Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47009 * 2 1 4 4 C 1.50702 * 113.00173 * 296.13258 * 3 2 1 5 5 O 1.20823 * 119.99885 * 342.82203 * 4 3 2 6 6 O 1.34225 * 119.99976 * 162.81614 * 4 3 2 7 7 C 1.45198 * 117.00153 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47716 * 180.02562 * 7 6 4 9 9 C 1.38637 * 119.75091 * 89.99495 * 8 7 6 10 10 C 1.37616 * 120.24957 * 180.27733 * 9 8 7 11 11 C 1.40716 * 119.74261 * 359.52743 * 10 9 8 12 12 C 1.41395 * 120.24508 * 180.22451 * 11 10 9 13 13 H 1.08001 * 120.00490 * 205.46358 * 12 11 10 14 14 C 1.39951 * 119.99798 * 25.46711 * 12 11 10 15 15 N 1.30829 * 120.00016 * 15.88222 * 14 12 11 16 16 Si 1.86800 * 120.00128 * 195.88057 * 14 12 11 17 17 H 1.48500 * 109.46827 * 59.99961 * 16 14 12 18 18 H 1.48500 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47043 * 300.00216 * 16 14 12 20 20 C 1.40719 * 119.51175 * 0.47419 * 11 10 9 21 21 C 1.37613 * 119.74713 * 359.74932 * 20 11 10 22 22 C 1.54030 * 113.92646 * 68.07017 * 3 2 1 23 23 O 1.44174 * 85.51742 * 91.65755 * 22 3 2 24 24 C 1.44169 * 93.34330 * 24.19695 * 23 22 3 25 25 H 1.09000 * 109.46780 * 304.68256 * 1 2 3 26 26 H 1.08996 * 109.47600 * 64.69053 * 1 2 3 27 27 H 1.09007 * 109.47013 * 184.69125 * 1 2 3 28 28 H 1.09006 * 109.46616 * 240.00213 * 2 1 3 29 29 H 1.08999 * 109.47234 * 120.00521 * 2 1 3 30 30 H 1.09003 * 109.47335 * 59.99979 * 7 6 4 31 31 H 1.09006 * 109.47114 * 300.00700 * 7 6 4 32 32 H 1.08003 * 119.87338 * 0.02562 * 9 8 7 33 33 H 1.07998 * 120.12680 * 179.72376 * 10 9 8 34 34 H 0.96993 * 119.99873 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.12469 * 179.73290 * 20 11 10 36 36 H 1.08000 * 119.88029 * 180.02562 * 21 20 11 37 37 H 1.09001 * 113.86499 * 205.80356 * 22 3 2 38 38 H 1.08995 * 113.86569 * 337.50954 * 22 3 2 39 39 H 1.08998 * 113.86454 * 221.66201 * 24 23 22 40 40 H 1.08996 * 113.98847 * 89.96373 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6602 2.2013 -1.2454 5 8 1.3006 1.6028 -2.2314 6 8 1.7213 3.5421 -1.2592 7 6 1.3403 4.2068 -2.4926 8 6 1.4716 5.6982 -2.3210 9 6 2.6715 6.3226 -2.6250 10 6 2.8045 7.6832 -2.4667 11 6 1.7137 8.4421 -2.0038 12 6 1.8372 9.8413 -1.8418 13 1 1.2064 10.3610 -1.1357 14 6 2.7768 10.5528 -2.5964 15 7 3.3166 10.0045 -3.6545 16 14 3.2602 12.2855 -2.0929 17 1 3.8423 12.2598 -0.7270 18 1 4.2641 12.8170 -3.0495 19 1 2.0581 13.1573 -2.1024 20 6 0.5007 7.7975 -1.6982 21 6 0.3918 6.4353 -1.8597 22 6 1.7524 2.2067 1.3061 23 8 3.0486 1.7403 1.7315 24 6 3.5264 1.5767 0.3811 25 1 -0.3633 0.5848 0.8451 26 1 -0.3634 0.4393 -0.9290 27 1 -0.3633 -1.0243 0.0841 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.3071 3.9582 -2.7351 31 1 1.9929 3.8754 -3.3004 32 1 3.5062 5.7386 -2.9836 33 1 3.7415 8.1670 -2.6999 34 1 3.9681 10.4975 -4.1773 35 1 -0.3415 8.3698 -1.3381 36 1 -0.5383 5.9384 -1.6262 37 1 1.6922 3.2878 1.1803 38 1 0.9245 1.7962 1.8841 39 1 4.1055 0.6665 0.2255 40 1 4.0084 2.4642 -0.0290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776110473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -90.687485 kcal Electronic energy + Delta-G solvation = -22624.681019 eV Core-core repulsion = 19177.185370 eV Total energy + Delta-G solvation = -3447.495649 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41636 -39.45405 -37.71033 -36.23535 -33.89684 -33.72289 -30.91249 -29.44089 -29.24564 -27.23090 -26.78712 -24.14460 -23.54892 -22.53889 -21.12638 -20.09912 -19.27521 -17.61312 -17.42090 -16.90565 -16.59672 -16.06420 -15.54258 -15.31294 -14.71192 -14.24071 -14.06422 -13.87896 -13.59900 -13.21274 -13.00483 -12.59896 -12.41555 -12.23275 -12.07947 -12.02885 -11.59803 -11.47807 -11.33611 -11.22480 -11.16080 -10.91729 -10.65926 -10.63180 -10.21413 -10.04744 -9.80955 -9.71665 -9.49492 -9.25952 -7.60075 -7.48520 -6.88285 -4.50131 2.21221 2.36733 2.91476 2.97452 3.00592 3.03370 3.25621 3.45028 3.83788 3.94750 4.33373 4.49552 4.76973 4.95048 5.15118 5.22180 5.25435 5.29425 5.35605 5.56598 5.61106 5.64394 5.66843 5.72931 5.80052 5.88634 5.92562 6.03220 6.09006 6.20604 6.27174 6.76500 6.83864 6.94894 7.14298 7.23017 7.48040 7.69596 7.92528 7.95675 7.97584 8.15975 8.50686 8.75579 8.83191 10.05428 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.003209 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.078384 B = 8724.068817 C = 9001.465511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 C -0.133 4.133 4 C 0.462 3.538 5 O -0.511 6.511 6 O -0.348 6.348 7 C 0.136 3.864 8 C -0.236 4.236 9 C -0.076 4.076 10 C -0.168 4.168 11 C 0.119 3.881 12 C -0.456 4.456 13 H 0.080 0.920 14 C 0.075 3.925 15 N -0.788 5.788 16 Si 0.912 3.088 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.230 4.230 21 C -0.064 4.064 22 C 0.055 3.945 23 O -0.373 6.373 24 C 0.060 3.940 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.283 0.717 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -13.091 5.826 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.126 4.126 3 C -0.134 4.134 4 C 0.305 3.695 5 O -0.400 6.400 6 O -0.264 6.264 7 C 0.064 3.936 8 C -0.238 4.238 9 C -0.094 4.094 10 C -0.188 4.188 11 C 0.117 3.883 12 C -0.485 4.485 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.413 5.413 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.249 4.249 21 C -0.082 4.082 22 C -0.022 4.022 23 O -0.291 6.291 24 C -0.017 4.017 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.610 -13.205 5.546 14.336 hybrid contribution 0.085 0.838 -0.356 0.914 sum -0.525 -12.367 5.190 13.423 Atomic orbital electron populations 1.21816 0.94851 1.02188 1.02592 1.21199 0.96885 0.91130 1.03419 1.23954 0.99233 0.97629 0.92571 1.23307 0.74547 0.82384 0.89279 1.90606 1.43242 1.70043 1.36114 1.86680 1.78095 1.19141 1.42521 1.21747 0.99159 0.90264 0.82386 1.18654 0.96982 0.90405 1.17722 1.20538 0.94895 0.95073 0.98934 1.21320 0.99567 0.91858 1.06023 1.17688 0.90003 0.93204 0.87430 1.19661 1.16635 0.92561 1.19672 0.90193 1.25974 0.94286 1.00825 0.93323 1.69802 1.21656 1.38732 1.11087 0.86303 0.79180 0.81245 0.79679 1.18668 1.20219 1.18890 1.20965 0.97569 0.93781 1.12599 1.20380 0.96099 0.94175 0.97578 1.24119 0.87333 1.00121 0.90583 1.89697 1.28504 1.86140 1.24786 1.23963 0.92574 1.03055 0.82111 0.92586 0.91816 0.92018 0.90217 0.89970 0.92053 0.91985 0.89352 0.86157 0.90567 0.88689 0.89322 0.87934 0.88355 0.88186 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.58 37.16 0.36 -1.18 16 2 C -0.09 -0.89 4.96 -26.73 -0.13 -1.02 16 3 C -0.13 -1.58 0.96 -154.58 -0.15 -1.73 16 4 C 0.46 7.09 6.72 36.01 0.24 7.33 16 5 O -0.51 -8.83 15.02 -18.75 -0.28 -9.12 16 6 O -0.35 -6.03 9.30 -39.24 -0.37 -6.40 16 7 C 0.14 2.52 5.58 36.00 0.20 2.73 16 8 C -0.24 -5.10 5.54 -104.33 -0.58 -5.68 16 9 C -0.08 -1.73 9.67 -39.66 -0.38 -2.12 16 10 C -0.17 -4.26 8.69 -38.87 -0.34 -4.59 16 11 C 0.12 3.09 5.57 -106.82 -0.59 2.50 16 12 C -0.46 -11.71 9.06 -37.74 -0.34 -12.05 16 13 H 0.08 1.96 7.89 -52.49 -0.41 1.54 16 14 C 0.07 1.81 5.18 -17.34 -0.09 1.72 16 15 N -0.79 -19.70 10.91 55.55 0.61 -19.10 16 16 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 17 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 21 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 22 C 0.06 0.63 8.08 37.61 0.30 0.94 16 23 O -0.37 -4.69 12.37 -35.23 -0.44 -5.12 16 24 C 0.06 0.67 8.35 37.61 0.31 0.98 16 25 H 0.06 0.50 6.86 -51.93 -0.36 0.14 16 26 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.82 7.98 -51.93 -0.41 0.41 16 29 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 30 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 34 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 35 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.10 1.29 7.41 -51.93 -0.39 0.91 16 38 H 0.10 0.92 6.97 -51.93 -0.36 0.56 16 39 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 LS Contribution 337.13 15.07 5.08 5.08 Total: -1.00 -27.90 337.13 -7.92 -35.81 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.54 Total: 5.68 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -1.96 Total: -19.82 kcal Atomic # 7 Polarization: -19.70 SS G_CDS: 0.61 Total: -19.10 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.08 Total: -20.64 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.90 -7.92 -35.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776110473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.872 kcal (2) G-P(sol) polarization free energy of solvation -27.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds