Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00246 * 2 1 4 4 C 1.52998 * 109.47073 * 95.00330 * 3 2 1 5 5 C 1.50699 * 120.00147 * 180.02562 * 2 1 3 6 6 O 1.45208 * 109.46814 * 359.97438 * 5 2 1 7 7 C 1.34229 * 116.99784 * 180.02562 * 6 5 2 8 8 O 1.20830 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.08001 * 119.99819 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00337 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47437 * 215.00694 * 3 2 1 28 28 H 1.09001 * 109.47226 * 335.00200 * 3 2 1 29 29 H 1.09004 * 109.47402 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47085 * 299.99745 * 4 3 2 31 31 H 1.09002 * 109.47329 * 60.00389 * 4 3 2 32 32 H 1.09002 * 109.47212 * 239.99731 * 5 2 1 33 33 H 1.08998 * 109.47607 * 119.99630 * 5 2 1 34 34 H 1.09002 * 109.46571 * 59.99926 * 9 7 6 35 35 H 1.08992 * 109.46782 * 300.00190 * 9 7 6 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 39 39 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.4275 1.6838 1.4370 5 6 2.0635 -1.3051 -0.0006 6 8 1.1199 -2.4087 -0.0005 7 6 1.6329 -3.6491 -0.0004 8 8 2.8308 -3.8074 0.0000 9 6 0.7149 -4.8443 0.0003 10 6 1.5356 -6.1081 0.0009 11 6 1.9114 -6.6884 -1.1973 12 6 2.6640 -7.8484 -1.2009 13 6 3.0484 -8.4277 -0.0075 14 6 2.6680 -7.8508 1.1969 15 8 3.0392 -8.4211 2.3716 16 6 3.6721 -9.6096 2.3020 17 1 3.9348 -10.0260 1.3407 18 6 3.9858 -10.2971 3.4645 19 7 3.6654 -9.7901 4.6353 20 14 4.8620 -11.9440 3.3680 21 1 6.1717 -11.7689 2.6904 22 1 5.0802 -12.4698 4.7396 23 1 4.0302 -12.9029 2.5973 24 6 1.9114 -6.6859 1.1973 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.9742 1.1988 -0.5895 28 1 1.4386 2.0854 -0.4343 29 1 2.9721 2.6280 1.4371 30 1 1.5167 1.7901 2.0265 31 1 3.0524 0.9034 1.8713 32 1 2.6902 -1.3632 0.8894 33 1 2.6901 -1.3625 -0.8906 34 1 0.0857 -4.8195 -0.8894 35 1 0.0865 -4.8191 0.8905 36 1 1.6163 -6.2345 -2.1318 37 1 2.9555 -8.2993 -2.1380 38 1 3.6406 -9.3308 -0.0110 39 1 3.8844 -10.2713 5.4486 40 1 1.6171 -6.2328 2.1324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773545692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -80.748469 kcal Electronic energy + Delta-G solvation = -21793.088247 eV Core-core repulsion = 18346.023586 eV Total energy + Delta-G solvation = -3447.064661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.48184 -38.99217 -37.43059 -36.47406 -35.58579 -32.46536 -32.08196 -30.79974 -29.26970 -27.87048 -26.53988 -25.23734 -23.88405 -21.93700 -21.51408 -20.30212 -18.81123 -17.65146 -17.56393 -17.00622 -16.55520 -16.26079 -15.11513 -15.04598 -14.69080 -14.57292 -14.36653 -13.90088 -13.60648 -13.56014 -13.39397 -12.94082 -12.68035 -12.44855 -12.36798 -12.00917 -11.88694 -11.56987 -11.27562 -11.21462 -11.13784 -10.88272 -10.85579 -10.79793 -10.64209 -10.45810 -10.29504 -9.34352 -9.30289 -8.82377 -8.11552 -7.23040 -6.42796 -4.02051 1.94876 1.96283 2.35925 2.38489 2.80163 3.14604 3.15916 3.18338 3.98069 4.40945 4.50862 4.64518 4.85090 4.90933 4.98329 5.06257 5.11162 5.16321 5.22641 5.27640 5.35159 5.48713 5.58038 5.60522 5.63913 5.72357 5.74401 5.90753 5.91737 6.15854 6.32128 6.32947 6.39607 6.62903 6.66532 6.90070 7.06637 7.22864 7.35669 7.43462 7.80190 7.90526 8.01815 9.02652 9.72743 10.75291 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002824 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.101111 B = 9911.547680 C =10576.354302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.150 4.150 5 C 0.103 3.897 6 O -0.361 6.361 7 C 0.460 3.540 8 O -0.489 6.489 9 C -0.063 4.063 10 C -0.044 4.044 11 C -0.195 4.195 12 C -0.074 4.074 13 C -0.227 4.227 14 C 0.154 3.846 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.172 4.172 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.159 16.896 -9.704 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.140 4.140 3 C -0.121 4.121 4 C -0.207 4.207 5 C 0.030 3.970 6 O -0.279 6.279 7 C 0.302 3.698 8 O -0.374 6.374 9 C -0.101 4.101 10 C -0.045 4.045 11 C -0.214 4.214 12 C -0.093 4.093 13 C -0.247 4.247 14 C 0.100 3.900 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.191 4.191 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.761 16.879 -9.198 20.067 hybrid contribution 0.668 -0.807 -0.086 1.051 sum -5.093 16.072 -9.284 19.247 Atomic orbital electron populations 1.23774 0.95240 1.02461 0.99065 1.21568 0.95916 0.93673 1.02880 1.20523 1.00116 0.93437 0.98022 1.21774 1.01769 1.01405 0.95784 1.21684 0.90247 0.82209 1.02908 1.86441 1.41271 1.15371 1.84768 1.23855 0.89313 0.83767 0.72832 1.90726 1.16833 1.86172 1.43653 1.20261 0.96487 0.87321 1.06014 1.18665 0.98612 0.93810 0.93386 1.20373 1.05996 0.99018 0.96000 1.20687 0.96622 0.95067 0.96888 1.21204 1.07495 1.03881 0.92103 1.19262 0.91824 0.92243 0.86633 1.83977 1.65668 1.33830 1.24684 1.21275 1.36282 0.94606 0.94676 0.89135 1.25280 0.97545 0.99483 0.94182 1.70027 1.43969 1.38405 0.97459 0.85784 0.79492 0.80292 0.77875 1.19514 1.20287 1.19502 1.19968 1.04401 0.97588 0.97165 0.88353 0.87042 0.91108 0.90752 0.92327 0.92433 0.92392 0.90215 0.90329 0.87168 0.87031 0.87744 0.87319 0.85501 0.91990 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 13.66 29.02 0.40 -1.10 16 2 C -0.14 -1.31 5.31 -101.07 -0.54 -1.85 16 3 C -0.08 -0.61 6.10 -27.89 -0.17 -0.78 16 4 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 5 C 0.10 1.18 5.88 36.01 0.21 1.39 16 6 O -0.36 -4.66 8.61 -39.25 -0.34 -5.00 16 7 C 0.46 6.99 7.95 36.01 0.29 7.28 16 8 O -0.49 -9.31 15.78 -18.75 -0.30 -9.60 16 9 C -0.06 -0.86 5.94 -29.03 -0.17 -1.04 16 10 C -0.04 -0.81 4.37 -104.65 -0.46 -1.27 16 11 C -0.19 -3.47 9.70 -39.53 -0.38 -3.86 16 12 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 14 C 0.15 3.83 6.65 -39.11 -0.26 3.57 16 15 O -0.18 -5.18 9.76 0.05 0.00 -5.18 16 16 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 17 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 20 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.17 -3.74 9.65 -39.39 -0.38 -4.12 16 25 H 0.10 0.70 7.99 -52.49 -0.42 0.28 16 26 H 0.11 1.06 6.82 -52.49 -0.36 0.70 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.46 7.99 -51.93 -0.41 0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.08 0.89 8.13 -51.93 -0.42 0.46 16 34 H 0.11 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.11 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 LS Contribution 349.11 15.07 5.26 5.26 Total: -1.00 -32.97 349.11 -6.84 -39.81 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.54 Total: 3.42 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -1.66 Total: -19.56 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.76 Total: -24.86 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.63 Total: -19.78 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.97 -6.84 -39.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773545692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.940 kcal (2) G-P(sol) polarization free energy of solvation -32.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds