Wall clock time and date at job start Tue Mar 31 2020 05:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99440 * 2 1 4 4 C 1.52998 * 109.47148 * 95.00451 * 3 2 1 5 5 C 1.50695 * 120.00547 * 179.97438 * 2 1 3 6 6 O 1.45203 * 109.46918 * 359.97438 * 5 2 1 7 7 C 1.34225 * 117.00065 * 179.97438 * 6 5 2 8 8 O 1.20830 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.07998 * 120.00206 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99869 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46743 * 214.99546 * 3 2 1 28 28 H 1.08997 * 109.47273 * 334.99713 * 3 2 1 29 29 H 1.08997 * 109.47637 * 59.99484 * 4 3 2 30 30 H 1.09004 * 109.47135 * 179.97438 * 4 3 2 31 31 H 1.09007 * 109.46876 * 299.99123 * 4 3 2 32 32 H 1.09005 * 109.47236 * 240.00418 * 5 2 1 33 33 H 1.08992 * 109.47428 * 119.99822 * 5 2 1 34 34 H 1.08998 * 109.46621 * 60.00590 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00254 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4273 1.6840 1.4370 5 6 2.0636 -1.3050 0.0006 6 8 1.1201 -2.4087 0.0017 7 6 1.6331 -3.6490 0.0018 8 8 2.8310 -3.8073 0.0014 9 6 0.7152 -4.8442 0.0023 10 6 1.5360 -6.1080 0.0030 11 6 1.9119 -6.6862 1.2018 12 6 2.6637 -7.8446 1.2058 13 6 3.0428 -8.4287 0.0041 14 8 3.7813 -9.5677 0.0048 15 6 4.0165 -10.1441 1.2007 16 1 3.6936 -9.6559 2.1083 17 6 4.6732 -11.3636 1.2654 18 7 5.0663 -11.9585 0.1598 19 14 4.9985 -12.1625 2.9223 20 1 3.8557 -13.0401 3.2816 21 1 6.2402 -12.9732 2.8457 22 1 5.1580 -11.1092 3.9570 23 6 2.6692 -7.8423 -1.1981 24 6 1.9126 -6.6870 -1.1953 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 2.9741 1.1990 -0.5894 28 1 1.4384 2.0855 -0.4343 29 1 3.0522 0.9037 1.8713 30 1 2.9726 2.6278 1.4369 31 1 1.5165 1.7903 2.0265 32 1 2.6902 -1.3623 0.8907 33 1 2.6902 -1.3631 -0.8893 34 1 0.0862 -4.8196 -0.8875 35 1 0.0866 -4.8192 0.8924 36 1 1.6164 -6.2317 2.1359 37 1 2.9564 -8.2958 2.1423 38 1 5.5260 -12.8114 0.2051 39 1 2.9663 -8.2917 -2.1341 40 1 1.6179 -6.2329 -2.1298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773519106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:45 Heat of formation + Delta-G solvation = -81.537726 kcal Electronic energy + Delta-G solvation = -21658.845654 eV Core-core repulsion = 18211.746769 eV Total energy + Delta-G solvation = -3447.098885 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47486 -38.99863 -37.46418 -36.50846 -35.59470 -32.52570 -31.57738 -30.77480 -30.17718 -27.65275 -26.37760 -25.13724 -23.89617 -22.00336 -21.63246 -20.13651 -18.83146 -18.00257 -17.55895 -17.02533 -16.53787 -16.37183 -15.06794 -14.88823 -14.65549 -14.50021 -14.32632 -13.91747 -13.61979 -13.55370 -13.44340 -12.99027 -12.73112 -12.59450 -12.38153 -12.04100 -11.90592 -11.55800 -11.29927 -11.25690 -11.17546 -10.90556 -10.88773 -10.79397 -10.64022 -10.43449 -10.27331 -9.34535 -9.33840 -8.83691 -8.17643 -7.20719 -6.45745 -4.04265 1.91236 2.10523 2.23344 2.37706 2.81187 3.13418 3.13840 3.18583 3.96443 4.38771 4.48571 4.62520 4.85931 4.93659 4.95475 5.09685 5.12608 5.16722 5.23117 5.26419 5.29498 5.35851 5.54202 5.56835 5.62910 5.69338 5.70960 5.82598 5.85550 6.19869 6.29551 6.37990 6.40321 6.61398 6.69217 6.89392 7.03899 7.21473 7.33584 7.43201 7.80734 7.91652 7.99393 8.99767 9.69562 10.72168 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031787 B = 0.002569 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.665151 B =10897.397620 C =11272.773342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.149 4.149 5 C 0.103 3.897 6 O -0.362 6.362 7 C 0.455 3.545 8 O -0.491 6.491 9 C -0.049 4.049 10 C -0.184 4.184 11 C -0.053 4.053 12 C -0.233 4.233 13 C 0.159 3.841 14 O -0.176 6.176 15 C -0.392 4.392 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.862 5.862 19 Si 0.942 3.058 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.192 4.192 24 C -0.056 4.056 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 21.710 0.911 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.122 4.122 4 C -0.207 4.207 5 C 0.029 3.971 6 O -0.280 6.280 7 C 0.297 3.703 8 O -0.376 6.376 9 C -0.087 4.087 10 C -0.185 4.185 11 C -0.071 4.071 12 C -0.252 4.252 13 C 0.105 3.895 14 O -0.079 6.079 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.496 5.496 19 Si 0.766 3.234 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.211 4.211 24 C -0.075 4.075 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.736 21.328 0.668 23.057 hybrid contribution 0.373 -0.311 0.881 1.006 sum -8.363 21.017 1.549 22.672 Atomic orbital electron populations 1.23773 0.95245 1.02444 0.99107 1.21574 0.95913 0.93698 1.02838 1.20528 1.00161 0.93472 0.97992 1.21769 1.01708 1.01392 0.95810 1.21664 0.90289 0.82318 1.02811 1.86457 1.41302 1.15485 1.84789 1.24237 0.89598 0.83771 0.72686 1.90710 1.16948 1.86174 1.43763 1.20091 0.96050 0.87226 1.05304 1.18636 1.08274 0.97611 0.93984 1.20531 0.95897 0.94565 0.96132 1.21109 1.06407 0.99258 0.98474 1.19410 0.89235 0.87557 0.93293 1.83976 1.58899 1.31961 1.33033 1.21345 1.38908 1.03444 0.83106 0.89009 1.25306 0.96331 0.95574 0.99333 1.70038 1.36186 1.16366 1.27039 0.85700 0.78289 0.79257 0.80116 1.19844 1.20242 1.19183 1.20159 1.05678 0.99005 0.96284 1.20424 0.96310 0.94434 0.96289 0.88370 0.87053 0.91080 0.90736 0.92462 0.92315 0.92463 0.90382 0.90352 0.87765 0.87818 0.87644 0.85451 0.91985 0.86396 0.87191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 13.66 29.02 0.40 -1.02 16 2 C -0.14 -1.24 5.31 -101.07 -0.54 -1.78 16 3 C -0.08 -0.58 6.10 -27.88 -0.17 -0.75 16 4 C -0.15 -0.97 9.89 37.16 0.37 -0.61 16 5 C 0.10 1.13 5.88 36.00 0.21 1.34 16 6 O -0.36 -4.48 8.61 -39.24 -0.34 -4.82 16 7 C 0.45 6.59 7.95 36.01 0.29 6.88 16 8 O -0.49 -9.01 15.78 -18.75 -0.30 -9.30 16 9 C -0.05 -0.63 5.94 -29.04 -0.17 -0.80 16 10 C -0.18 -3.18 4.38 -104.58 -0.46 -3.64 16 11 C -0.05 -0.99 9.69 -39.61 -0.38 -1.38 16 12 C -0.23 -5.18 9.17 -39.39 -0.36 -5.54 16 13 C 0.16 3.93 6.65 -39.11 -0.26 3.67 16 14 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 15 C -0.39 -11.05 9.49 30.89 0.29 -10.76 16 16 H 0.09 2.40 5.20 -52.49 -0.27 2.12 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.41 13.67 55.48 0.76 -24.65 16 19 Si 0.94 20.63 29.55 -169.99 -5.02 15.61 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 24 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 25 H 0.10 0.65 7.99 -52.49 -0.42 0.23 16 26 H 0.11 1.01 6.82 -52.48 -0.36 0.65 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.44 7.99 -51.93 -0.41 0.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 34 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 38 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -32.59 349.11 -6.84 -39.43 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.54 Total: 2.93 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -1.66 Total: -19.38 kcal Atomic # 7 Polarization: -25.41 SS G_CDS: 0.76 Total: -24.65 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.63 Total: -19.20 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.59 -6.84 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773519106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.108 kcal (2) G-P(sol) polarization free energy of solvation -32.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds