Wall clock time and date at job start Tue Mar 31 2020 06:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.46789 * 2 1 4 4 C 1.42902 * 113.99738 * 180.02562 * 3 2 1 5 5 H 1.09006 * 115.56098 * 4.31355 * 4 3 2 6 6 C 1.52997 * 117.49836 * 218.62160 * 4 3 2 7 7 C 1.53002 * 117.49890 * 149.99763 * 4 3 2 8 8 H 1.09001 * 117.49906 * 359.97438 * 7 4 3 9 9 C 1.50701 * 117.49933 * 214.97984 * 7 4 3 10 10 O 1.20823 * 119.99932 * 0.02562 * 9 7 4 11 11 O 1.34230 * 119.99879 * 180.02562 * 9 7 4 12 12 C 1.45201 * 116.99840 * 180.02562 * 11 9 7 13 13 C 1.50699 * 109.46914 * 179.97438 * 12 11 9 14 14 C 1.38632 * 119.75057 * 269.72466 * 13 12 11 15 15 C 1.37617 * 120.24819 * 179.72361 * 14 13 12 16 16 C 1.40721 * 119.74300 * 0.57014 * 15 14 13 17 17 C 1.41399 * 120.24376 * 179.68063 * 16 15 14 18 18 H 1.08001 * 119.99662 * 24.40870 * 17 16 15 19 19 C 1.39938 * 120.00228 * 204.40525 * 17 16 15 20 20 N 1.30827 * 119.99802 * 17.84910 * 19 17 16 21 21 Si 1.86797 * 120.00179 * 197.85253 * 19 17 16 22 22 H 1.48500 * 109.47510 * 59.99772 * 21 19 17 23 23 H 1.48498 * 109.47394 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47162 * 299.99965 * 21 19 17 25 25 C 1.40716 * 119.51125 * 359.70522 * 16 15 14 26 26 C 1.37611 * 119.74656 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47750 * 59.99943 * 1 2 3 28 28 H 1.09005 * 109.47266 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47447 * 299.99833 * 1 2 3 30 30 H 1.09002 * 109.46748 * 240.00386 * 2 1 3 31 31 H 1.08999 * 109.47308 * 119.99756 * 2 1 3 32 32 H 1.09001 * 117.49879 * 145.02612 * 6 4 3 33 33 H 1.09003 * 117.50270 * 359.97438 * 6 4 3 34 34 H 1.08997 * 109.47278 * 60.00048 * 12 11 9 35 35 H 1.09001 * 109.47045 * 299.99866 * 12 11 9 36 36 H 1.07998 * 119.87237 * 359.97438 * 14 13 12 37 37 H 1.08004 * 120.13088 * 180.28613 * 15 14 13 38 38 H 0.96996 * 119.99644 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.12353 * 180.02562 * 25 16 15 40 40 H 1.07994 * 119.87750 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9771 0.5198 -0.0749 6 6 4.0516 2.5728 0.8464 7 6 4.0420 2.6877 -0.6793 8 1 3.3574 3.4090 -1.1257 9 6 5.3531 2.5042 -1.3993 10 8 5.8811 1.4177 -1.4252 11 8 5.9342 3.5477 -2.0117 12 6 7.1956 3.2974 -2.6859 13 6 7.6932 4.5751 -3.3111 14 6 7.3311 4.8912 -4.6114 15 6 7.7750 6.0581 -5.1904 16 6 8.6092 6.9258 -4.4615 17 6 9.0768 8.1242 -5.0484 18 1 8.5243 8.5815 -5.8559 19 6 10.2556 8.7178 -4.5830 20 7 11.1028 8.0196 -3.8715 21 14 10.6193 10.5070 -4.9776 22 1 9.5420 11.3653 -4.4226 23 1 11.9203 10.8925 -4.3743 24 1 10.6849 10.6857 -6.4505 25 6 8.9749 6.5919 -3.1444 26 6 8.5147 5.4225 -2.5836 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 5.0064 2.3645 1.3293 33 1 3.3735 3.2191 1.4038 34 1 7.0500 2.5462 -3.4621 35 1 7.9281 2.9365 -1.9639 36 1 6.6951 4.2211 -5.1707 37 1 7.4880 6.3047 -6.2020 38 1 11.9196 8.4311 -3.5486 39 1 9.6143 7.2509 -2.5757 40 1 8.7943 5.1640 -1.5731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:14 Heat of formation + Delta-G solvation = -107.766184 kcal Electronic energy + Delta-G solvation = -21500.420097 eV Core-core repulsion = 18052.183860 eV Total energy + Delta-G solvation = -3448.236237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68601 -39.77727 -39.30711 -37.62625 -36.18293 -35.69875 -32.62780 -31.73830 -31.25046 -29.13879 -26.52188 -24.96568 -23.81742 -23.21118 -22.97115 -21.88822 -21.41427 -19.28781 -19.14555 -17.99760 -17.51317 -17.42192 -17.08143 -16.52012 -16.15956 -15.76853 -15.60810 -15.44633 -14.55953 -14.21783 -14.11884 -13.88125 -13.76030 -13.60199 -13.43639 -13.20730 -13.10673 -13.02734 -12.80711 -12.41853 -12.24287 -12.19083 -11.94480 -11.78424 -11.70822 -11.60393 -11.45056 -11.30361 -11.04184 -10.32574 -9.45665 -9.35788 -8.70289 -6.40878 0.69671 0.99136 1.09289 1.37822 1.43021 1.50881 1.74153 2.18844 2.48934 2.67041 2.75501 3.52785 3.60818 3.73919 3.93050 3.97906 4.05925 4.08352 4.18204 4.30161 4.42354 4.46057 4.48646 4.49908 4.53183 4.73717 4.87042 4.94924 4.98737 5.03059 5.10491 5.28068 5.28483 5.37448 5.45043 5.63388 5.86396 6.03931 6.12287 6.13213 6.30156 6.62456 6.69087 6.86926 6.95410 8.26533 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037213 B = 0.002399 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.238420 B =11666.570703 C =11708.256318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.368 6.368 4 C 0.060 3.940 5 H 0.127 0.873 6 C -0.133 4.133 7 C -0.187 4.187 8 H 0.145 0.855 9 C 0.490 3.510 10 O -0.541 6.541 11 O -0.356 6.356 12 C 0.140 3.860 13 C -0.232 4.232 14 C -0.066 4.066 15 C -0.246 4.246 16 C 0.087 3.913 17 C -0.493 4.493 18 H 0.080 0.920 19 C 0.035 3.965 20 N -0.818 5.818 21 Si 0.986 3.014 22 H -0.260 1.260 23 H -0.267 1.267 24 H -0.258 1.258 25 C -0.195 4.195 26 C -0.080 4.080 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.291 0.709 39 H 0.105 0.895 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 -10.749 8.949 19.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.287 6.287 4 C 0.001 3.999 5 H 0.145 0.855 6 C -0.170 4.170 7 C -0.207 4.207 8 H 0.162 0.838 9 C 0.335 3.665 10 O -0.432 6.432 11 O -0.273 6.273 12 C 0.068 3.932 13 C -0.233 4.233 14 C -0.084 4.084 15 C -0.265 4.265 16 C 0.085 3.915 17 C -0.521 4.521 18 H 0.098 0.902 19 C -0.182 4.182 20 N -0.443 5.443 21 Si 0.806 3.194 22 H -0.184 1.184 23 H -0.191 1.191 24 H -0.182 1.182 25 C -0.214 4.214 26 C -0.098 4.098 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.152 0.848 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.123 0.877 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.578 -10.904 9.021 19.612 hybrid contribution 0.800 0.553 -0.513 1.100 sum -12.778 -10.351 8.507 18.515 Atomic orbital electron populations 1.21782 0.92275 1.03690 1.02918 1.22847 0.96611 0.82031 1.01405 1.87820 1.17981 1.29017 1.93882 1.22684 0.82536 0.93929 1.00730 0.85529 1.23649 1.03678 1.00919 0.88723 1.22312 0.93711 1.06712 0.97943 0.83767 1.23028 0.86075 0.81735 0.75640 1.90599 1.65402 1.27695 1.59521 1.86668 1.37979 1.39527 1.63080 1.21586 0.81388 0.95249 0.94945 1.18973 1.08416 0.99874 0.96085 1.20710 0.97337 0.95950 0.94408 1.21168 1.08625 0.96998 0.99746 1.18060 0.89731 0.92172 0.91551 1.19904 1.07440 1.07206 1.17565 0.90165 1.26844 0.94501 1.04129 0.92685 1.69864 1.08267 1.38893 1.27242 0.85199 0.78394 0.76025 0.79810 1.18412 1.19078 1.18224 1.21285 1.05562 0.98594 0.95952 1.20780 0.96687 0.94205 0.98131 0.92425 0.88847 0.91730 0.92742 0.91460 0.86500 0.84791 0.90954 0.91217 0.86491 0.87855 0.89812 0.87658 0.87469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.67 6.53 71.98 0.47 1.14 16 3 O -0.37 -7.39 10.60 -148.98 -1.58 -8.97 16 4 C 0.06 1.21 5.95 30.59 0.18 1.40 16 5 H 0.13 2.53 7.46 -2.38 -0.02 2.51 16 6 C -0.13 -2.42 10.18 30.59 0.31 -2.11 16 7 C -0.19 -4.49 6.25 -11.54 -0.07 -4.56 16 8 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 9 C 0.49 15.40 7.74 71.24 0.55 15.96 16 10 O -0.54 -18.74 16.01 21.97 0.35 -18.38 16 11 O -0.36 -12.90 10.20 -51.41 -0.52 -13.42 16 12 C 0.14 5.25 5.58 71.24 0.40 5.65 16 13 C -0.23 -10.23 5.54 -19.67 -0.11 -10.34 16 14 C -0.07 -2.94 9.67 22.22 0.21 -2.73 16 15 C -0.25 -12.17 9.80 22.73 0.22 -11.95 16 16 C 0.09 4.75 5.58 -21.29 -0.12 4.63 16 17 C -0.49 -26.34 9.05 23.46 0.21 -26.13 16 18 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 19 C 0.03 1.72 5.14 85.25 0.44 2.16 16 20 N -0.82 -42.20 10.95 21.82 0.24 -41.96 16 21 Si 0.99 37.41 29.59 68.60 2.03 39.44 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -9.53 7.11 99.48 0.71 -8.83 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 C -0.19 -10.32 8.70 22.73 0.20 -10.12 16 26 C -0.08 -3.76 9.67 22.22 0.21 -3.54 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 2.54 8.07 -2.39 -0.02 2.52 16 35 H 0.07 2.49 8.07 -2.39 -0.02 2.48 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 38 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 39 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 40 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -62.14 349.60 5.40 -56.74 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 1.03 Total: 28.04 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 3.85 Total: -41.48 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.24 Total: -41.96 kcal Atomic # 8 Polarization: -39.02 SS G_CDS: -1.75 Total: -40.77 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -62.14 5.40 -56.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.023 kcal (2) G-P(sol) polarization free energy of solvation -62.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds