Wall clock time and date at job start Tue Mar 31 2020 06:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46961 * 2 1 4 4 C 1.42901 * 113.99747 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.56186 * 4.31079 * 4 3 2 6 6 C 1.53005 * 117.50054 * 218.62399 * 4 3 2 7 7 C 1.52998 * 117.50156 * 150.00000 * 4 3 2 8 8 H 1.09001 * 117.51992 * 214.97180 * 7 4 3 9 9 C 1.50705 * 117.49748 * 0.02562 * 7 4 3 10 10 O 1.20823 * 119.99717 * 0.02562 * 9 7 4 11 11 O 1.34220 * 119.99988 * 180.28660 * 9 7 4 12 12 C 1.45199 * 116.99968 * 179.72174 * 11 9 7 13 13 C 1.50703 * 109.47413 * 180.02562 * 12 11 9 14 14 C 1.38634 * 119.75066 * 269.73342 * 13 12 11 15 15 C 1.37624 * 120.24694 * 179.76404 * 14 13 12 16 16 C 1.40712 * 119.74231 * 0.47708 * 15 14 13 17 17 C 1.41402 * 120.24132 * 179.78880 * 16 15 14 18 18 H 1.07997 * 120.00000 * 204.37439 * 17 16 15 19 19 C 1.39948 * 119.99773 * 24.38556 * 17 16 15 20 20 N 1.30820 * 120.00324 * 17.86008 * 19 17 16 21 21 Si 1.86796 * 119.99576 * 197.86511 * 19 17 16 22 22 H 1.48496 * 109.47346 * 59.99790 * 21 19 17 23 23 H 1.48503 * 109.46920 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47286 * 299.99433 * 21 19 17 25 25 C 1.40718 * 119.51697 * 359.77645 * 16 15 14 26 26 C 1.37616 * 119.74258 * 359.97438 * 25 16 15 27 27 H 1.08993 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46798 * 299.99920 * 1 2 3 29 29 H 1.09002 * 109.47068 * 59.99592 * 1 2 3 30 30 H 1.08994 * 109.46984 * 240.00021 * 2 1 3 31 31 H 1.08993 * 109.47046 * 120.00093 * 2 1 3 32 32 H 1.08999 * 117.50076 * 145.01621 * 6 4 3 33 33 H 1.09001 * 117.51639 * 359.97438 * 6 4 3 34 34 H 1.08998 * 109.47282 * 299.99955 * 12 11 9 35 35 H 1.08999 * 109.46930 * 60.00662 * 12 11 9 36 36 H 1.07995 * 119.87178 * 359.97438 * 14 13 12 37 37 H 1.07996 * 120.12702 * 180.27953 * 15 14 13 38 38 H 0.96993 * 120.00110 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.13103 * 180.02562 * 25 16 15 40 40 H 1.08000 * 119.87734 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5198 -0.0749 6 6 4.0518 2.5727 0.8465 7 6 4.0421 2.6876 -0.6792 8 1 4.9905 2.5552 -1.1999 9 6 3.0957 3.6855 -1.2954 10 8 1.9030 3.4999 -1.2414 11 8 3.5779 4.7777 -1.9087 12 6 2.6085 5.6923 -2.4848 13 6 3.3293 6.8500 -3.1261 14 6 3.6065 7.9857 -2.3809 15 6 4.2686 9.0470 -2.9548 16 6 4.6554 8.9801 -4.3061 17 6 5.3322 10.0662 -4.9077 18 1 5.2854 10.2057 -5.9776 19 6 6.0627 10.9601 -4.1166 20 7 6.4165 10.6216 -2.9035 21 14 6.5326 12.6367 -4.7931 22 1 5.3028 13.3911 -5.1446 23 1 7.2972 13.3884 -3.7656 24 1 7.3710 12.4637 -6.0065 25 6 4.3641 7.8245 -5.0543 26 6 3.7057 6.7732 -4.4582 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 5.0065 2.3644 1.3295 33 1 3.3740 3.2191 1.4040 34 1 2.0189 5.1697 -3.2381 35 1 1.9490 6.0640 -1.7006 36 1 3.3048 8.0363 -1.3452 37 1 4.4875 9.9289 -2.3713 38 1 6.9231 11.2410 -2.3554 39 1 4.6568 7.7624 -6.0920 40 1 3.4814 5.8851 -5.0303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:12 Heat of formation + Delta-G solvation = -89.346059 kcal Electronic energy + Delta-G solvation = -21852.160790 eV Core-core repulsion = 18404.723310 eV Total energy + Delta-G solvation = -3447.437480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21154 -38.51288 -37.56552 -36.01649 -35.13024 -33.83041 -30.97280 -30.72601 -29.34003 -27.37352 -25.04391 -23.35083 -23.05053 -22.33744 -21.05597 -20.12247 -19.96261 -17.95817 -17.36507 -16.65171 -15.90543 -15.76683 -15.67435 -15.27972 -15.04009 -14.26492 -13.88144 -13.68567 -13.40153 -12.81753 -12.79317 -12.59035 -12.38863 -12.24066 -12.03959 -11.96255 -11.70641 -11.37843 -11.18529 -11.15176 -10.98021 -10.81501 -10.64027 -10.42647 -10.07310 -9.99030 -9.66851 -9.44192 -9.30298 -9.18857 -7.53303 -7.42078 -6.84172 -4.43972 2.44364 2.49709 2.98152 3.02366 3.04256 3.06742 3.27466 3.42301 3.69437 3.87254 4.50908 4.57204 4.65312 4.75168 4.88346 5.08506 5.15552 5.20665 5.28121 5.51528 5.56066 5.65743 5.73161 5.73943 5.77013 5.82894 5.97897 6.15389 6.29153 6.34814 6.89347 6.99661 7.01088 7.09207 7.21553 7.29596 7.54454 7.77388 7.98047 8.04610 8.21892 8.28806 8.56359 8.80967 8.89580 10.09651 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039964 B = 0.002628 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.460997 B =10653.365798 C =10980.420230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.327 6.327 4 C 0.049 3.951 5 H 0.122 0.878 6 C -0.157 4.157 7 C -0.170 4.170 8 H 0.139 0.861 9 C 0.480 3.520 10 O -0.495 6.495 11 O -0.350 6.350 12 C 0.137 3.863 13 C -0.234 4.234 14 C -0.076 4.076 15 C -0.171 4.171 16 C 0.118 3.882 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.786 5.786 21 Si 0.911 3.089 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.230 4.230 26 C -0.064 4.064 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.283 0.717 39 H 0.094 0.906 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 -15.472 6.719 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.245 6.245 4 C -0.010 4.010 5 H 0.139 0.861 6 C -0.194 4.194 7 C -0.189 4.189 8 H 0.156 0.844 9 C 0.322 3.678 10 O -0.383 6.383 11 O -0.267 6.267 12 C 0.065 3.935 13 C -0.235 4.235 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.115 3.885 17 C -0.486 4.486 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.250 4.250 26 C -0.083 4.083 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.934 -15.238 6.916 17.190 hybrid contribution 0.493 0.611 -0.306 0.842 sum -3.441 -14.627 6.610 16.416 Atomic orbital electron populations 1.21711 0.93567 1.01916 1.03548 1.22553 0.95931 0.83881 0.99792 1.88171 1.17089 1.25631 1.93567 1.22677 0.83611 0.93056 1.01670 0.86088 1.23484 1.03236 1.01954 0.90769 1.22339 1.01207 0.98046 0.97324 0.84365 1.22319 0.87857 0.81295 0.76369 1.90672 1.16816 1.75388 1.55396 1.86696 1.42743 1.31809 1.65486 1.21688 0.88809 0.87267 0.95709 1.18705 1.14925 0.95110 0.94764 1.20543 0.97986 0.93900 0.96989 1.21294 1.02147 0.98860 0.96696 1.17679 0.88095 0.90865 0.91835 1.19637 1.26138 1.07560 0.95274 0.90227 1.25969 0.94038 0.99926 0.94463 1.69819 1.26702 1.35626 1.08885 0.86327 0.79412 0.81225 0.79564 1.18718 1.20255 1.18907 1.20960 1.09396 0.95072 0.99558 1.20393 0.97160 0.96902 0.93810 0.91246 0.91869 0.91536 0.93347 0.93427 0.86644 0.87454 0.92242 0.92183 0.89340 0.86235 0.90600 0.88735 0.89328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.52 6.53 37.16 0.24 0.77 16 3 O -0.33 -4.37 8.48 -57.35 -0.49 -4.86 16 4 C 0.05 0.53 6.40 -26.73 -0.17 0.36 16 5 H 0.12 0.88 7.93 -51.93 -0.41 0.47 16 6 C -0.16 -1.64 10.18 -26.73 -0.27 -1.91 16 7 C -0.17 -2.18 6.30 -91.77 -0.58 -2.76 16 8 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 9 C 0.48 8.45 7.74 36.01 0.28 8.73 16 10 O -0.50 -9.78 14.68 -26.10 -0.38 -10.17 16 11 O -0.35 -6.94 10.20 -39.23 -0.40 -7.34 16 12 C 0.14 2.77 5.58 36.01 0.20 2.97 16 13 C -0.23 -5.34 5.54 -104.32 -0.58 -5.92 16 14 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 15 C -0.17 -4.45 8.70 -38.87 -0.34 -4.79 16 16 C 0.12 3.14 5.58 -106.82 -0.60 2.55 16 17 C -0.46 -11.98 9.05 -37.74 -0.34 -12.32 16 18 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 20 N -0.79 -20.06 10.95 55.55 0.61 -19.45 16 21 Si 0.91 18.30 29.59 -169.99 -5.03 13.27 16 22 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 26 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 36 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.12 3.19 6.15 -52.49 -0.32 2.86 16 38 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 39 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -30.50 347.13 -9.24 -39.74 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.77 Total: 5.23 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.01 Total: -21.64 kcal Atomic # 7 Polarization: -20.06 SS G_CDS: 0.61 Total: -19.45 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -1.27 Total: -22.37 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.50 -9.24 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.609 kcal (2) G-P(sol) polarization free energy of solvation -30.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds