Wall clock time and date at job start Tue Mar 31 2020 05:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 119.99440 * 2 1 4 4 C 1.52998 * 109.47148 * 95.00451 * 3 2 1 5 5 C 1.50695 * 120.00547 * 179.97438 * 2 1 3 6 6 O 1.45203 * 109.46918 * 359.97438 * 5 2 1 7 7 C 1.34225 * 117.00065 * 179.97438 * 6 5 2 8 8 O 1.20830 * 120.00117 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00089 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.46992 * 180.02562 * 9 7 6 11 11 C 1.38299 * 119.93247 * 90.00201 * 10 9 7 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.07998 * 120.00206 * 0.02562 * 1 2 3 26 26 H 1.08004 * 119.99869 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46743 * 214.99546 * 3 2 1 28 28 H 1.08997 * 109.47273 * 334.99713 * 3 2 1 29 29 H 1.08997 * 109.47637 * 59.99484 * 4 3 2 30 30 H 1.09004 * 109.47135 * 179.97438 * 4 3 2 31 31 H 1.09007 * 109.46876 * 299.99123 * 4 3 2 32 32 H 1.09005 * 109.47236 * 240.00418 * 5 2 1 33 33 H 1.08992 * 109.47428 * 119.99822 * 5 2 1 34 34 H 1.08998 * 109.46621 * 60.00590 * 9 7 6 35 35 H 1.08996 * 109.47266 * 300.00254 * 9 7 6 36 36 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 37 37 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 38 38 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 40 40 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.4273 1.6840 1.4370 5 6 2.0636 -1.3050 0.0006 6 8 1.1201 -2.4087 0.0017 7 6 1.6331 -3.6490 0.0018 8 8 2.8310 -3.8073 0.0014 9 6 0.7152 -4.8442 0.0023 10 6 1.5360 -6.1080 0.0030 11 6 1.9119 -6.6862 1.2018 12 6 2.6637 -7.8446 1.2058 13 6 3.0428 -8.4287 0.0041 14 8 3.7813 -9.5677 0.0048 15 6 4.0165 -10.1441 1.2007 16 1 3.6936 -9.6559 2.1083 17 6 4.6732 -11.3636 1.2654 18 7 5.0663 -11.9585 0.1598 19 14 4.9985 -12.1625 2.9223 20 1 3.8557 -13.0401 3.2816 21 1 6.2402 -12.9732 2.8457 22 1 5.1580 -11.1092 3.9570 23 6 2.6692 -7.8423 -1.1981 24 6 1.9126 -6.6870 -1.1953 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5400 -0.9354 0.0004 27 1 2.9741 1.1990 -0.5894 28 1 1.4384 2.0855 -0.4343 29 1 3.0522 0.9037 1.8713 30 1 2.9726 2.6278 1.4369 31 1 1.5165 1.7903 2.0265 32 1 2.6902 -1.3623 0.8907 33 1 2.6902 -1.3631 -0.8893 34 1 0.0862 -4.8196 -0.8875 35 1 0.0866 -4.8192 0.8924 36 1 1.6164 -6.2317 2.1359 37 1 2.9564 -8.2958 2.1423 38 1 5.5260 -12.8114 0.2051 39 1 2.9663 -8.2917 -2.1341 40 1 1.6179 -6.2329 -2.1298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773519106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:44 Heat of formation + Delta-G solvation = -99.660296 kcal Electronic energy + Delta-G solvation = -21659.631508 eV Core-core repulsion = 18211.746769 eV Total energy + Delta-G solvation = -3447.884739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.63087 -40.69822 -38.69155 -37.91474 -36.49298 -34.42800 -33.05344 -31.81450 -31.43060 -28.86110 -27.70074 -26.89208 -24.49775 -23.67057 -22.98305 -21.50539 -19.87200 -19.55776 -18.86762 -18.64885 -17.63074 -17.35435 -16.43314 -16.35001 -15.98202 -15.85039 -15.50338 -15.31401 -15.01332 -14.89556 -14.43192 -14.28862 -14.12843 -13.77621 -13.59565 -13.10092 -12.96784 -12.88113 -12.74709 -12.51578 -12.34901 -12.31224 -12.12509 -11.96507 -11.80054 -11.74458 -11.47674 -11.20344 -10.80174 -10.00559 -9.79522 -8.96566 -8.48554 -6.16890 0.56639 0.58999 1.24138 1.27024 1.34164 1.42872 1.51924 1.72542 2.16986 2.81961 3.15043 3.49032 3.67321 3.77676 3.91788 4.01485 4.14409 4.17502 4.21978 4.30902 4.38856 4.42635 4.53428 4.56259 4.67368 4.77258 4.77835 4.99413 5.02628 5.06336 5.10568 5.12998 5.26592 5.35647 5.43276 5.53454 5.66726 5.69238 5.71919 5.90865 6.01303 6.19362 6.80664 6.95863 7.76176 8.74693 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031787 B = 0.002569 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.665151 B =10897.397620 C =11272.773342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C -0.083 4.083 4 C -0.149 4.149 5 C 0.098 3.902 6 O -0.352 6.352 7 C 0.462 3.538 8 O -0.538 6.538 9 C -0.047 4.047 10 C -0.159 4.159 11 C -0.055 4.055 12 C -0.245 4.245 13 C 0.116 3.884 14 O -0.231 6.231 15 C -0.415 4.415 16 H 0.101 0.899 17 C -0.024 4.024 18 N -0.920 5.920 19 Si 1.020 2.980 20 H -0.261 1.261 21 H -0.271 1.271 22 H -0.254 1.254 23 C -0.207 4.207 24 C -0.053 4.053 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.273 0.727 39 H 0.114 0.886 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.811 24.738 1.916 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.120 4.120 4 C -0.207 4.207 5 C 0.025 3.975 6 O -0.269 6.269 7 C 0.307 3.693 8 O -0.427 6.427 9 C -0.084 4.084 10 C -0.160 4.160 11 C -0.073 4.073 12 C -0.264 4.264 13 C 0.065 3.935 14 O -0.138 6.138 15 C -0.491 4.491 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.186 1.186 21 H -0.196 1.196 22 H -0.178 1.178 23 C -0.226 4.226 24 C -0.071 4.071 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.229 24.428 1.668 26.937 hybrid contribution 0.911 -0.874 0.464 1.345 sum -10.318 23.554 2.132 25.803 Atomic orbital electron populations 1.23921 0.95028 1.03183 0.97991 1.21633 0.96212 0.93284 1.03830 1.20566 1.00305 0.92846 0.98273 1.21772 1.01724 1.01591 0.95564 1.21815 0.90483 0.82835 1.02410 1.86446 1.41247 1.15122 1.84108 1.24407 0.88932 0.84682 0.71327 1.90723 1.18935 1.86823 1.46175 1.20232 0.95391 0.83787 1.09005 1.19195 1.05655 0.98320 0.92846 1.20961 0.94620 0.93206 0.98545 1.21234 1.07254 1.00599 0.97314 1.19981 0.90603 0.87451 0.95418 1.83940 1.61950 1.34302 1.33603 1.21834 1.39456 1.04204 0.83603 0.88125 1.26626 0.95779 0.95849 1.03862 1.70185 1.38468 1.17292 1.29886 0.84568 0.78497 0.78296 0.74718 1.18561 1.19556 1.17779 1.20446 1.06491 1.00318 0.95354 1.20906 0.94592 0.92886 0.98688 0.86384 0.87621 0.91034 0.89213 0.93561 0.91171 0.92315 0.91019 0.90800 0.83974 0.84250 0.84108 0.86295 0.91789 0.86783 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 13.66 67.78 0.93 -1.31 16 2 C -0.15 -2.29 5.31 -16.48 -0.09 -2.37 16 3 C -0.08 -0.95 6.10 29.85 0.18 -0.76 16 4 C -0.15 -1.65 9.89 71.98 0.71 -0.93 16 5 C 0.10 1.97 5.88 71.23 0.42 2.39 16 6 O -0.35 -7.57 8.61 -51.37 -0.44 -8.01 16 7 C 0.46 11.76 7.95 71.24 0.57 12.33 16 8 O -0.54 -18.67 15.78 21.95 0.35 -18.32 16 9 C -0.05 -0.97 5.94 29.10 0.17 -0.79 16 10 C -0.16 -4.96 4.38 -19.84 -0.09 -5.05 16 11 C -0.06 -1.95 9.69 22.25 0.22 -1.74 16 12 C -0.24 -11.04 9.17 22.39 0.21 -10.83 16 13 C 0.12 5.98 6.65 22.58 0.15 6.13 16 14 O -0.23 -14.33 9.76 -22.72 -0.22 -14.55 16 15 C -0.41 -24.73 9.49 67.92 0.64 -24.08 16 16 H 0.10 5.51 5.20 -2.91 -0.02 5.50 16 17 C -0.02 -1.37 5.49 84.84 0.47 -0.91 16 18 N -0.92 -57.38 13.67 21.62 0.30 -57.08 16 19 Si 1.02 43.53 29.55 68.60 2.03 45.56 16 20 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.21 -9.13 9.99 22.39 0.22 -8.91 16 24 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 25 H 0.12 1.13 7.99 -2.91 -0.02 1.11 16 26 H 0.11 1.55 6.82 -2.91 -0.02 1.53 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.77 7.99 -2.39 -0.02 0.75 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 33 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 34 H 0.14 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.14 2.02 8.08 -2.39 -0.02 2.00 16 36 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 37 H 0.12 5.44 5.64 -2.91 -0.02 5.42 16 38 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -76.98 349.11 7.96 -69.02 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 1.03 Total: 21.82 kcal Atomic # 6 Polarization: -43.37 SS G_CDS: 4.93 Total: -38.44 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.30 Total: -57.08 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -0.32 Total: -40.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -76.98 7.96 -69.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773519106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.639 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds