Wall clock time and date at job start Tue Mar 31 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.87092 * 2 1 4 4 O 1.43743 * 109.88095 * 121.15830 * 2 1 3 5 5 C 1.44376 * 106.97810 * 145.93943 * 4 2 1 6 6 C 1.54998 * 103.48936 * 319.93778 * 5 4 2 7 7 C 1.54103 * 109.87961 * 238.98931 * 2 1 3 8 8 H 1.09005 * 110.48305 * 119.73729 * 7 2 1 9 9 C 1.50699 * 110.48790 * 357.22457 * 7 2 1 10 10 O 1.20823 * 119.99653 * 273.07462 * 9 7 2 11 11 O 1.34230 * 120.00076 * 93.07107 * 9 7 2 12 12 C 1.45199 * 116.99596 * 180.02562 * 11 9 7 13 13 C 1.50709 * 109.46676 * 180.02562 * 12 11 9 14 14 C 1.38635 * 119.74901 * 90.00022 * 13 12 11 15 15 C 1.37609 * 120.25025 * 179.97438 * 14 13 12 16 16 C 1.40717 * 119.74362 * 0.02562 * 15 14 13 17 17 C 1.41401 * 120.24630 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99743 * 26.12840 * 17 16 15 19 19 C 1.39946 * 119.99766 * 206.13431 * 17 16 15 20 20 N 1.30821 * 120.00491 * 17.43233 * 19 17 16 21 21 Si 1.86798 * 119.99544 * 197.43252 * 19 17 16 22 22 H 1.48500 * 109.47229 * 265.02307 * 21 19 17 23 23 H 1.48506 * 109.47235 * 145.02474 * 21 19 17 24 24 H 1.48500 * 109.47564 * 25.02383 * 21 19 17 25 25 C 1.40720 * 119.51036 * 0.27131 * 16 15 14 26 26 C 1.37612 * 119.74557 * 359.44866 * 25 16 15 27 27 H 1.09000 * 109.47546 * 182.57453 * 1 2 3 28 28 H 1.09002 * 109.47239 * 302.57746 * 1 2 3 29 29 H 1.09000 * 109.47353 * 62.57380 * 1 2 3 30 30 H 1.08998 * 110.62336 * 78.44158 * 5 4 2 31 31 H 1.09000 * 110.61647 * 201.28503 * 5 4 2 32 32 H 1.08997 * 110.91164 * 278.82923 * 6 5 4 33 33 H 1.09003 * 110.90419 * 155.22204 * 6 5 4 34 34 H 1.09001 * 109.47236 * 60.00359 * 12 11 9 35 35 H 1.08999 * 109.47308 * 299.99704 * 12 11 9 36 36 H 1.08003 * 119.87157 * 359.95542 * 14 13 12 37 37 H 1.08001 * 120.13018 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00042 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.12368 * 179.72659 * 25 16 15 40 40 H 1.07992 * 119.87960 * 180.27447 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6994 1.1568 5 6 3.2379 -1.3651 0.7630 6 6 2.9195 -1.8906 -0.6600 7 6 2.0540 -0.7466 -1.2421 8 1 2.6600 -0.0828 -1.8587 9 6 0.9073 -1.3078 -2.0429 10 8 0.4590 -2.3971 -1.7743 11 8 0.3841 -0.5974 -3.0545 12 6 -0.7187 -1.2000 -3.7818 13 6 -1.1715 -0.2643 -4.8731 14 6 -0.5977 -0.3471 -6.1323 15 6 -1.0037 0.5018 -7.1364 16 6 -2.0051 1.4568 -6.8808 17 6 -2.4307 2.3340 -7.9049 18 1 -2.3370 2.0412 -8.9402 19 6 -2.9733 3.5816 -7.5769 20 7 -2.7831 4.0845 -6.3843 21 14 -3.9691 4.5287 -8.8420 22 1 -3.0862 5.4933 -9.5457 23 1 -5.0632 5.2657 -8.1600 24 1 -4.5497 3.5802 -9.8261 25 6 -2.5760 1.5359 -5.5971 26 6 -2.1586 0.6730 -4.6098 27 1 -0.3634 -1.0266 0.0462 28 1 -0.3634 0.5533 0.8660 29 1 -0.3634 0.4733 -0.9121 30 1 4.0685 -0.6598 0.7348 31 1 3.4599 -2.1908 1.4389 32 1 2.3539 -2.8212 -0.6135 33 1 3.8332 -2.0208 -1.2400 34 1 -1.5459 -1.3878 -3.0973 35 1 -0.3915 -2.1412 -4.2235 36 1 0.1712 -1.0804 -6.3259 37 1 -0.5550 0.4358 -8.1166 38 1 -3.1589 4.9494 -6.1571 39 1 -3.3421 2.2681 -5.3889 40 1 -2.5984 0.7289 -3.6251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776214394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:26 Heat of formation + Delta-G solvation = -124.396807 kcal Electronic energy + Delta-G solvation = -22568.890159 eV Core-core repulsion = 19119.932765 eV Total energy + Delta-G solvation = -3448.957395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.86872 -39.02572 -37.66433 -36.05812 -33.88774 -32.78950 -31.66982 -30.78662 -29.40749 -27.48101 -26.45330 -24.10845 -22.71560 -22.39011 -21.11868 -20.09375 -19.79211 -17.63049 -17.40734 -16.83648 -16.46004 -15.85608 -15.76236 -15.37016 -14.99802 -14.28827 -13.90627 -13.85496 -13.18803 -12.91026 -12.62559 -12.51038 -12.40061 -12.30819 -12.18893 -12.05079 -11.75534 -11.41860 -11.19754 -11.17928 -11.08611 -11.00757 -10.88290 -10.47575 -10.33329 -10.17483 -9.85040 -9.70461 -9.49646 -9.24831 -7.59088 -7.47218 -6.88531 -4.48791 2.34253 2.40498 2.91480 2.97751 3.01397 3.06539 3.31144 3.62048 3.84453 4.19822 4.45504 4.52027 4.77632 4.82956 4.98531 5.14197 5.20448 5.33130 5.42754 5.49718 5.58065 5.62690 5.65619 5.71302 5.85141 5.86502 6.03371 6.14450 6.21660 6.27998 6.66012 6.81192 6.85000 6.95781 7.14653 7.23072 7.49095 7.70556 7.93194 7.97089 8.02970 8.16743 8.51256 8.76237 8.83937 10.05889 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.003105 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.802045 B = 9016.961168 C = 9459.714204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.085 0.915 4 O -0.370 6.370 5 C 0.049 3.951 6 C -0.146 4.146 7 C -0.122 4.122 8 H 0.115 0.885 9 C 0.471 3.529 10 O -0.516 6.516 11 O -0.348 6.348 12 C 0.135 3.865 13 C -0.236 4.236 14 C -0.064 4.064 15 C -0.229 4.229 16 C 0.119 3.881 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.786 5.786 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.168 4.168 26 C -0.075 4.075 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.283 0.717 39 H 0.118 0.882 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.126 -5.187 9.520 13.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.035 3.965 3 H 0.103 0.897 4 O -0.289 6.289 5 C -0.027 4.027 6 C -0.184 4.184 7 C -0.141 4.141 8 H 0.134 0.866 9 C 0.314 3.686 10 O -0.405 6.405 11 O -0.264 6.264 12 C 0.064 3.936 13 C -0.237 4.237 14 C -0.082 4.082 15 C -0.248 4.248 16 C 0.117 3.883 17 C -0.486 4.486 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.410 5.410 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.188 4.188 26 C -0.094 4.094 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.798 -5.288 9.905 13.670 hybrid contribution -0.311 0.501 -0.795 0.990 sum 7.487 -4.787 9.110 12.726 Atomic orbital electron populations 1.22198 0.93246 1.03818 1.03609 1.22587 0.95814 0.95394 0.82718 0.89708 1.88915 1.39678 1.67663 1.32647 1.23543 0.87751 0.96550 0.94899 1.23237 0.99950 0.98891 0.96318 1.22555 0.94980 0.99536 0.97079 0.86640 1.23033 0.83169 0.83446 0.78916 1.90612 1.60719 1.21705 1.67496 1.86743 1.48484 1.48992 1.42219 1.21747 0.85488 0.94883 0.91531 1.18682 1.06147 1.05614 0.93276 1.20391 0.97281 0.97501 0.93074 1.20975 1.02672 1.02871 0.98327 1.17686 0.88064 0.89930 0.92651 1.19667 1.35075 0.99248 0.94636 0.90168 1.25959 0.94383 0.97894 0.96118 1.69822 1.33877 1.16637 1.20688 0.86282 0.79781 0.79580 0.81043 1.19466 1.19915 1.18323 1.21254 1.02969 1.00544 0.94004 1.20526 0.96666 0.94775 0.97438 0.91169 0.91079 0.90098 0.91801 0.88531 0.88424 0.89399 0.92003 0.92110 0.89332 0.88698 0.90637 0.86409 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.41 37.15 0.31 -1.95 16 2 C 0.09 1.12 4.05 -26.16 -0.11 1.01 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 O -0.37 -4.60 11.19 -35.23 -0.39 -5.00 16 5 C 0.05 0.45 7.72 38.21 0.29 0.74 16 6 C -0.15 -1.48 6.65 -24.72 -0.16 -1.65 16 7 C -0.12 -1.48 3.55 -90.24 -0.32 -1.80 16 8 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 9 C 0.47 7.48 4.87 36.00 0.18 7.65 16 10 O -0.52 -9.18 14.78 -18.75 -0.28 -9.46 16 11 O -0.35 -6.28 9.76 -39.26 -0.38 -6.67 16 12 C 0.14 2.54 5.58 36.01 0.20 2.74 16 13 C -0.24 -5.13 5.54 -104.32 -0.58 -5.71 16 14 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 15 C -0.23 -5.49 9.80 -38.88 -0.38 -5.87 16 16 C 0.12 3.10 5.56 -106.82 -0.59 2.50 16 17 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 18 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 19 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.79 -19.68 11.03 55.55 0.61 -19.06 16 21 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 25 C -0.17 -4.26 8.69 -38.87 -0.34 -4.60 16 26 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 27 H 0.07 1.03 7.04 -51.93 -0.37 0.66 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.14 7.18 -51.93 -0.37 0.76 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.16 6.89 -51.93 -0.36 0.80 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.12 3.06 6.25 -52.49 -0.33 2.73 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -28.44 334.34 -8.75 -37.19 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.62 Total: 6.18 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.69 Total: -21.18 kcal Atomic # 7 Polarization: -19.68 SS G_CDS: 0.61 Total: -19.06 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.05 Total: -21.12 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.44 -8.75 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.207 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds