Wall clock time and date at job start Tue Mar 31 2020 06:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20767 * 119.99617 * 2 1 4 4 C 1.50693 * 120.00121 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47119 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47226 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47129 * 180.02562 * 6 5 4 8 8 O 1.20823 * 120.00135 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00138 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00359 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.09005 * 109.46867 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47105 * 299.99661 * 1 2 3 27 27 H 1.08997 * 109.46915 * 59.99917 * 1 2 3 28 28 H 1.09000 * 109.47152 * 60.00363 * 4 2 1 29 29 H 1.09001 * 109.47099 * 299.99831 * 4 2 1 30 30 H 1.08997 * 109.47490 * 59.99804 * 5 4 2 31 31 H 1.09001 * 109.46978 * 299.99882 * 5 4 2 32 32 H 1.09005 * 109.46867 * 59.99907 * 6 5 4 33 33 H 1.08993 * 109.47302 * 300.00101 * 6 5 4 34 34 H 1.08996 * 109.46887 * 299.99947 * 10 9 7 35 35 H 1.08998 * 109.46721 * 59.99644 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 6 3.7648 -1.0254 0.0002 6 6 4.5299 -2.3504 0.0002 7 6 6.0114 -2.0750 0.0016 8 8 6.4142 -0.9359 0.0030 9 8 6.8837 -3.0952 0.0014 10 6 8.2955 -2.7555 0.0022 11 6 9.1162 -4.0194 0.0024 12 6 9.4951 -4.5933 1.2062 13 6 10.2398 -5.7506 1.2185 14 6 10.6269 -6.3445 0.0029 15 6 11.3978 -7.5298 0.0032 16 1 12.0167 -7.7717 -0.8482 17 6 11.3589 -8.3896 1.1067 18 7 10.3795 -8.3025 1.9696 19 14 12.7055 -9.6617 1.3476 20 1 13.8023 -9.0740 2.1580 21 1 12.1488 -10.8446 2.0518 22 1 13.2359 -10.0777 0.0244 23 6 10.2415 -5.7499 -1.2128 24 6 9.4920 -4.5959 -1.2010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9973 -1.8762 -0.8909 29 1 1.9973 -1.8770 0.8892 30 1 4.0278 -0.4544 0.8906 31 1 4.0284 -0.4533 -0.8893 32 1 4.2669 -2.9218 -0.8900 33 1 4.2662 -2.9222 0.8899 34 1 8.5289 -2.1704 -0.8873 35 1 8.5280 -2.1714 0.8926 36 1 9.2013 -4.1328 2.1379 37 1 10.5300 -6.1986 2.1573 38 1 10.3527 -8.8982 2.7347 39 1 10.5335 -6.1972 -2.1515 40 1 9.1947 -4.1379 -2.1329 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772367650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:02 Heat of formation + Delta-G solvation = -146.449103 kcal Electronic energy + Delta-G solvation = -21295.273676 eV Core-core repulsion = 17845.360022 eV Total energy + Delta-G solvation = -3449.913654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49823 -40.42135 -39.50195 -37.61292 -35.68726 -35.37852 -32.64663 -31.68013 -31.24187 -29.53383 -28.50272 -25.68307 -23.87430 -22.96272 -21.87639 -21.44359 -20.50167 -19.27783 -18.60683 -17.74702 -17.67655 -17.14684 -16.67559 -16.47721 -15.99391 -15.74250 -15.65001 -15.42103 -15.02740 -14.39734 -13.95313 -13.89770 -13.84077 -13.58332 -13.37565 -13.12241 -12.87204 -12.80604 -12.74926 -12.70865 -12.57127 -12.42472 -12.10212 -11.80344 -11.70509 -11.61004 -11.42116 -11.28970 -11.05234 -10.55592 -9.45167 -9.34442 -8.69181 -6.40290 0.73338 1.07757 1.09756 1.22873 1.38690 1.45295 1.52483 1.97165 2.19563 2.71529 3.21065 3.61740 3.76937 4.00400 4.04475 4.08049 4.09450 4.11622 4.41852 4.46895 4.52716 4.54439 4.56261 4.66193 4.72045 4.80976 4.88525 4.99559 5.11402 5.11872 5.25300 5.29279 5.30524 5.38520 5.57502 5.64134 5.87598 6.04779 6.13415 6.30847 6.63425 6.65431 6.79099 6.87777 6.96195 8.27552 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.002283 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.922195 B =12259.309720 C =12621.289211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.350 3.650 3 O -0.517 6.517 4 C -0.168 4.168 5 C -0.100 4.100 6 C -0.106 4.106 7 C 0.448 3.552 8 O -0.552 6.552 9 O -0.362 6.362 10 C 0.140 3.860 11 C -0.230 4.230 12 C -0.081 4.081 13 C -0.194 4.194 14 C 0.086 3.914 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.034 3.966 18 N -0.817 5.817 19 Si 0.986 3.014 20 H -0.263 1.263 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.066 4.066 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.361 6.165 -1.602 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.230 3.770 3 O -0.395 6.395 4 C -0.204 4.204 5 C -0.137 4.137 6 C -0.143 4.143 7 C 0.294 3.706 8 O -0.443 6.443 9 O -0.279 6.279 10 C 0.067 3.933 11 C -0.232 4.232 12 C -0.099 4.099 13 C -0.213 4.213 14 C 0.084 3.916 15 C -0.520 4.520 16 H 0.098 0.902 17 C -0.182 4.182 18 N -0.442 5.442 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.191 1.191 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.084 4.084 25 H 0.132 0.868 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.000 6.914 -1.395 18.405 hybrid contribution 0.930 -0.295 0.247 1.006 sum -16.070 6.619 -1.148 17.418 Atomic orbital electron populations 1.22293 0.91606 1.06787 1.04957 1.25364 0.93684 0.90029 0.67901 1.90452 1.73297 1.37274 1.38466 1.22260 0.92762 0.97464 1.07937 1.21167 0.94960 0.95114 1.02509 1.21572 0.83640 1.00623 1.08448 1.24753 0.91980 0.82773 0.71097 1.90634 1.81546 1.24652 1.47488 1.86685 1.19121 1.39047 1.83044 1.21521 0.75580 0.94595 1.01572 1.18988 1.09141 1.01438 0.93604 1.20773 0.97452 0.95208 0.96514 1.21277 1.05235 0.96529 0.98265 1.18058 0.89491 0.92194 0.91866 1.19929 1.24203 1.04705 1.03210 0.90187 1.26834 0.97370 1.00059 0.93916 1.69871 1.28123 1.34950 1.11285 0.85147 0.77876 0.76739 0.79637 1.18722 1.19094 1.18077 1.21177 1.07839 1.00401 0.96956 1.20707 0.96433 0.94687 0.96588 0.86848 0.88833 0.88790 0.84805 0.84923 0.93159 0.93016 0.84797 0.85015 0.91208 0.91747 0.87653 0.87689 0.89829 0.87820 0.86456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.27 10.33 71.24 0.74 -0.53 16 2 C 0.35 5.08 7.27 29.10 0.21 5.29 16 3 O -0.52 -13.48 16.72 -1.47 -0.02 -13.50 16 4 C -0.17 -1.62 5.55 29.85 0.17 -1.45 16 5 C -0.10 -1.92 3.80 30.60 0.12 -1.81 16 6 C -0.11 -1.94 5.81 29.85 0.17 -1.77 16 7 C 0.45 13.72 7.96 71.23 0.57 14.29 16 8 O -0.55 -20.47 15.73 21.97 0.35 -20.12 16 9 O -0.36 -12.85 10.20 -51.39 -0.52 -13.37 16 10 C 0.14 5.27 5.58 71.24 0.40 5.67 16 11 C -0.23 -10.10 5.54 -19.68 -0.11 -10.21 16 12 C -0.08 -3.81 9.67 22.22 0.21 -3.60 16 13 C -0.19 -10.21 8.70 22.73 0.20 -10.01 16 14 C 0.09 4.65 5.58 -21.29 -0.12 4.54 16 15 C -0.49 -26.10 9.05 23.46 0.21 -25.88 16 16 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 17 C 0.03 1.69 5.14 85.26 0.44 2.13 16 18 N -0.82 -41.88 10.95 21.83 0.24 -41.64 16 19 Si 0.99 37.15 29.59 68.60 2.03 39.18 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 23 C -0.24 -11.95 9.80 22.73 0.22 -11.73 16 24 C -0.07 -2.91 9.67 22.22 0.21 -2.70 16 25 H 0.11 0.03 8.00 -2.38 -0.02 0.01 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 31 H 0.05 1.25 8.06 -2.39 -0.02 1.23 16 32 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 35 H 0.06 2.37 8.07 -2.39 -0.02 2.35 16 36 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.11 5.74 6.16 -2.91 -0.02 5.72 16 38 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 Total: -1.00 -71.54 349.60 6.73 -64.81 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.03 Total: 22.44 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 3.64 Total: -37.78 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.24 Total: -41.64 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -0.20 Total: -47.00 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -71.54 6.73 -64.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772367650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.644 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds