C -0.10 -1.06 3.80 -26.73 -0.10 -1.16 16 6 C -0.12 -1.23 5.81 -27.88 -0.16 -1.40 16 7 C 0.45 7.25 7.96 36.00 0.29 7.54 16 8 O -0.52 -9.70 15.73 -18.75 -0.29 -10.00 16 9 O -0.35 -6.53 10.20 -39.25 -0.40 -6.93 16 10 C 0.14 2.64 5.58 36.01 0.20 2.84 16 11 C -0.24 -5.24 5.54 -104.33 -0.58 -5.82 16 12 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 13 C -0.17 -4.38 8.70 -38.87 -0.34 -4.72 16 14 C 0.12 3.09 5.58 -106.82 -0.60 2.49 16 15 C -0.46 -11.81 9.05 -37.74 -0.34 -12.15 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 18 N -0.79 -19.77 10.95 55.55 0.61 -19.17 16 19 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.23 -5.58 9.80 -38.88 -0.38 -5.97 16 24 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 25 H 0.08 0.19 8.00 -51.93 -0.42 -0.22 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 31 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 37 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 38 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 39 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 40 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -31.24 349.60 -8.38 -39.62 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -5.77 Total: 3.68 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.86 Total: -19.82 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.61 Total: -19.17 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.60 Total: -22.65 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.24 -8.38 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772367650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.811 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds