Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00351 * 2 1 4 4 C 1.52997 * 109.47847 * 124.99898 * 3 2 1 5 5 O 1.42893 * 109.47393 * 180.02562 * 4 3 2 6 6 C 1.42904 * 113.99980 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47130 * 180.02562 * 6 5 4 8 8 O 1.20823 * 120.00135 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00138 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00359 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.07998 * 119.99486 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00170 * 359.97438 * 1 2 3 27 27 H 1.08011 * 120.00350 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46919 * 4.99846 * 3 2 1 29 29 H 1.08997 * 109.47204 * 245.00465 * 3 2 1 30 30 H 1.09005 * 109.46903 * 59.99939 * 4 3 2 31 31 H 1.09006 * 109.46996 * 300.00363 * 4 3 2 32 32 H 1.09005 * 109.46711 * 60.00030 * 6 5 4 33 33 H 1.08993 * 109.47456 * 300.00225 * 6 5 4 34 34 H 1.08996 * 109.46887 * 299.99947 * 10 9 7 35 35 H 1.08998 * 109.46721 * 59.99644 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3332 1.1816 5 8 3.7492 2.5709 1.1818 6 6 4.6878 2.7002 2.2516 7 6 5.3790 4.0358 2.1547 8 8 5.0964 4.7989 1.2616 9 8 6.3086 4.3777 3.0606 10 6 6.9334 5.6791 2.9051 11 6 7.9419 5.8869 4.0055 12 6 7.5491 6.4796 5.1956 13 6 8.4602 6.6691 6.2095 14 6 9.7975 6.2696 6.0299 15 6 10.7440 6.4655 7.0620 16 1 11.7948 6.5402 6.8241 17 6 10.3190 6.5625 8.3919 18 7 9.1304 6.1347 8.7317 19 14 11.4491 7.3029 9.6818 20 1 11.2171 8.7675 9.7613 21 1 11.1658 6.6845 11.0019 22 1 12.8630 7.0453 9.3078 23 6 10.1861 5.6744 4.8156 24 6 9.2567 5.4896 3.8177 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5066 1.0920 31 1 2.4773 1.2357 2.1130 32 1 5.4274 1.9022 2.1844 33 1 4.1641 2.6308 3.2049 34 1 7.4345 5.7283 1.9384 35 1 6.1715 6.4567 2.9594 36 1 6.5234 6.7901 5.3292 37 1 8.1512 7.1269 7.1375 38 1 8.8357 6.2023 9.6534 39 1 11.2100 5.3645 4.6670 40 1 9.5525 5.0325 2.8849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776113550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -103.542920 kcal Electronic energy + Delta-G solvation = -21188.221613 eV Core-core repulsion = 17740.168511 eV Total energy + Delta-G solvation = -3448.053102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.14967 -38.31398 -37.61307 -36.01290 -35.25760 -33.88762 -30.97952 -30.20896 -29.38886 -28.21717 -26.79569 -23.81916 -23.29662 -21.12976 -21.00728 -20.12391 -20.05464 -17.58206 -17.40698 -16.90097 -16.74158 -16.08083 -15.88029 -15.43198 -15.12348 -14.49070 -14.04190 -13.93053 -13.64795 -13.53602 -13.00392 -12.67348 -12.35754 -12.22126 -12.04032 -11.80197 -11.72644 -11.52552 -11.42988 -11.21057 -11.01377 -10.84073 -10.46932 -10.21048 -10.13134 -9.97272 -9.74881 -9.70253 -9.48237 -9.24628 -7.58369 -7.47278 -6.88479 -4.48420 1.83835 2.28135 2.41907 2.79850 2.98983 3.01790 3.04633 3.15203 3.83940 3.87971 4.49231 4.59195 4.70933 4.83904 4.92352 5.02996 5.04734 5.09107 5.12707 5.47012 5.59972 5.60372 5.66058 5.68041 5.69824 6.05474 6.23584 6.23710 6.29911 6.36020 6.78670 6.82610 6.86362 6.95846 7.16563 7.24757 7.49925 7.72138 7.94084 7.99162 8.07587 8.17412 8.52154 8.76697 8.84872 10.05246 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.002229 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.327954 B =12557.810196 C =12976.952013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.094 4.094 4 C 0.066 3.934 5 O -0.369 6.369 6 C 0.070 3.930 7 C 0.456 3.544 8 O -0.501 6.501 9 O -0.349 6.349 10 C 0.138 3.862 11 C -0.237 4.237 12 C -0.075 4.075 13 C -0.171 4.171 14 C 0.118 3.882 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.063 4.063 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 -9.290 -8.961 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.131 4.131 4 C -0.011 4.011 5 O -0.289 6.289 6 C -0.008 4.008 7 C 0.297 3.703 8 O -0.389 6.389 9 O -0.266 6.266 10 C 0.066 3.934 11 C -0.238 4.238 12 C -0.094 4.094 13 C -0.190 4.190 14 C 0.115 3.885 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.249 4.249 24 C -0.082 4.082 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.220 -8.915 -9.139 16.997 hybrid contribution 0.453 0.059 0.815 0.935 sum -10.767 -8.856 -8.323 16.237 Atomic orbital electron populations 1.23916 0.95900 1.02099 1.00538 1.22801 0.96019 0.97964 1.00408 1.20646 0.97939 0.95973 0.98525 1.22509 0.94009 0.85787 0.98750 1.87937 1.54485 1.37867 1.48568 1.21707 0.93076 0.93714 0.92264 1.23078 0.78546 0.88519 0.80123 1.90647 1.62154 1.52208 1.33926 1.86688 1.49396 1.39931 1.50610 1.21763 0.93635 0.79871 0.98112 1.18679 0.93027 1.15236 0.96890 1.20551 0.97493 0.98468 0.92866 1.21301 0.94024 1.05164 0.98497 1.17701 0.92623 0.86812 0.91364 1.19694 0.95202 1.42823 0.90709 0.90120 1.25979 0.95598 0.92757 1.00108 1.69827 1.18722 1.32240 1.20130 0.86260 0.81141 0.80021 0.79050 1.19136 1.20210 1.18497 1.20963 0.98245 1.09357 0.96373 1.20400 0.92904 0.97709 0.97164 0.88279 0.88371 0.87102 0.90433 0.89882 0.92718 0.92729 0.88992 0.88971 0.91961 0.91908 0.89272 0.86204 0.90609 0.88682 0.89246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.19 14.32 29.02 0.42 -0.78 16 2 C -0.15 -1.05 9.52 -36.03 -0.34 -1.39 16 3 C -0.09 -0.77 6.03 -27.89 -0.17 -0.94 16 4 C 0.07 0.59 5.92 37.16 0.22 0.81 16 5 O -0.37 -4.78 9.88 -55.18 -0.54 -5.32 16 6 C 0.07 0.85 6.53 36.00 0.24 1.09 16 7 C 0.46 7.61 8.03 36.00 0.29 7.90 16 8 O -0.50 -9.82 16.25 -25.47 -0.41 -10.23 16 9 O -0.35 -6.47 10.20 -39.25 -0.40 -6.87 16 10 C 0.14 2.65 5.58 36.01 0.20 2.85 16 11 C -0.24 -5.23 5.54 -104.33 -0.58 -5.81 16 12 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 13 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 14 C 0.12 3.07 5.58 -106.82 -0.60 2.48 16 15 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 17 C 0.07 1.81 5.14 -17.34 -0.09 1.73 16 18 N -0.78 -19.68 10.95 55.55 0.61 -19.07 16 19 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 23 C -0.23 -5.54 9.80 -38.88 -0.38 -5.92 16 24 C -0.06 -1.41 9.67 -39.66 -0.38 -1.80 16 25 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 26 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 27 H 0.11 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 38 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 39 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -29.42 352.40 -8.47 -37.89 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.76 Total: 3.96 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.24 Total: -18.66 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.61 Total: -19.07 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -1.36 Total: -22.42 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.42 -8.47 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.651 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds