Wall clock time and date at job start Tue Mar 31 2020 06:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.46961 * 2 1 4 4 C 1.42901 * 113.99747 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.56186 * 4.31079 * 4 3 2 6 6 C 1.53005 * 117.50054 * 218.62399 * 4 3 2 7 7 C 1.52998 * 117.50156 * 150.00000 * 4 3 2 8 8 H 1.09001 * 117.51992 * 214.97180 * 7 4 3 9 9 C 1.50705 * 117.49748 * 0.02562 * 7 4 3 10 10 O 1.20823 * 119.99717 * 0.02562 * 9 7 4 11 11 O 1.34220 * 119.99988 * 180.28660 * 9 7 4 12 12 C 1.45199 * 116.99968 * 179.72174 * 11 9 7 13 13 C 1.50703 * 109.47413 * 180.02562 * 12 11 9 14 14 C 1.38634 * 119.75066 * 269.73342 * 13 12 11 15 15 C 1.37624 * 120.24694 * 179.76404 * 14 13 12 16 16 C 1.40712 * 119.74231 * 0.47708 * 15 14 13 17 17 C 1.41402 * 120.24132 * 179.78880 * 16 15 14 18 18 H 1.07997 * 120.00000 * 204.37439 * 17 16 15 19 19 C 1.39948 * 119.99773 * 24.38556 * 17 16 15 20 20 N 1.30820 * 120.00324 * 17.86008 * 19 17 16 21 21 Si 1.86796 * 119.99576 * 197.86511 * 19 17 16 22 22 H 1.48496 * 109.47346 * 59.99790 * 21 19 17 23 23 H 1.48503 * 109.46920 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47286 * 299.99433 * 21 19 17 25 25 C 1.40718 * 119.51697 * 359.77645 * 16 15 14 26 26 C 1.37616 * 119.74258 * 359.97438 * 25 16 15 27 27 H 1.08993 * 109.47278 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46798 * 299.99920 * 1 2 3 29 29 H 1.09002 * 109.47068 * 59.99592 * 1 2 3 30 30 H 1.08994 * 109.46984 * 240.00021 * 2 1 3 31 31 H 1.08993 * 109.47046 * 120.00093 * 2 1 3 32 32 H 1.08999 * 117.50076 * 145.01621 * 6 4 3 33 33 H 1.09001 * 117.51639 * 359.97438 * 6 4 3 34 34 H 1.08998 * 109.47282 * 299.99955 * 12 11 9 35 35 H 1.08999 * 109.46930 * 60.00662 * 12 11 9 36 36 H 1.07995 * 119.87178 * 359.97438 * 14 13 12 37 37 H 1.07996 * 120.12702 * 180.27953 * 15 14 13 38 38 H 0.96993 * 120.00110 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.13103 * 180.02562 * 25 16 15 40 40 H 1.08000 * 119.87734 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5198 -0.0749 6 6 4.0518 2.5727 0.8465 7 6 4.0421 2.6876 -0.6792 8 1 4.9905 2.5552 -1.1999 9 6 3.0957 3.6855 -1.2954 10 8 1.9030 3.4999 -1.2414 11 8 3.5779 4.7777 -1.9087 12 6 2.6085 5.6923 -2.4848 13 6 3.3293 6.8500 -3.1261 14 6 3.6065 7.9857 -2.3809 15 6 4.2686 9.0470 -2.9548 16 6 4.6554 8.9801 -4.3061 17 6 5.3322 10.0662 -4.9077 18 1 5.2854 10.2057 -5.9776 19 6 6.0627 10.9601 -4.1166 20 7 6.4165 10.6216 -2.9035 21 14 6.5326 12.6367 -4.7931 22 1 5.3028 13.3911 -5.1446 23 1 7.2972 13.3884 -3.7656 24 1 7.3710 12.4637 -6.0065 25 6 4.3641 7.8245 -5.0543 26 6 3.7057 6.7732 -4.4582 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8899 32 1 5.0065 2.3644 1.3295 33 1 3.3740 3.2191 1.4040 34 1 2.0189 5.1697 -3.2381 35 1 1.9490 6.0640 -1.7006 36 1 3.3048 8.0363 -1.3452 37 1 4.4875 9.9289 -2.3713 38 1 6.9231 11.2410 -2.3554 39 1 4.6568 7.7624 -6.0920 40 1 3.4814 5.8851 -5.0303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:11 Heat of formation + Delta-G solvation = -104.197137 kcal Electronic energy + Delta-G solvation = -21852.804781 eV Core-core repulsion = 18404.723310 eV Total energy + Delta-G solvation = -3448.081471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54619 -39.72448 -39.19618 -37.40720 -36.14065 -35.68701 -32.61397 -31.67237 -31.25223 -29.12583 -26.48680 -24.92451 -23.76291 -23.13443 -22.96754 -21.87493 -21.30477 -19.28550 -19.06588 -17.99376 -17.37159 -17.19436 -16.78029 -16.41937 -16.14431 -15.78330 -15.55478 -15.41095 -14.61392 -14.27114 -13.90199 -13.89279 -13.74998 -13.60175 -13.52027 -13.26087 -13.04453 -12.84862 -12.69353 -12.60219 -12.14889 -12.11064 -11.89806 -11.69655 -11.58287 -11.50481 -11.32272 -11.28131 -11.03968 -10.14432 -9.45858 -9.34994 -8.69448 -6.40741 0.72721 1.08941 1.16512 1.38078 1.45644 1.51363 1.93221 2.19252 2.53353 2.70752 2.78724 3.63304 3.69491 3.81882 3.90155 4.07762 4.08773 4.12310 4.20944 4.37800 4.45093 4.46195 4.51527 4.52436 4.52720 4.79010 4.88270 4.98163 4.98596 5.03371 5.10684 5.26979 5.28506 5.37791 5.56717 5.63387 5.86909 6.03861 6.12936 6.29939 6.34707 6.62496 6.86923 6.87651 6.95700 8.27229 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039964 B = 0.002628 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.460997 B =10653.365798 C =10980.420230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.367 6.367 4 C 0.057 3.943 5 H 0.164 0.836 6 C -0.145 4.145 7 C -0.193 4.193 8 H 0.161 0.839 9 C 0.474 3.526 10 O -0.523 6.523 11 O -0.364 6.364 12 C 0.142 3.858 13 C -0.231 4.231 14 C -0.081 4.081 15 C -0.194 4.194 16 C 0.087 3.913 17 C -0.492 4.492 18 H 0.081 0.919 19 C 0.034 3.966 20 N -0.818 5.818 21 Si 0.986 3.014 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.244 4.244 26 C -0.065 4.065 27 H 0.096 0.904 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.291 0.709 39 H 0.104 0.896 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 -17.064 7.197 18.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.286 6.286 4 C -0.002 4.002 5 H 0.181 0.819 6 C -0.182 4.182 7 C -0.212 4.212 8 H 0.178 0.822 9 C 0.318 3.682 10 O -0.412 6.412 11 O -0.282 6.282 12 C 0.070 3.930 13 C -0.232 4.232 14 C -0.099 4.099 15 C -0.213 4.213 16 C 0.085 3.915 17 C -0.521 4.521 18 H 0.099 0.901 19 C -0.182 4.182 20 N -0.443 5.443 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.264 4.264 26 C -0.084 4.084 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.171 0.829 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.186 -16.856 7.401 18.683 hybrid contribution 0.173 0.947 -0.385 1.036 sum -3.012 -15.910 7.017 17.647 Atomic orbital electron populations 1.21753 0.93803 1.03226 1.02007 1.22780 0.95888 0.82619 1.01467 1.88127 1.18739 1.28073 1.93651 1.23090 0.83024 0.94047 0.99992 0.81885 1.23636 1.04541 1.01201 0.88866 1.22557 1.01494 0.98251 0.98935 0.82160 1.23284 0.88517 0.80923 0.75452 1.90656 1.18290 1.75820 1.56396 1.86668 1.42712 1.32713 1.66097 1.21498 0.88552 0.86893 0.96050 1.18992 1.13737 0.95600 0.94886 1.20760 0.97508 0.93798 0.97882 1.21270 1.03814 0.99295 0.96913 1.18047 0.89002 0.91992 0.92477 1.19911 1.27539 1.08922 0.95729 0.90069 1.26858 0.93356 1.03431 0.94563 1.69868 1.27165 1.37153 1.10115 0.85189 0.79158 0.75905 0.79109 1.18441 1.19092 1.18139 1.21178 1.09954 0.95118 1.00137 1.20697 0.96232 0.97335 0.94101 0.88522 0.92699 0.93740 0.92249 0.90962 0.82892 0.89415 0.91277 0.91913 0.87815 0.87654 0.89812 0.87737 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.05 0.81 6.53 71.98 0.47 1.28 16 3 O -0.37 -9.27 8.48 -127.83 -1.08 -10.35 16 4 C 0.06 1.06 6.40 30.60 0.20 1.26 16 5 H 0.16 1.60 7.93 -2.39 -0.02 1.58 16 6 C -0.15 -2.65 10.18 30.60 0.31 -2.34 16 7 C -0.19 -4.55 6.30 -11.54 -0.07 -4.62 16 8 H 0.16 2.98 8.14 -2.39 -0.02 2.96 16 9 C 0.47 16.39 7.74 71.24 0.55 16.94 16 10 O -0.52 -20.63 14.68 29.01 0.43 -20.21 16 11 O -0.36 -14.24 10.20 -51.32 -0.52 -14.76 16 12 C 0.14 5.68 5.58 71.24 0.40 6.08 16 13 C -0.23 -10.52 5.54 -19.67 -0.11 -10.63 16 14 C -0.08 -3.94 9.67 22.22 0.21 -3.73 16 15 C -0.19 -10.43 8.70 22.73 0.20 -10.23 16 16 C 0.09 4.79 5.58 -21.29 -0.12 4.67 16 17 C -0.49 -26.47 9.05 23.46 0.21 -26.26 16 18 H 0.08 4.16 7.91 -2.91 -0.02 4.14 16 19 C 0.03 1.70 5.14 85.26 0.44 2.14 16 20 N -0.82 -42.63 10.95 21.83 0.24 -42.40 16 21 Si 0.99 37.58 29.59 68.60 2.03 39.61 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 23 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 25 C -0.24 -12.22 9.80 22.73 0.22 -11.99 16 26 C -0.07 -2.98 9.67 22.22 0.21 -2.77 16 27 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 35 H 0.06 2.44 8.07 -2.39 -0.02 2.42 16 36 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.11 5.87 6.15 -2.91 -0.02 5.85 16 38 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 39 H 0.10 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -68.25 347.13 5.98 -62.27 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 1.03 Total: 27.83 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 3.87 Total: -41.99 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.24 Total: -42.40 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: -1.18 Total: -45.32 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -68.25 5.98 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.925 kcal (2) G-P(sol) polarization free energy of solvation -68.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds