Wall clock time and date at job start Tue Mar 31 2020 06:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47628 * 2 1 4 4 C 1.42900 * 114.00425 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.54539 * 355.66825 * 4 3 2 6 6 C 1.53075 * 117.51492 * 141.38881 * 4 3 2 7 7 C 1.53000 * 117.49988 * 209.99860 * 4 3 2 8 8 H 1.08994 * 117.50081 * 359.97438 * 7 4 3 9 9 C 1.50699 * 117.49765 * 144.99750 * 7 4 3 10 10 O 1.20827 * 120.00041 * 359.90976 * 9 7 4 11 11 O 1.34225 * 119.99978 * 179.91419 * 9 7 4 12 12 C 1.45204 * 116.99938 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.46923 * 179.97438 * 12 11 9 14 14 C 1.38636 * 119.74856 * 90.00579 * 13 12 11 15 15 C 1.37615 * 120.25099 * 179.97438 * 14 13 12 16 16 C 1.40715 * 119.74248 * 359.97438 * 15 14 13 17 17 C 1.41394 * 120.24162 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00371 * 335.24779 * 17 16 15 19 19 C 1.39948 * 119.99975 * 154.97131 * 17 16 15 20 20 N 1.30822 * 119.99705 * 343.04511 * 19 17 16 21 21 Si 1.86794 * 120.00394 * 163.05271 * 19 17 16 22 22 H 1.48506 * 109.47383 * 89.99449 * 21 19 17 23 23 H 1.48499 * 109.47272 * 209.99569 * 21 19 17 24 24 H 1.48507 * 109.47050 * 329.99988 * 21 19 17 25 25 C 1.40717 * 119.51220 * 0.26404 * 16 15 14 26 26 C 1.37613 * 119.74327 * 359.48020 * 25 16 15 27 27 H 1.09000 * 109.47714 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47042 * 300.00068 * 1 2 3 29 29 H 1.08994 * 109.47150 * 59.99351 * 1 2 3 30 30 H 1.08999 * 109.46813 * 239.99726 * 2 1 3 31 31 H 1.09007 * 109.46931 * 120.00377 * 2 1 3 32 32 H 1.09000 * 117.49403 * 359.97438 * 6 4 3 33 33 H 1.08996 * 117.51318 * 214.95709 * 6 4 3 34 34 H 1.09001 * 109.47024 * 60.00143 * 12 11 9 35 35 H 1.09001 * 109.47222 * 299.99896 * 12 11 9 36 36 H 1.08003 * 119.87086 * 359.95111 * 14 13 12 37 37 H 1.08001 * 120.12944 * 180.02562 * 15 14 13 38 38 H 0.96998 * 120.00224 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.12162 * 179.74375 * 25 16 15 40 40 H 1.08005 * 119.87227 * 180.23030 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9770 0.5195 0.0733 6 6 4.0518 2.5735 -0.8479 7 6 4.0427 2.6873 0.6779 8 1 3.3586 3.4089 1.1243 9 6 5.3541 2.5034 1.3971 10 8 5.8814 1.4166 1.4237 11 8 5.9365 3.5470 2.0083 12 6 7.1982 3.2963 2.6819 13 6 7.6977 4.5745 3.3046 14 6 7.3325 4.8957 4.6028 15 6 7.7831 6.0600 5.1818 16 6 8.6181 6.9254 4.4511 17 6 9.0868 8.1246 5.0354 18 1 8.5317 8.5871 5.8381 19 6 10.2731 8.7091 4.5776 20 7 11.1148 8.0072 3.8632 21 14 10.6548 10.4913 4.9867 22 1 11.4083 10.5554 6.2647 23 1 11.4735 11.0844 3.8990 24 1 9.3858 11.2509 5.1217 25 6 8.9782 6.5915 3.1324 26 6 8.5201 5.4194 2.5755 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3734 3.2195 -1.4051 33 1 5.0063 2.3656 -1.3314 34 1 7.9299 2.9342 1.9597 35 1 7.0525 2.5458 3.4589 36 1 6.6916 4.2299 5.1617 37 1 7.4977 6.3081 6.1935 38 1 11.9368 8.4124 3.5455 39 1 9.6152 7.2506 2.5611 40 1 8.7982 5.1593 1.5648 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114044.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:06 Heat of formation + Delta-G solvation = -107.802007 kcal Electronic energy + Delta-G solvation = -21499.841168 eV Core-core repulsion = 18051.603378 eV Total energy + Delta-G solvation = -3448.237790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68557 -39.77689 -39.30723 -37.62591 -36.18108 -35.69413 -32.62781 -31.73879 -31.25274 -29.13721 -26.52053 -24.96571 -23.81767 -23.21345 -22.97165 -21.88979 -21.41417 -19.28755 -19.14527 -17.99790 -17.51276 -17.42189 -17.07966 -16.52003 -16.15958 -15.76760 -15.60896 -15.44528 -14.56133 -14.21960 -14.11903 -13.88056 -13.75961 -13.60168 -13.43898 -13.21360 -13.10729 -13.02668 -12.79051 -12.42708 -12.24385 -12.19053 -11.94318 -11.78364 -11.71048 -11.60127 -11.44933 -11.30672 -11.04903 -10.32424 -9.45498 -9.35176 -8.69860 -6.41079 0.69391 0.99123 1.09136 1.37692 1.41209 1.53202 1.73730 2.19045 2.48866 2.67030 2.75680 3.52851 3.60805 3.73796 3.92961 3.97960 4.05773 4.08257 4.18188 4.30194 4.42406 4.45883 4.48627 4.49929 4.53103 4.73813 4.87093 4.94929 4.98633 5.03065 5.10760 5.28065 5.28300 5.37281 5.44990 5.63495 5.86194 6.04082 6.12019 6.13276 6.30231 6.62575 6.69052 6.87078 6.95329 8.27204 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.002397 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.164489 B =11677.874480 C =11718.178289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.368 6.368 4 C 0.060 3.940 5 H 0.127 0.873 6 C -0.133 4.133 7 C -0.187 4.187 8 H 0.145 0.855 9 C 0.490 3.510 10 O -0.541 6.541 11 O -0.356 6.356 12 C 0.140 3.860 13 C -0.231 4.231 14 C -0.066 4.066 15 C -0.245 4.245 16 C 0.087 3.913 17 C -0.492 4.492 18 H 0.080 0.920 19 C 0.034 3.966 20 N -0.819 5.819 21 Si 0.985 3.015 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.193 4.193 26 C -0.080 4.080 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.134 0.866 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.291 0.709 39 H 0.105 0.895 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.905 -10.777 -8.924 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.287 6.287 4 C 0.001 3.999 5 H 0.145 0.855 6 C -0.170 4.170 7 C -0.207 4.207 8 H 0.162 0.838 9 C 0.335 3.665 10 O -0.432 6.432 11 O -0.272 6.272 12 C 0.068 3.932 13 C -0.233 4.233 14 C -0.084 4.084 15 C -0.265 4.265 16 C 0.085 3.915 17 C -0.521 4.521 18 H 0.098 0.902 19 C -0.182 4.182 20 N -0.444 5.444 21 Si 0.806 3.194 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.213 4.213 26 C -0.098 4.098 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.611 -10.930 -8.997 19.639 hybrid contribution 0.822 0.547 0.520 1.116 sum -12.789 -10.383 -8.477 18.526 Atomic orbital electron populations 1.21780 0.92274 1.03690 1.02919 1.22846 0.96610 0.82032 1.01405 1.87816 1.17983 1.29021 1.93880 1.22696 0.82528 0.93924 1.00738 0.85529 1.23658 1.03676 1.00920 0.88727 1.22310 0.93697 1.06702 0.97947 0.83766 1.23027 0.86077 0.81742 0.75629 1.90601 1.65458 1.27674 1.59485 1.86667 1.37932 1.39513 1.63138 1.21590 0.81376 0.95242 0.94974 1.18979 1.08260 0.99860 0.96153 1.20714 0.97328 0.95959 0.94434 1.21177 1.08512 0.97074 0.99721 1.18060 0.89732 0.92168 0.91540 1.19920 1.07037 1.07196 1.17962 0.90193 1.26842 0.94630 1.03998 0.92712 1.69863 1.08323 1.38793 1.27453 0.85156 0.79193 0.76010 0.79091 1.18552 1.18953 1.18189 1.21277 1.05537 0.98515 0.95921 1.20780 0.96731 0.94174 0.98142 0.88846 0.92431 0.91725 0.91463 0.92744 0.84792 0.86503 0.91213 0.90934 0.86478 0.87847 0.89843 0.87710 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.67 6.53 71.98 0.47 1.14 16 3 O -0.37 -7.38 10.60 -148.98 -1.58 -8.96 16 4 C 0.06 1.21 5.96 30.62 0.18 1.39 16 5 H 0.13 2.52 7.46 -2.39 -0.02 2.51 16 6 C -0.13 -2.42 10.19 30.62 0.31 -2.10 16 7 C -0.19 -4.48 6.25 -11.54 -0.07 -4.55 16 8 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 9 C 0.49 15.39 7.74 71.24 0.55 15.94 16 10 O -0.54 -18.72 16.01 21.96 0.35 -18.37 16 11 O -0.36 -12.88 10.20 -51.37 -0.52 -13.40 16 12 C 0.14 5.24 5.58 71.24 0.40 5.64 16 13 C -0.23 -10.18 5.54 -19.67 -0.11 -10.29 16 14 C -0.07 -2.95 9.67 22.22 0.21 -2.74 16 15 C -0.25 -12.14 9.80 22.73 0.22 -11.92 16 16 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 17 C -0.49 -26.36 9.05 23.46 0.21 -26.15 16 18 H 0.08 4.10 7.90 -2.91 -0.02 4.08 16 19 C 0.03 1.70 5.15 85.26 0.44 2.13 16 20 N -0.82 -42.32 10.96 21.83 0.24 -42.08 16 21 Si 0.99 37.46 29.59 68.60 2.03 39.49 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 23 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 25 C -0.19 -10.24 8.69 22.73 0.20 -10.04 16 26 C -0.08 -3.77 9.67 22.22 0.21 -3.55 16 27 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 35 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 39 H 0.10 5.76 6.19 -2.91 -0.02 5.74 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -62.23 349.64 5.40 -56.83 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 1.03 Total: 27.89 kcal Atomic # 6 Polarization: -45.24 SS G_CDS: 3.85 Total: -41.39 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.24 Total: -42.08 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.75 Total: -40.73 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -62.23 5.40 -56.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114044.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.976 kcal (2) G-P(sol) polarization free energy of solvation -62.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds