Wall clock time and date at job start Tue Mar 31 2020 06:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99696 * 2 1 4 4 O 1.43748 * 109.88171 * 238.91536 * 2 1 3 5 5 C 1.44371 * 106.97802 * 214.06532 * 4 2 1 6 6 C 1.54996 * 103.49299 * 40.05864 * 5 4 2 7 7 C 1.54102 * 109.87948 * 121.08342 * 2 1 3 8 8 H 1.09002 * 110.49263 * 240.12868 * 7 2 1 9 9 C 1.50700 * 110.48592 * 2.77747 * 7 2 1 10 10 O 1.20822 * 120.00066 * 87.25583 * 9 7 2 11 11 O 1.34228 * 119.99788 * 267.25690 * 9 7 2 12 12 C 1.45201 * 116.99884 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47141 * 179.97438 * 12 11 9 14 14 C 1.38636 * 119.74827 * 269.72728 * 13 12 11 15 15 C 1.37620 * 120.24334 * 179.76736 * 14 13 12 16 16 C 1.40717 * 119.74719 * 0.52550 * 15 14 13 17 17 C 1.41399 * 120.24268 * 179.74924 * 16 15 14 18 18 H 1.07997 * 119.99363 * 152.70226 * 17 16 15 19 19 C 1.39944 * 120.00111 * 332.69884 * 17 16 15 20 20 N 1.30817 * 119.99645 * 162.50231 * 19 17 16 21 21 Si 1.86796 * 120.00034 * 342.50210 * 19 17 16 22 22 H 1.48505 * 109.47011 * 95.24033 * 21 19 17 23 23 H 1.48500 * 109.47472 * 215.24094 * 21 19 17 24 24 H 1.48496 * 109.47316 * 335.24453 * 21 19 17 25 25 C 1.40709 * 119.50863 * 359.72849 * 16 15 14 26 26 C 1.37616 * 119.75045 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.46792 * 296.54957 * 1 2 3 28 28 H 1.08997 * 109.46993 * 56.54512 * 1 2 3 29 29 H 1.08989 * 109.47424 * 176.54790 * 1 2 3 30 30 H 1.09002 * 110.62214 * 281.55754 * 5 4 2 31 31 H 1.09000 * 110.75452 * 158.62024 * 5 4 2 32 32 H 1.08999 * 110.90808 * 204.78008 * 6 5 4 33 33 H 1.08992 * 110.91182 * 81.17343 * 6 5 4 34 34 H 1.08996 * 109.47415 * 300.00321 * 12 11 9 35 35 H 1.09011 * 109.46972 * 60.00224 * 12 11 9 36 36 H 1.07999 * 119.87955 * 359.97438 * 14 13 12 37 37 H 1.08007 * 120.12580 * 180.23345 * 15 14 13 38 38 H 0.97006 * 119.99615 * 179.97438 * 20 19 17 39 39 H 1.08009 * 120.12689 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.88022 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7647 6 6 2.9195 -1.8915 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6620 -0.0859 1.8575 9 6 0.9073 -1.3104 2.0412 10 8 0.4629 -2.4019 1.7751 11 8 0.3798 -0.5985 3.0494 12 6 -0.7228 -1.2021 3.7763 13 6 -1.1808 -0.2644 4.8636 14 6 -0.6134 -0.3454 6.1259 15 6 -1.0206 0.5089 7.1250 16 6 -2.0247 1.4598 6.8644 17 6 -2.4548 2.3392 7.8848 18 1 -2.8588 3.3073 7.6282 19 6 -2.3570 1.9550 9.2269 20 7 -2.4218 2.8573 10.1718 21 14 -2.1338 0.1538 9.6689 22 1 -0.6890 -0.1350 9.8545 23 1 -2.8633 -0.1409 10.9283 24 1 -2.6716 -0.6946 8.5752 25 6 -2.5971 1.5292 5.5809 26 6 -2.1709 0.6683 4.5956 27 1 -0.3633 0.4594 0.9193 28 1 -0.3633 0.5665 -0.8574 29 1 -0.3634 -1.0257 -0.0619 30 1 4.0685 -0.6590 -0.7356 31 1 3.4611 -2.1907 -1.4394 32 1 3.8331 -2.0225 1.2374 33 1 2.3539 -2.8220 0.6099 34 1 -1.5479 -1.3946 3.0906 35 1 -0.3937 -2.1411 4.2216 36 1 0.1534 -1.0794 6.3250 37 1 -0.5746 0.4466 8.1067 38 1 -2.3544 2.5909 11.1022 39 1 -3.3688 2.2550 5.3701 40 1 -2.6085 0.7201 3.6096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776214395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:29 Heat of formation + Delta-G solvation = -121.808030 kcal Electronic energy + Delta-G solvation = -22614.863922 eV Core-core repulsion = 19166.018785 eV Total energy + Delta-G solvation = -3448.845137 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96266 -39.12698 -37.94662 -36.18308 -33.87191 -32.87842 -31.74697 -31.33223 -29.84006 -27.71709 -26.54161 -24.01007 -22.73043 -22.45990 -21.67907 -20.20463 -19.89015 -17.71981 -17.55616 -16.92906 -16.62918 -16.01397 -15.81638 -15.65144 -15.03906 -14.34265 -14.12560 -13.94493 -13.39596 -13.00980 -12.88481 -12.65647 -12.55771 -12.44234 -12.39456 -12.25217 -11.87942 -11.66507 -11.48733 -11.25149 -11.15134 -10.90999 -10.71543 -10.47963 -10.40260 -10.22765 -9.96744 -9.86931 -9.65230 -9.24295 -7.83358 -7.72480 -7.09985 -4.63110 2.19945 2.24696 2.61183 2.93534 3.07257 3.17349 3.25639 3.54649 3.87526 4.11794 4.33004 4.42874 4.69745 4.76028 4.91498 5.04433 5.11598 5.25348 5.33178 5.36398 5.43445 5.47845 5.50078 5.61726 5.76168 5.80059 5.88484 5.97582 6.01956 6.04694 6.43975 6.58949 6.68782 6.72666 6.77544 7.03945 7.30200 7.43697 7.66130 7.74601 7.91866 7.99526 8.21062 8.52258 8.65600 9.91315 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.003196 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.122136 B = 8758.529361 C = 9027.480971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.085 0.915 4 O -0.370 6.370 5 C 0.049 3.951 6 C -0.147 4.147 7 C -0.122 4.122 8 H 0.116 0.884 9 C 0.472 3.528 10 O -0.514 6.514 11 O -0.349 6.349 12 C 0.135 3.865 13 C -0.240 4.240 14 C -0.047 4.047 15 C -0.246 4.246 16 C 0.100 3.900 17 C -0.436 4.436 18 H 0.093 0.907 19 C 0.082 3.918 20 N -0.799 5.799 21 Si 0.917 3.083 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.242 1.242 25 C -0.214 4.214 26 C -0.054 4.054 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.288 0.712 39 H 0.103 0.897 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 -6.507 -14.242 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.035 3.965 3 H 0.103 0.897 4 O -0.289 6.289 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.141 4.141 8 H 0.134 0.866 9 C 0.315 3.685 10 O -0.403 6.403 11 O -0.266 6.266 12 C 0.063 3.937 13 C -0.241 4.241 14 C -0.066 4.066 15 C -0.265 4.265 16 C 0.096 3.904 17 C -0.464 4.464 18 H 0.111 0.889 19 C -0.139 4.139 20 N -0.422 5.422 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.219 1.219 24 H -0.165 1.165 25 C -0.234 4.234 26 C -0.073 4.073 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.739 -6.687 -14.212 17.974 hybrid contribution 0.205 -0.692 0.745 1.038 sum 8.944 -7.380 -13.467 17.771 Atomic orbital electron populations 1.22193 0.93263 1.03839 1.03546 1.22593 0.95784 0.95409 0.82732 0.89704 1.88916 1.39710 1.67702 1.32555 1.23542 0.87729 0.96566 0.94906 1.23248 0.99978 0.98885 0.96348 1.22559 0.94917 0.99581 0.97082 0.86609 1.23035 0.83165 0.83502 0.78825 1.90622 1.60817 1.21539 1.67330 1.86721 1.48401 1.48887 1.42551 1.21716 0.85665 0.94829 0.91519 1.18656 1.06093 1.05983 0.93416 1.20446 0.96636 0.96666 0.92828 1.20974 1.03545 1.03284 0.98682 1.17783 0.89293 0.90271 0.93025 1.19627 1.34612 1.02710 0.89420 0.88919 1.26257 0.90804 1.00619 0.96173 1.69684 1.34068 1.36311 1.02165 0.86241 0.78811 0.82478 0.78115 1.19612 1.21868 1.16520 1.20954 1.04245 1.03522 0.94652 1.20483 0.95445 0.94198 0.97126 0.90163 0.91050 0.91156 0.91764 0.88486 0.89362 0.88407 0.91776 0.91910 0.88810 0.88106 0.90157 0.87918 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 8.41 37.16 0.31 -1.73 16 2 C 0.09 1.02 4.05 -26.16 -0.11 0.91 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 4 O -0.37 -4.30 11.19 -35.23 -0.39 -4.70 16 5 C 0.05 0.41 7.72 38.21 0.29 0.71 16 6 C -0.15 -1.38 6.65 -24.72 -0.16 -1.55 16 7 C -0.12 -1.36 3.55 -90.24 -0.32 -1.68 16 8 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 9 C 0.47 6.96 4.87 36.01 0.18 7.14 16 10 O -0.51 -8.66 14.81 -18.75 -0.28 -8.94 16 11 O -0.35 -5.80 9.72 -39.25 -0.38 -6.18 16 12 C 0.13 2.35 5.58 36.01 0.20 2.55 16 13 C -0.24 -4.86 5.54 -104.33 -0.58 -5.44 16 14 C -0.05 -1.01 9.67 -39.66 -0.38 -1.39 16 15 C -0.25 -5.79 7.11 -38.87 -0.28 -6.07 16 16 C 0.10 2.46 5.18 -106.82 -0.55 1.90 16 17 C -0.44 -11.43 9.59 -37.74 -0.36 -11.80 16 18 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 19 C 0.08 2.08 5.43 -17.35 -0.09 1.99 16 20 N -0.80 -20.62 13.93 55.55 0.77 -19.85 16 21 Si 0.92 20.27 24.43 -169.99 -4.15 16.12 16 22 H -0.27 -5.79 6.68 56.52 0.38 -5.41 16 23 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.24 -5.48 6.74 56.52 0.38 -5.10 16 25 C -0.21 -4.84 9.80 -38.88 -0.38 -5.22 16 26 C -0.05 -1.11 9.67 -39.66 -0.38 -1.49 16 27 H 0.08 1.00 7.11 -51.93 -0.37 0.64 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.95 7.11 -51.94 -0.37 0.58 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.10 6.89 -51.93 -0.36 0.74 16 34 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 35 H 0.06 1.06 8.07 -51.92 -0.42 0.64 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.10 2.36 4.33 -52.48 -0.23 2.13 16 38 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 39 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -28.37 328.36 -7.67 -36.04 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.57 Total: 3.72 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -2.62 Total: -21.16 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.77 Total: -19.85 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -1.05 Total: -19.81 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.15 Total: 16.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.37 -7.67 -36.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.770 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds