Wall clock time and date at job start Tue Mar 31 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.87092 * 2 1 4 4 O 1.43743 * 109.88095 * 121.15830 * 2 1 3 5 5 C 1.44376 * 106.97810 * 145.93943 * 4 2 1 6 6 C 1.54998 * 103.48936 * 319.93778 * 5 4 2 7 7 C 1.54103 * 109.87961 * 238.98931 * 2 1 3 8 8 H 1.09005 * 110.48305 * 119.73729 * 7 2 1 9 9 C 1.50699 * 110.48790 * 357.22457 * 7 2 1 10 10 O 1.20823 * 119.99653 * 273.07462 * 9 7 2 11 11 O 1.34230 * 120.00076 * 93.07107 * 9 7 2 12 12 C 1.45199 * 116.99596 * 180.02562 * 11 9 7 13 13 C 1.50709 * 109.46676 * 180.02562 * 12 11 9 14 14 C 1.38635 * 119.74901 * 90.00022 * 13 12 11 15 15 C 1.37609 * 120.25025 * 179.97438 * 14 13 12 16 16 C 1.40717 * 119.74362 * 0.02562 * 15 14 13 17 17 C 1.41401 * 120.24630 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99743 * 26.12840 * 17 16 15 19 19 C 1.39946 * 119.99766 * 206.13431 * 17 16 15 20 20 N 1.30821 * 120.00491 * 17.43233 * 19 17 16 21 21 Si 1.86798 * 119.99544 * 197.43252 * 19 17 16 22 22 H 1.48500 * 109.47229 * 265.02307 * 21 19 17 23 23 H 1.48506 * 109.47235 * 145.02474 * 21 19 17 24 24 H 1.48500 * 109.47564 * 25.02383 * 21 19 17 25 25 C 1.40720 * 119.51036 * 0.27131 * 16 15 14 26 26 C 1.37612 * 119.74557 * 359.44866 * 25 16 15 27 27 H 1.09000 * 109.47546 * 182.57453 * 1 2 3 28 28 H 1.09002 * 109.47239 * 302.57746 * 1 2 3 29 29 H 1.09000 * 109.47353 * 62.57380 * 1 2 3 30 30 H 1.08998 * 110.62336 * 78.44158 * 5 4 2 31 31 H 1.09000 * 110.61647 * 201.28503 * 5 4 2 32 32 H 1.08997 * 110.91164 * 278.82923 * 6 5 4 33 33 H 1.09003 * 110.90419 * 155.22204 * 6 5 4 34 34 H 1.09001 * 109.47236 * 60.00359 * 12 11 9 35 35 H 1.08999 * 109.47308 * 299.99704 * 12 11 9 36 36 H 1.08003 * 119.87157 * 359.95542 * 14 13 12 37 37 H 1.08001 * 120.13018 * 179.97438 * 15 14 13 38 38 H 0.97000 * 120.00042 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.12368 * 179.72659 * 25 16 15 40 40 H 1.07992 * 119.87960 * 180.27447 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0188 -0.6994 1.1568 5 6 3.2379 -1.3651 0.7630 6 6 2.9195 -1.8906 -0.6600 7 6 2.0540 -0.7466 -1.2421 8 1 2.6600 -0.0828 -1.8587 9 6 0.9073 -1.3078 -2.0429 10 8 0.4590 -2.3971 -1.7743 11 8 0.3841 -0.5974 -3.0545 12 6 -0.7187 -1.2000 -3.7818 13 6 -1.1715 -0.2643 -4.8731 14 6 -0.5977 -0.3471 -6.1323 15 6 -1.0037 0.5018 -7.1364 16 6 -2.0051 1.4568 -6.8808 17 6 -2.4307 2.3340 -7.9049 18 1 -2.3370 2.0412 -8.9402 19 6 -2.9733 3.5816 -7.5769 20 7 -2.7831 4.0845 -6.3843 21 14 -3.9691 4.5287 -8.8420 22 1 -3.0862 5.4933 -9.5457 23 1 -5.0632 5.2657 -8.1600 24 1 -4.5497 3.5802 -9.8261 25 6 -2.5760 1.5359 -5.5971 26 6 -2.1586 0.6730 -4.6098 27 1 -0.3634 -1.0266 0.0462 28 1 -0.3634 0.5533 0.8660 29 1 -0.3634 0.4733 -0.9121 30 1 4.0685 -0.6598 0.7348 31 1 3.4599 -2.1908 1.4389 32 1 2.3539 -2.8212 -0.6135 33 1 3.8332 -2.0208 -1.2400 34 1 -1.5459 -1.3878 -3.0973 35 1 -0.3915 -2.1412 -4.2235 36 1 0.1712 -1.0804 -6.3259 37 1 -0.5550 0.4358 -8.1166 38 1 -3.1589 4.9494 -6.1571 39 1 -3.3421 2.2681 -5.3889 40 1 -2.5984 0.7289 -3.6251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776214394.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:26 Heat of formation + Delta-G solvation = -138.523221 kcal Electronic energy + Delta-G solvation = -22569.502727 eV Core-core repulsion = 19119.932765 eV Total energy + Delta-G solvation = -3449.569962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.03954 -40.14873 -39.38583 -37.48210 -35.68310 -33.79167 -32.56302 -32.51016 -31.24934 -29.09668 -27.53352 -25.70895 -23.94887 -23.20250 -22.96182 -21.86541 -20.94579 -19.27386 -18.80527 -17.92293 -17.72995 -17.20397 -16.94311 -16.67321 -16.18536 -15.76445 -15.53693 -15.45029 -14.44737 -14.34254 -13.96146 -13.85598 -13.76203 -13.62410 -13.45370 -13.39674 -13.19069 -12.84629 -12.70375 -12.60978 -12.32274 -12.12503 -12.07384 -11.93939 -11.68838 -11.64599 -11.41388 -11.29825 -11.04827 -10.70292 -9.44593 -9.33453 -8.69081 -6.40379 0.71959 1.09136 1.10712 1.38245 1.42435 1.53708 1.87719 2.19545 2.70443 2.79738 3.30196 3.51333 3.66421 3.82817 4.00582 4.06837 4.08734 4.14879 4.21280 4.24571 4.45490 4.47861 4.53043 4.53435 4.54756 4.81152 4.85458 4.89283 4.99440 5.06604 5.06787 5.11696 5.28465 5.37817 5.49229 5.64390 5.83869 5.86955 6.04734 6.12574 6.31231 6.63401 6.71972 6.88012 6.96051 8.28187 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.003105 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.802045 B = 9016.961168 C = 9459.714204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.107 0.893 4 O -0.391 6.391 5 C 0.047 3.953 6 C -0.143 4.143 7 C -0.122 4.122 8 H 0.138 0.862 9 C 0.472 3.528 10 O -0.538 6.538 11 O -0.358 6.358 12 C 0.140 3.860 13 C -0.230 4.230 14 C -0.065 4.065 15 C -0.243 4.243 16 C 0.089 3.911 17 C -0.494 4.494 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.819 5.819 21 Si 0.983 3.017 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.258 1.258 25 C -0.191 4.191 26 C -0.080 4.080 27 H 0.048 0.952 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.290 0.710 39 H 0.102 0.898 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.617 -5.244 10.078 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 H 0.124 0.876 4 O -0.311 6.311 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.141 4.141 8 H 0.156 0.844 9 C 0.316 3.684 10 O -0.428 6.428 11 O -0.275 6.275 12 C 0.068 3.932 13 C -0.231 4.231 14 C -0.084 4.084 15 C -0.263 4.263 16 C 0.086 3.914 17 C -0.523 4.523 18 H 0.098 0.902 19 C -0.180 4.180 20 N -0.444 5.444 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.190 1.190 24 H -0.182 1.182 25 C -0.210 4.210 26 C -0.098 4.098 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.309 -5.360 10.479 15.007 hybrid contribution -0.689 0.386 -0.830 1.146 sum 8.620 -4.974 9.649 13.862 Atomic orbital electron populations 1.22160 0.94721 1.02422 1.03480 1.22655 0.94763 0.96471 0.82638 0.87553 1.88892 1.41243 1.68087 1.32868 1.23792 0.87224 0.97470 0.94336 1.23271 1.00302 0.97074 0.97386 1.22761 0.93798 1.00712 0.96815 0.84429 1.23767 0.83472 0.83001 0.78127 1.90606 1.61571 1.22783 1.67853 1.86705 1.48217 1.49480 1.43120 1.21561 0.86260 0.94304 0.91058 1.18988 1.05023 1.04843 0.94222 1.20707 0.97542 0.97468 0.92636 1.21185 1.02578 1.03139 0.99369 1.18039 0.89087 0.91027 0.93223 1.19917 1.37283 1.00453 0.94661 0.90227 1.26798 0.94730 0.98326 0.98166 1.69867 1.34674 1.17392 1.22455 0.85176 0.78190 0.78024 0.78261 1.18623 1.19015 1.18205 1.21219 1.03572 1.01451 0.94778 1.20756 0.96892 0.94494 0.97698 0.93256 0.89983 0.91336 0.89211 0.87062 0.90580 0.86671 0.91563 0.90938 0.86412 0.87883 0.89887 0.87993 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 8.41 71.98 0.61 -3.76 16 2 C 0.09 2.03 4.05 30.97 0.13 2.16 16 3 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 4 O -0.39 -8.85 11.19 -148.98 -1.67 -10.52 16 5 C 0.05 0.71 7.72 72.67 0.56 1.27 16 6 C -0.14 -2.50 6.65 31.90 0.21 -2.29 16 7 C -0.12 -2.65 3.55 -10.55 -0.04 -2.69 16 8 H 0.14 2.40 8.14 -2.38 -0.02 2.39 16 9 C 0.47 14.31 4.87 71.24 0.35 14.65 16 10 O -0.54 -18.70 14.78 21.97 0.32 -18.38 16 11 O -0.36 -12.44 9.76 -51.42 -0.50 -12.94 16 12 C 0.14 5.10 5.58 71.24 0.40 5.50 16 13 C -0.23 -9.82 5.54 -19.67 -0.11 -9.93 16 14 C -0.07 -2.83 9.67 22.22 0.21 -2.62 16 15 C -0.24 -11.76 9.80 22.73 0.22 -11.54 16 16 C 0.09 4.73 5.56 -21.29 -0.12 4.62 16 17 C -0.49 -26.14 9.05 23.46 0.21 -25.93 16 18 H 0.08 4.04 7.90 -2.91 -0.02 4.01 16 19 C 0.04 1.76 5.14 85.26 0.44 2.20 16 20 N -0.82 -41.96 11.03 21.83 0.24 -41.72 16 21 Si 0.98 37.12 29.59 68.60 2.03 39.15 16 22 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 24 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 25 C -0.19 -9.94 8.69 22.73 0.20 -9.75 16 26 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 27 H 0.05 1.44 7.04 -2.39 -0.02 1.43 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.90 7.18 -2.39 -0.02 1.88 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.69 6.89 -2.39 -0.02 1.67 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 2.33 8.07 -2.39 -0.02 2.32 16 35 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 36 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 39 H 0.10 5.54 6.25 -2.91 -0.02 5.52 16 40 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -62.58 334.34 4.95 -57.64 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 1.03 Total: 28.36 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 3.48 Total: -41.59 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.24 Total: -41.72 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -1.84 Total: -41.84 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -62.58 4.95 -57.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214394.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.888 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds