Wall clock time and date at job start Tue Mar 31 2020 06:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00351 * 2 1 4 4 C 1.52997 * 109.47847 * 124.99898 * 3 2 1 5 5 O 1.42893 * 109.47393 * 180.02562 * 4 3 2 6 6 C 1.42904 * 113.99980 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47130 * 180.02562 * 6 5 4 8 8 O 1.20823 * 120.00135 * 0.02562 * 7 6 5 9 9 O 1.34227 * 120.00138 * 180.02562 * 7 6 5 10 10 C 1.45202 * 117.00359 * 179.97438 * 9 7 6 11 11 C 1.50700 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74771 * 269.72351 * 11 10 9 13 13 C 1.37624 * 120.24964 * 179.72094 * 12 11 10 14 14 C 1.40717 * 119.73679 * 0.57836 * 13 12 11 15 15 C 1.41402 * 120.23847 * 179.67688 * 14 13 12 16 16 H 1.07998 * 120.00074 * 204.40505 * 15 14 13 17 17 C 1.39945 * 119.99874 * 24.40735 * 15 14 13 18 18 N 1.30824 * 120.00405 * 17.84641 * 17 15 14 19 19 Si 1.86797 * 119.99936 * 197.84469 * 17 15 14 20 20 H 1.48502 * 109.47151 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47468 * 210.00136 * 19 17 15 22 22 H 1.48500 * 109.47187 * 330.00150 * 19 17 15 23 23 C 1.40710 * 119.51686 * 359.69906 * 14 13 12 24 24 C 1.37615 * 119.74272 * 0.02562 * 23 14 13 25 25 H 1.07998 * 119.99486 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00170 * 359.97438 * 1 2 3 27 27 H 1.08011 * 120.00350 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46919 * 4.99846 * 3 2 1 29 29 H 1.08997 * 109.47204 * 245.00465 * 3 2 1 30 30 H 1.09005 * 109.46903 * 59.99939 * 4 3 2 31 31 H 1.09006 * 109.46996 * 300.00363 * 4 3 2 32 32 H 1.09005 * 109.46711 * 60.00030 * 6 5 4 33 33 H 1.08993 * 109.47456 * 300.00225 * 6 5 4 34 34 H 1.08996 * 109.46887 * 299.99947 * 10 9 7 35 35 H 1.08998 * 109.46721 * 59.99644 * 10 9 7 36 36 H 1.08005 * 119.87970 * 359.97438 * 12 11 10 37 37 H 1.07997 * 120.13071 * 180.27955 * 13 12 11 38 38 H 0.97002 * 120.00394 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.12782 * 179.97438 * 23 14 13 40 40 H 1.08003 * 119.87400 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3332 1.1816 5 8 3.7492 2.5709 1.1818 6 6 4.6878 2.7002 2.2516 7 6 5.3790 4.0358 2.1547 8 8 5.0964 4.7989 1.2616 9 8 6.3086 4.3777 3.0606 10 6 6.9334 5.6791 2.9051 11 6 7.9419 5.8869 4.0055 12 6 7.5491 6.4796 5.1956 13 6 8.4602 6.6691 6.2095 14 6 9.7975 6.2696 6.0299 15 6 10.7440 6.4655 7.0620 16 1 11.7948 6.5402 6.8241 17 6 10.3190 6.5625 8.3919 18 7 9.1304 6.1347 8.7317 19 14 11.4491 7.3029 9.6818 20 1 11.2171 8.7675 9.7613 21 1 11.1658 6.6845 11.0019 22 1 12.8630 7.0453 9.3078 23 6 10.1861 5.6744 4.8156 24 6 9.2567 5.4896 3.8177 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5400 0.9352 0.0004 27 1 1.8501 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6213 1.4026 -0.9314 30 1 3.7400 0.5066 1.0920 31 1 2.4773 1.2357 2.1130 32 1 5.4274 1.9022 2.1844 33 1 4.1641 2.6308 3.2049 34 1 7.4345 5.7283 1.9384 35 1 6.1715 6.4567 2.9594 36 1 6.5234 6.7901 5.3292 37 1 8.1512 7.1269 7.1375 38 1 8.8357 6.2023 9.6534 39 1 11.2100 5.3645 4.6670 40 1 9.5525 5.0325 2.8849 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776113550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:14 Heat of formation + Delta-G solvation = -117.318798 kcal Electronic energy + Delta-G solvation = -21188.818980 eV Core-core repulsion = 17740.168511 eV Total energy + Delta-G solvation = -3448.650469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51484 -39.58327 -39.04536 -37.43767 -35.90092 -35.69334 -32.68386 -31.25643 -31.02962 -29.42551 -28.25442 -25.51281 -23.96912 -22.96477 -22.35485 -21.80218 -20.67658 -19.27641 -18.82223 -17.96062 -17.92961 -17.23672 -17.11717 -16.84947 -16.08563 -15.87366 -15.62906 -15.41023 -14.82030 -14.51389 -14.30978 -13.96166 -13.86052 -13.72709 -13.55474 -13.38892 -12.86409 -12.71070 -12.61340 -12.55990 -12.18507 -12.10279 -11.98280 -11.73230 -11.60859 -11.39663 -11.28660 -11.05122 -10.76300 -10.26488 -9.44828 -9.34366 -8.69345 -6.40408 0.67704 1.10174 1.12469 1.28859 1.38802 1.43049 1.52490 1.68690 2.19351 2.65474 2.97840 3.61170 3.80791 4.00011 4.07418 4.08453 4.11560 4.17552 4.20286 4.27483 4.45769 4.46752 4.48599 4.51220 4.54625 4.90140 5.00300 5.02722 5.10162 5.11503 5.29667 5.38419 5.45282 5.64523 5.73783 5.85242 5.87488 6.00340 6.05081 6.13618 6.31185 6.63694 6.73392 6.87834 6.96357 8.27285 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.002229 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.327954 B =12557.810196 C =12976.952013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.160 4.160 3 C -0.094 4.094 4 C 0.062 3.938 5 O -0.399 6.399 6 C 0.075 3.925 7 C 0.455 3.545 8 O -0.535 6.535 9 O -0.357 6.357 10 C 0.142 3.858 11 C -0.232 4.232 12 C -0.080 4.080 13 C -0.194 4.194 14 C 0.086 3.914 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.817 5.817 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.267 1.267 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.065 4.065 25 H 0.113 0.887 26 H 0.096 0.904 27 H 0.125 0.875 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.445 -10.574 -9.189 18.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C -0.131 4.131 4 C -0.014 4.014 5 O -0.319 6.319 6 C -0.001 4.001 7 C 0.299 3.701 8 O -0.424 6.424 9 O -0.274 6.274 10 C 0.070 3.930 11 C -0.233 4.233 12 C -0.098 4.098 13 C -0.213 4.213 14 C 0.084 3.916 15 C -0.520 4.520 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.442 5.442 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.083 4.083 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.143 0.857 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.122 0.878 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.692 -10.220 -9.381 18.142 hybrid contribution 0.455 0.392 0.734 0.949 sum -11.236 -9.828 -8.647 17.251 Atomic orbital electron populations 1.24086 0.95938 1.02742 0.99733 1.22824 0.96161 0.97695 1.01089 1.20642 0.97734 0.96556 0.98161 1.22729 0.94329 0.84821 0.99491 1.87899 1.54981 1.40002 1.49004 1.21840 0.93750 0.91297 0.93248 1.23987 0.77548 0.89760 0.78833 1.90634 1.63042 1.53602 1.35152 1.86645 1.50155 1.39168 1.51469 1.21594 0.93383 0.80729 0.97334 1.18978 0.93817 1.13584 0.96923 1.20786 0.98004 0.98194 0.92863 1.21274 0.94623 1.06595 0.98833 1.18068 0.93210 0.87788 0.92554 1.19940 0.95269 1.44955 0.91873 0.90171 1.26829 0.97142 0.92432 1.01742 1.69871 1.20347 1.32907 1.21108 0.85152 0.78944 0.79049 0.76290 1.18681 1.19155 1.18064 1.21175 0.99211 1.09544 0.96428 1.20720 0.92664 0.97074 0.97820 0.86870 0.88598 0.85735 0.91474 0.90544 0.90834 0.91511 0.86105 0.86470 0.90806 0.91373 0.87537 0.87720 0.89836 0.87831 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 14.32 67.78 0.97 -1.10 16 2 C -0.16 -1.88 9.52 25.65 0.24 -1.64 16 3 C -0.09 -1.43 6.03 29.85 0.18 -1.25 16 4 C 0.06 0.97 5.92 71.98 0.43 1.39 16 5 O -0.40 -9.55 9.88 -129.90 -1.28 -10.83 16 6 C 0.08 1.63 6.53 71.23 0.47 2.10 16 7 C 0.45 14.39 8.03 71.23 0.57 14.96 16 8 O -0.53 -20.38 16.25 28.40 0.46 -19.92 16 9 O -0.36 -12.56 10.20 -51.39 -0.52 -13.08 16 10 C 0.14 5.22 5.58 71.24 0.40 5.62 16 11 C -0.23 -10.00 5.54 -19.68 -0.11 -10.11 16 12 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 13 C -0.19 -10.15 8.70 22.73 0.20 -9.95 16 14 C 0.09 4.62 5.58 -21.29 -0.12 4.50 16 15 C -0.49 -26.00 9.05 23.46 0.21 -25.79 16 16 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 17 C 0.03 1.71 5.14 85.26 0.44 2.14 16 18 N -0.82 -41.83 10.95 21.83 0.24 -41.59 16 19 Si 0.99 37.08 29.59 68.60 2.03 39.11 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 C -0.24 -11.84 9.80 22.73 0.22 -11.61 16 24 C -0.06 -2.81 9.67 22.22 0.21 -2.60 16 25 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 26 H 0.10 1.07 7.84 -2.91 -0.02 1.05 16 27 H 0.12 1.11 8.06 -2.90 -0.02 1.09 16 28 H 0.07 1.13 7.79 -2.38 -0.02 1.11 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 35 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 36 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.10 5.70 6.16 -2.91 -0.02 5.68 16 38 H 0.29 13.36 8.30 -92.71 -0.77 12.60 16 39 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -64.34 352.40 6.47 -57.87 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 1.02 Total: 25.28 kcal Atomic # 6 Polarization: -41.36 SS G_CDS: 4.53 Total: -36.83 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.24 Total: -41.59 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.35 Total: -43.83 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -64.34 6.47 -57.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.447 kcal (2) G-P(sol) polarization free energy of solvation -64.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds