Wall clock time and date at job start Tue Mar 31 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46789 * 2 1 4 4 C 1.42902 * 113.99738 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.56098 * 4.31355 * 4 3 2 6 6 C 1.52997 * 117.49836 * 218.62160 * 4 3 2 7 7 C 1.53002 * 117.49890 * 149.99763 * 4 3 2 8 8 H 1.09001 * 117.49906 * 359.97438 * 7 4 3 9 9 C 1.50701 * 117.49933 * 214.97984 * 7 4 3 10 10 O 1.20823 * 119.99932 * 0.02562 * 9 7 4 11 11 O 1.34230 * 119.99879 * 180.02562 * 9 7 4 12 12 C 1.45201 * 116.99840 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46914 * 179.97438 * 12 11 9 14 14 C 1.38632 * 119.75057 * 269.72466 * 13 12 11 15 15 C 1.37617 * 120.24819 * 179.72361 * 14 13 12 16 16 C 1.40721 * 119.74300 * 0.57014 * 15 14 13 17 17 C 1.41399 * 120.24376 * 179.68063 * 16 15 14 18 18 H 1.08001 * 119.99662 * 24.40870 * 17 16 15 19 19 C 1.39938 * 120.00228 * 204.40525 * 17 16 15 20 20 N 1.30827 * 119.99802 * 17.84910 * 19 17 16 21 21 Si 1.86797 * 120.00179 * 197.85253 * 19 17 16 22 22 H 1.48500 * 109.47510 * 59.99772 * 21 19 17 23 23 H 1.48498 * 109.47394 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47162 * 299.99965 * 21 19 17 25 25 C 1.40716 * 119.51125 * 359.70522 * 16 15 14 26 26 C 1.37611 * 119.74656 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47750 * 59.99943 * 1 2 3 28 28 H 1.09005 * 109.47266 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47447 * 299.99833 * 1 2 3 30 30 H 1.09002 * 109.46748 * 240.00386 * 2 1 3 31 31 H 1.08999 * 109.47308 * 119.99756 * 2 1 3 32 32 H 1.09001 * 117.49879 * 145.02612 * 6 4 3 33 33 H 1.09003 * 117.50270 * 359.97438 * 6 4 3 34 34 H 1.08997 * 109.47278 * 60.00048 * 12 11 9 35 35 H 1.09001 * 109.47045 * 299.99866 * 12 11 9 36 36 H 1.07998 * 119.87237 * 359.97438 * 14 13 12 37 37 H 1.08004 * 120.13088 * 180.28613 * 15 14 13 38 38 H 0.96996 * 119.99644 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.12353 * 180.02562 * 25 16 15 40 40 H 1.07994 * 119.87750 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5198 -0.0749 6 6 4.0516 2.5728 0.8464 7 6 4.0420 2.6877 -0.6793 8 1 3.3574 3.4090 -1.1257 9 6 5.3531 2.5042 -1.3993 10 8 5.8811 1.4177 -1.4252 11 8 5.9342 3.5477 -2.0117 12 6 7.1956 3.2974 -2.6859 13 6 7.6932 4.5751 -3.3111 14 6 7.3311 4.8912 -4.6114 15 6 7.7750 6.0581 -5.1904 16 6 8.6092 6.9258 -4.4615 17 6 9.0768 8.1242 -5.0484 18 1 8.5243 8.5815 -5.8559 19 6 10.2556 8.7178 -4.5830 20 7 11.1028 8.0196 -3.8715 21 14 10.6193 10.5070 -4.9776 22 1 9.5420 11.3653 -4.4226 23 1 11.9203 10.8925 -4.3743 24 1 10.6849 10.6857 -6.4505 25 6 8.9749 6.5919 -3.1444 26 6 8.5147 5.4225 -2.5836 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 5.0064 2.3645 1.3293 33 1 3.3735 3.2191 1.4038 34 1 7.0500 2.5462 -3.4621 35 1 7.9281 2.9365 -1.9639 36 1 6.6951 4.2211 -5.1707 37 1 7.4880 6.3047 -6.2020 38 1 11.9196 8.4311 -3.5486 39 1 9.6143 7.2509 -2.5757 40 1 8.7943 5.1640 -1.5731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:14 Heat of formation + Delta-G solvation = -94.255981 kcal Electronic energy + Delta-G solvation = -21499.834250 eV Core-core repulsion = 18052.183860 eV Total energy + Delta-G solvation = -3447.650390 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39228 -38.70022 -37.66490 -36.27284 -35.21577 -33.87127 -31.16049 -30.78941 -29.37444 -27.43363 -25.11244 -23.41937 -23.21197 -22.38184 -21.09269 -20.22475 -20.04911 -18.07083 -17.39470 -16.74931 -16.40124 -15.99537 -15.85856 -15.35591 -15.00423 -14.36340 -13.89344 -13.78898 -13.29017 -13.05430 -12.93613 -12.66896 -12.54666 -12.32390 -12.15652 -12.03121 -11.54186 -11.54067 -11.32451 -11.22960 -11.14208 -10.82553 -10.65066 -10.61585 -10.27032 -10.16358 -9.72648 -9.50647 -9.45915 -9.21403 -7.56642 -7.46208 -6.87458 -4.46691 2.21729 2.37502 2.84296 3.00365 3.02120 3.03928 3.12533 3.48426 3.67305 3.85355 4.46128 4.49822 4.60368 4.73118 4.75332 4.98083 5.06431 5.09583 5.21301 5.43859 5.53404 5.56746 5.60608 5.66134 5.69043 5.77206 5.78677 6.07932 6.25066 6.31092 6.81370 6.87406 6.88045 6.97175 7.17899 7.26189 7.51283 7.73463 7.95329 8.00312 8.04099 8.18836 8.53348 8.78121 8.86417 10.06602 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037213 B = 0.002399 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.238420 B =11666.570703 C =11708.256318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.052 3.948 5 H 0.126 0.874 6 C -0.150 4.150 7 C -0.169 4.169 8 H 0.140 0.860 9 C 0.488 3.512 10 O -0.523 6.523 11 O -0.343 6.343 12 C 0.135 3.865 13 C -0.236 4.236 14 C -0.063 4.063 15 C -0.231 4.231 16 C 0.119 3.881 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.786 5.786 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.171 4.171 26 C -0.075 4.075 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.283 0.717 39 H 0.120 0.880 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.779 -10.175 8.127 18.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.273 6.273 4 C -0.007 4.007 5 H 0.143 0.857 6 C -0.188 4.188 7 C -0.189 4.189 8 H 0.158 0.842 9 C 0.332 3.668 10 O -0.414 6.414 11 O -0.259 6.259 12 C 0.064 3.936 13 C -0.238 4.238 14 C -0.082 4.082 15 C -0.250 4.250 16 C 0.116 3.884 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.190 4.190 26 C -0.093 4.093 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.461 -10.306 8.193 18.128 hybrid contribution 0.560 0.561 -0.313 0.852 sum -11.901 -9.745 7.879 17.282 Atomic orbital electron populations 1.21759 0.93431 1.02440 1.03285 1.22595 0.95624 0.83137 1.00648 1.87829 1.18316 1.27223 1.93913 1.22680 0.82194 0.94273 1.01524 0.85662 1.23505 1.03161 1.01567 0.90526 1.22243 0.95372 1.04793 0.96462 0.84205 1.22423 0.85405 0.82633 0.76321 1.90611 1.64630 1.27248 1.58872 1.86707 1.38375 1.38281 1.62546 1.21760 0.80626 0.96872 0.94374 1.18653 1.09586 0.99409 0.96135 1.20388 0.97535 0.96205 0.94037 1.20951 1.08444 0.96381 0.99230 1.17692 0.88624 0.91191 0.90886 1.19645 1.06196 1.06219 1.16426 0.90178 1.25977 0.95312 0.99893 0.93211 1.69817 1.07715 1.37017 1.26496 0.86317 0.78318 0.82019 0.79829 1.18667 1.20241 1.18892 1.21300 1.04465 0.97487 0.95765 1.20536 0.96881 0.94754 0.97170 0.91685 0.90875 0.91763 0.92823 0.92874 0.87214 0.86596 0.92025 0.91944 0.89288 0.88680 0.90569 0.86214 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.28 37.16 0.38 -0.61 16 2 C 0.06 0.46 6.53 37.16 0.24 0.70 16 3 O -0.35 -3.89 10.60 -35.23 -0.37 -4.27 16 4 C 0.05 0.58 5.95 -26.73 -0.16 0.42 16 5 H 0.13 1.36 7.46 -51.93 -0.39 0.98 16 6 C -0.15 -1.55 10.18 -26.73 -0.27 -1.83 16 7 C -0.17 -2.17 6.25 -91.77 -0.57 -2.74 16 8 H 0.14 1.70 8.14 -51.93 -0.42 1.28 16 9 C 0.49 8.02 7.74 36.01 0.28 8.30 16 10 O -0.52 -9.43 16.01 -18.75 -0.30 -9.73 16 11 O -0.34 -6.44 10.20 -39.26 -0.40 -6.84 16 12 C 0.14 2.63 5.58 36.01 0.20 2.83 16 13 C -0.24 -5.29 5.54 -104.33 -0.58 -5.87 16 14 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 15 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 16 C 0.12 3.13 5.58 -106.82 -0.60 2.54 16 17 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 18 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 19 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 20 N -0.79 -19.84 10.95 55.55 0.61 -19.23 16 21 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 25 C -0.17 -4.40 8.70 -38.88 -0.34 -4.74 16 26 C -0.07 -1.76 9.67 -39.66 -0.38 -2.14 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 35 H 0.06 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 38 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 39 H 0.12 3.16 6.16 -52.48 -0.32 2.83 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 349.60 15.07 5.27 5.27 Total: -1.00 -28.70 349.60 -8.97 -37.66 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.75 Total: 5.42 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -2.99 Total: -21.42 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.61 Total: -19.23 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -1.07 Total: -20.84 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.70 -8.97 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.592 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds