Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47009 * 2 1 4 4 C 1.50702 * 113.00173 * 296.13258 * 3 2 1 5 5 O 1.20823 * 119.99885 * 342.82203 * 4 3 2 6 6 O 1.34225 * 119.99976 * 162.81614 * 4 3 2 7 7 C 1.45198 * 117.00153 * 180.02562 * 6 4 3 8 8 C 1.50697 * 109.47716 * 180.02562 * 7 6 4 9 9 C 1.38637 * 119.75091 * 89.99495 * 8 7 6 10 10 C 1.37616 * 120.24957 * 180.27733 * 9 8 7 11 11 C 1.40716 * 119.74261 * 359.52743 * 10 9 8 12 12 C 1.41395 * 120.24508 * 180.22451 * 11 10 9 13 13 H 1.08001 * 120.00490 * 205.46358 * 12 11 10 14 14 C 1.39951 * 119.99798 * 25.46711 * 12 11 10 15 15 N 1.30829 * 120.00016 * 15.88222 * 14 12 11 16 16 Si 1.86800 * 120.00128 * 195.88057 * 14 12 11 17 17 H 1.48500 * 109.46827 * 59.99961 * 16 14 12 18 18 H 1.48500 * 109.47007 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47043 * 300.00216 * 16 14 12 20 20 C 1.40719 * 119.51175 * 0.47419 * 11 10 9 21 21 C 1.37613 * 119.74713 * 359.74932 * 20 11 10 22 22 C 1.54030 * 113.92646 * 68.07017 * 3 2 1 23 23 O 1.44174 * 85.51742 * 91.65755 * 22 3 2 24 24 C 1.44169 * 93.34330 * 24.19695 * 23 22 3 25 25 H 1.09000 * 109.46780 * 304.68256 * 1 2 3 26 26 H 1.08996 * 109.47600 * 64.69053 * 1 2 3 27 27 H 1.09007 * 109.47013 * 184.69125 * 1 2 3 28 28 H 1.09006 * 109.46616 * 240.00213 * 2 1 3 29 29 H 1.08999 * 109.47234 * 120.00521 * 2 1 3 30 30 H 1.09003 * 109.47335 * 59.99979 * 7 6 4 31 31 H 1.09006 * 109.47114 * 300.00700 * 7 6 4 32 32 H 1.08003 * 119.87338 * 0.02562 * 9 8 7 33 33 H 1.07998 * 120.12680 * 179.72376 * 10 9 8 34 34 H 0.96993 * 119.99873 * 180.02562 * 15 14 12 35 35 H 1.08003 * 120.12469 * 179.73290 * 20 11 10 36 36 H 1.08000 * 119.88029 * 180.02562 * 21 20 11 37 37 H 1.09001 * 113.86499 * 205.80356 * 22 3 2 38 38 H 1.08995 * 113.86569 * 337.50954 * 22 3 2 39 39 H 1.08998 * 113.86454 * 221.66201 * 24 23 22 40 40 H 1.08996 * 113.98847 * 89.96373 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6602 2.2013 -1.2454 5 8 1.3006 1.6028 -2.2314 6 8 1.7213 3.5421 -1.2592 7 6 1.3403 4.2068 -2.4926 8 6 1.4716 5.6982 -2.3210 9 6 2.6715 6.3226 -2.6250 10 6 2.8045 7.6832 -2.4667 11 6 1.7137 8.4421 -2.0038 12 6 1.8372 9.8413 -1.8418 13 1 1.2064 10.3610 -1.1357 14 6 2.7768 10.5528 -2.5964 15 7 3.3166 10.0045 -3.6545 16 14 3.2602 12.2855 -2.0929 17 1 3.8423 12.2598 -0.7270 18 1 4.2641 12.8170 -3.0495 19 1 2.0581 13.1573 -2.1024 20 6 0.5007 7.7975 -1.6982 21 6 0.3918 6.4353 -1.8597 22 6 1.7524 2.2067 1.3061 23 8 3.0486 1.7403 1.7315 24 6 3.5264 1.5767 0.3811 25 1 -0.3633 0.5848 0.8451 26 1 -0.3634 0.4393 -0.9290 27 1 -0.3633 -1.0243 0.0841 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 0.3071 3.9582 -2.7351 31 1 1.9929 3.8754 -3.3004 32 1 3.5062 5.7386 -2.9836 33 1 3.7415 8.1670 -2.6999 34 1 3.9681 10.4975 -4.1773 35 1 -0.3415 8.3698 -1.3381 36 1 -0.5383 5.9384 -1.6262 37 1 1.6922 3.2878 1.1803 38 1 0.9245 1.7962 1.8841 39 1 4.1055 0.6665 0.2255 40 1 4.0084 2.4642 -0.0290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776110473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -104.505653 kcal Electronic energy + Delta-G solvation = -22625.280219 eV Core-core repulsion = 19177.185370 eV Total energy + Delta-G solvation = -3448.094849 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.46519 -40.67981 -39.45998 -37.62992 -35.69238 -34.60561 -32.64329 -31.25402 -30.28889 -28.83940 -27.71392 -25.78564 -24.36851 -23.80504 -22.96664 -21.86121 -20.39496 -19.27941 -18.65885 -18.15942 -17.74625 -17.24569 -16.99170 -16.55955 -16.22983 -15.70494 -15.45451 -15.09441 -14.83922 -14.52018 -14.22626 -14.05820 -13.88498 -13.75942 -13.39005 -13.08189 -13.04832 -12.99480 -12.80586 -12.42271 -12.33304 -12.21311 -12.14908 -11.77630 -11.69058 -11.54046 -11.31191 -11.14793 -11.04443 -10.74389 -9.45178 -9.34208 -8.68716 -6.41607 0.70445 1.00596 1.09578 1.38012 1.43903 1.50613 1.83422 2.18921 2.50893 2.71248 3.01314 3.42262 3.65626 3.82293 3.97194 4.05600 4.07658 4.31314 4.34583 4.41488 4.45720 4.48642 4.51621 4.54073 4.56698 4.84010 4.89967 4.98371 4.99205 5.03188 5.10702 5.15424 5.28152 5.29901 5.37825 5.48419 5.63633 5.86466 6.04372 6.12220 6.30695 6.63014 6.68140 6.87477 6.95606 8.27617 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029006 B = 0.003209 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.078384 B = 8724.068817 C = 9001.465511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.128 4.128 4 C 0.463 3.537 5 O -0.530 6.530 6 O -0.356 6.356 7 C 0.142 3.858 8 C -0.229 4.229 9 C -0.081 4.081 10 C -0.192 4.192 11 C 0.089 3.911 12 C -0.494 4.494 13 H 0.080 0.920 14 C 0.035 3.965 15 N -0.821 5.821 16 Si 0.985 3.015 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.258 1.258 20 C -0.244 4.244 21 C -0.065 4.065 22 C 0.055 3.945 23 O -0.384 6.384 24 C 0.060 3.940 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.290 0.710 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -14.456 6.817 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.123 4.123 3 C -0.130 4.130 4 C 0.307 3.693 5 O -0.420 6.420 6 O -0.273 6.273 7 C 0.070 3.930 8 C -0.230 4.230 9 C -0.099 4.099 10 C -0.211 4.211 11 C 0.086 3.914 12 C -0.523 4.523 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.446 5.446 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.263 4.263 21 C -0.083 4.083 22 C -0.021 4.021 23 O -0.303 6.303 24 C -0.017 4.017 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.101 0.899 35 H 0.121 0.879 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.769 -14.592 6.539 16.009 hybrid contribution 0.090 1.073 -0.669 1.268 sum -0.679 -13.520 5.870 14.755 Atomic orbital electron populations 1.21822 0.94708 1.03311 1.01596 1.21261 0.96990 0.89684 1.04325 1.24154 0.99977 0.98267 0.90558 1.24007 0.73623 0.81428 0.90233 1.90601 1.44144 1.70049 1.37193 1.86648 1.78434 1.20617 1.41562 1.21543 1.00003 0.88423 0.83070 1.18968 0.96147 0.92303 1.15623 1.20774 0.96181 0.94443 0.98534 1.21288 0.99117 0.92941 1.07758 1.18040 0.90970 0.93935 0.88441 1.19923 1.18415 0.93048 1.20936 0.90200 1.26818 0.93606 1.04901 0.92762 1.69855 1.22235 1.40570 1.11953 0.85209 0.79018 0.75957 0.79314 1.18399 1.19151 1.18258 1.21181 0.97298 0.94899 1.12966 1.20702 0.97408 0.93581 0.96646 1.24179 0.87833 0.99441 0.90639 1.89693 1.28970 1.86135 1.25472 1.24115 0.92265 1.04044 0.81282 0.91673 0.94340 0.90234 0.90518 0.87743 0.90994 0.91532 0.87615 0.87763 0.89899 0.87885 0.86373 0.89432 0.85933 0.85434 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.58 71.98 0.69 -1.99 16 2 C -0.09 -1.47 4.96 30.59 0.15 -1.32 16 3 C -0.13 -2.77 0.96 -52.23 -0.05 -2.82 16 4 C 0.46 13.50 6.72 71.24 0.48 13.98 16 5 O -0.53 -17.59 15.02 21.97 0.33 -17.26 16 6 O -0.36 -11.88 9.30 -51.37 -0.48 -12.36 16 7 C 0.14 5.06 5.58 71.23 0.40 5.46 16 8 C -0.23 -9.73 5.54 -19.67 -0.11 -9.84 16 9 C -0.08 -3.73 9.67 22.22 0.21 -3.51 16 10 C -0.19 -10.00 8.69 22.73 0.20 -9.80 16 11 C 0.09 4.73 5.57 -21.29 -0.12 4.61 16 12 C -0.49 -26.19 9.06 23.46 0.21 -25.98 16 13 H 0.08 4.05 7.89 -2.91 -0.02 4.02 16 14 C 0.03 1.72 5.18 85.26 0.44 2.16 16 15 N -0.82 -42.16 10.91 21.83 0.24 -41.92 16 16 Si 0.98 37.23 29.59 68.60 2.03 39.26 16 17 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 18 H -0.27 -9.55 7.11 99.48 0.71 -8.84 16 19 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 20 C -0.24 -11.78 9.80 22.73 0.22 -11.55 16 21 C -0.07 -2.81 9.67 22.22 0.21 -2.59 16 22 C 0.06 1.16 8.08 72.27 0.58 1.75 16 23 O -0.38 -8.78 12.37 -148.98 -1.84 -10.62 16 24 C 0.06 1.19 8.35 72.28 0.60 1.80 16 25 H 0.06 0.98 6.86 -2.39 -0.02 0.96 16 26 H 0.04 0.85 6.91 -2.39 -0.02 0.83 16 27 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 28 H 0.08 1.39 7.98 -2.38 -0.02 1.37 16 29 H 0.10 1.39 8.09 -2.39 -0.02 1.37 16 30 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.07 2.31 8.07 -2.38 -0.02 2.30 16 32 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 34 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 35 H 0.10 4.66 8.06 -2.91 -0.02 4.63 16 36 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.09 2.11 7.41 -2.39 -0.02 2.09 16 38 H 0.12 1.94 6.97 -2.39 -0.02 1.93 16 39 H 0.13 1.83 8.10 -2.39 -0.02 1.81 16 40 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 Total: -1.00 -60.90 337.13 5.45 -55.46 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 1.04 Total: 27.11 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 4.13 Total: -39.66 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.24 Total: -41.92 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -1.99 Total: -40.24 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Total: -60.90 5.45 -55.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776110473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.049 kcal (2) G-P(sol) polarization free energy of solvation -60.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds