Wall clock time and date at job start Tue Mar 31 2020 05:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 120.00246 * 2 1 4 4 C 1.52998 * 109.47073 * 95.00330 * 3 2 1 5 5 C 1.50699 * 120.00147 * 180.02562 * 2 1 3 6 6 O 1.45208 * 109.46814 * 359.97438 * 5 2 1 7 7 C 1.34229 * 116.99784 * 180.02562 * 6 5 2 8 8 O 1.20830 * 119.99962 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47208 * 180.02562 * 9 7 6 11 11 C 1.38328 * 119.96230 * 269.97915 * 10 9 7 12 12 C 1.38281 * 120.13505 * 180.02562 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47063 * 60.00398 * 20 18 16 22 22 H 1.48498 * 109.47240 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47319 * 300.00306 * 20 18 16 24 24 C 1.38073 * 119.96534 * 89.99715 * 10 9 7 25 25 H 1.08001 * 119.99819 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00337 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47437 * 215.00694 * 3 2 1 28 28 H 1.09001 * 109.47226 * 335.00200 * 3 2 1 29 29 H 1.09004 * 109.47402 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.47085 * 299.99745 * 4 3 2 31 31 H 1.09002 * 109.47329 * 60.00389 * 4 3 2 32 32 H 1.09002 * 109.47212 * 239.99731 * 5 2 1 33 33 H 1.08998 * 109.47607 * 119.99630 * 5 2 1 34 34 H 1.09002 * 109.46571 * 59.99926 * 9 7 6 35 35 H 1.08992 * 109.46782 * 300.00190 * 9 7 6 36 36 H 1.08001 * 119.93314 * 0.02562 * 11 10 9 37 37 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 39 39 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 40 40 H 1.07996 * 120.03547 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.4275 1.6838 1.4370 5 6 2.0635 -1.3051 -0.0006 6 8 1.1199 -2.4087 -0.0005 7 6 1.6329 -3.6491 -0.0004 8 8 2.8308 -3.8074 0.0000 9 6 0.7149 -4.8443 0.0003 10 6 1.5356 -6.1081 0.0009 11 6 1.9114 -6.6884 -1.1973 12 6 2.6640 -7.8484 -1.2009 13 6 3.0484 -8.4277 -0.0075 14 6 2.6680 -7.8508 1.1969 15 8 3.0392 -8.4211 2.3716 16 6 3.6721 -9.6096 2.3020 17 1 3.9348 -10.0260 1.3407 18 6 3.9858 -10.2971 3.4645 19 7 3.6654 -9.7901 4.6353 20 14 4.8620 -11.9440 3.3680 21 1 6.1717 -11.7689 2.6904 22 1 5.0802 -12.4698 4.7396 23 1 4.0302 -12.9029 2.5973 24 6 1.9114 -6.6859 1.1973 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 0.0004 27 1 2.9742 1.1988 -0.5895 28 1 1.4386 2.0854 -0.4343 29 1 2.9721 2.6280 1.4371 30 1 1.5167 1.7901 2.0265 31 1 3.0524 0.9034 1.8713 32 1 2.6902 -1.3632 0.8894 33 1 2.6901 -1.3625 -0.8906 34 1 0.0857 -4.8195 -0.8894 35 1 0.0865 -4.8191 0.8905 36 1 1.6163 -6.2345 -2.1318 37 1 2.9555 -8.2993 -2.1380 38 1 3.6406 -9.3308 -0.0110 39 1 3.8844 -10.2713 5.4486 40 1 1.6171 -6.2328 2.1324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773545692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:47 Heat of formation + Delta-G solvation = -99.238658 kcal Electronic energy + Delta-G solvation = -21793.890042 eV Core-core repulsion = 18346.023586 eV Total energy + Delta-G solvation = -3447.866455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.69559 -40.69858 -38.68315 -37.94243 -36.52848 -34.36639 -33.62973 -31.50012 -30.93832 -29.14882 -27.67794 -27.17882 -24.54483 -23.41929 -23.07328 -21.74160 -19.67545 -19.42604 -18.79324 -18.71594 -17.70393 -17.29097 -16.75321 -16.38557 -16.12634 -15.89318 -15.49154 -15.38396 -15.01471 -14.85055 -14.37891 -14.27499 -14.08078 -13.76643 -13.60090 -13.12028 -12.96733 -12.90685 -12.76367 -12.51019 -12.43372 -12.25581 -12.14558 -12.00089 -11.83139 -11.75484 -11.54678 -11.22758 -10.80632 -10.02017 -9.71577 -9.01550 -8.47629 -6.16471 0.40987 0.72258 1.17721 1.24936 1.34024 1.44691 1.50676 1.66799 2.17400 2.82452 3.14804 3.38790 3.62763 3.74719 3.88409 4.07045 4.12505 4.19407 4.28235 4.28816 4.36190 4.37404 4.52276 4.53583 4.59517 4.71453 4.76568 4.97731 5.00210 5.04766 5.08581 5.11262 5.25827 5.34943 5.39031 5.60880 5.65152 5.68696 5.71466 5.89234 6.01313 6.19708 6.73223 6.96707 7.77494 8.75653 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002824 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.101111 B = 9911.547680 C =10576.354302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C -0.081 4.081 4 C -0.150 4.150 5 C 0.097 3.903 6 O -0.351 6.351 7 C 0.466 3.534 8 O -0.535 6.535 9 C -0.061 4.061 10 C -0.038 4.038 11 C -0.176 4.176 12 C -0.073 4.073 13 C -0.242 4.242 14 C 0.111 3.889 15 O -0.233 6.233 16 C -0.415 4.415 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.020 2.980 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.255 1.255 24 C -0.190 4.190 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.156 0.844 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.321 18.048 -12.700 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.118 4.118 4 C -0.208 4.208 5 C 0.024 3.976 6 O -0.268 6.268 7 C 0.311 3.689 8 O -0.424 6.424 9 C -0.098 4.098 10 C -0.038 4.038 11 C -0.195 4.195 12 C -0.091 4.091 13 C -0.261 4.261 14 C 0.061 3.939 15 O -0.140 6.140 16 C -0.491 4.491 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.839 3.161 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.209 4.209 25 H 0.138 0.862 26 H 0.123 0.877 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.174 0.826 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.963 18.077 -12.247 22.918 hybrid contribution 0.876 -0.895 0.605 1.391 sum -6.086 17.182 -11.642 21.629 Atomic orbital electron populations 1.23925 0.95038 1.03198 0.97963 1.21639 0.96219 0.93255 1.03853 1.20560 1.00374 0.92755 0.98149 1.21783 1.01693 1.01595 0.95706 1.21855 0.90479 0.82757 1.02506 1.86436 1.41262 1.14994 1.84070 1.24081 0.88705 0.84682 0.71462 1.90726 1.18790 1.86830 1.46076 1.20390 0.95863 0.84199 1.09316 1.19129 0.97543 0.94998 0.92129 1.21016 1.03169 0.97696 0.97588 1.21152 0.95713 0.95223 0.96964 1.21346 1.07972 1.04090 0.92737 1.19861 0.93644 0.93701 0.86680 1.83937 1.68104 1.34901 1.27094 1.21797 1.36696 0.95067 0.95589 0.88125 1.26616 0.98267 1.03788 0.93417 1.70180 1.46691 1.40744 0.98409 0.84639 0.78428 0.74727 0.78352 1.18289 1.19546 1.17953 1.20238 1.04739 0.97165 0.98750 0.86233 0.87746 0.90841 0.89018 0.91019 0.92431 0.93766 0.91346 0.90279 0.82595 0.84972 0.83137 0.83418 0.86253 0.91821 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 13.66 67.78 0.93 -1.58 16 2 C -0.15 -2.52 5.31 -16.48 -0.09 -2.61 16 3 C -0.08 -1.02 6.10 29.85 0.18 -0.84 16 4 C -0.15 -1.93 9.89 71.98 0.71 -1.22 16 5 C 0.10 2.14 5.88 71.24 0.42 2.56 16 6 O -0.35 -8.37 8.61 -51.40 -0.44 -8.81 16 7 C 0.47 13.22 7.95 71.24 0.57 13.79 16 8 O -0.54 -20.00 15.78 21.95 0.35 -19.65 16 9 C -0.06 -1.45 5.94 29.10 0.17 -1.28 16 10 C -0.04 -1.29 4.37 -19.88 -0.09 -1.38 16 11 C -0.18 -5.59 9.70 22.30 0.22 -5.38 16 12 C -0.07 -2.56 10.04 22.25 0.22 -2.34 16 13 C -0.24 -10.96 9.17 22.39 0.21 -10.75 16 14 C 0.11 5.78 6.65 22.58 0.15 5.93 16 15 O -0.23 -14.56 9.76 -22.74 -0.22 -14.78 16 16 C -0.42 -24.88 9.49 67.92 0.64 -24.24 16 17 H 0.10 5.52 5.21 -2.91 -0.02 5.50 16 18 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 19 N -0.92 -57.82 13.67 21.61 0.30 -57.52 16 20 Si 1.02 43.68 29.55 68.60 2.03 45.71 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 C -0.19 -8.43 9.65 22.39 0.22 -8.21 16 25 H 0.12 1.31 7.99 -2.91 -0.02 1.28 16 26 H 0.10 1.73 6.82 -2.91 -0.02 1.71 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.09 0.86 7.99 -2.39 -0.02 0.84 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.08 1.71 8.13 -2.39 -0.02 1.70 16 34 H 0.16 2.37 8.09 -2.39 -0.02 2.35 16 35 H 0.13 2.69 8.08 -2.39 -0.02 2.67 16 36 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 37 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.12 5.44 5.64 -2.91 -0.02 5.43 16 39 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -77.92 349.11 7.96 -69.96 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 1.03 Total: 23.55 kcal Atomic # 6 Polarization: -43.38 SS G_CDS: 4.93 Total: -38.45 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.30 Total: -57.52 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -0.32 Total: -43.25 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.92 7.96 -69.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773545692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.276 kcal (2) G-P(sol) polarization free energy of solvation -77.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds