Wall clock time and date at job start Tue Mar 31 2020 06:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99696 * 2 1 4 4 O 1.43748 * 109.88171 * 238.91536 * 2 1 3 5 5 C 1.44371 * 106.97802 * 214.06532 * 4 2 1 6 6 C 1.54996 * 103.49299 * 40.05864 * 5 4 2 7 7 C 1.54102 * 109.87948 * 121.08342 * 2 1 3 8 8 H 1.09002 * 110.49263 * 240.12868 * 7 2 1 9 9 C 1.50700 * 110.48592 * 2.77747 * 7 2 1 10 10 O 1.20822 * 120.00066 * 87.25583 * 9 7 2 11 11 O 1.34228 * 119.99788 * 267.25690 * 9 7 2 12 12 C 1.45201 * 116.99884 * 179.97438 * 11 9 7 13 13 C 1.50701 * 109.47141 * 179.97438 * 12 11 9 14 14 C 1.38636 * 119.74827 * 269.72728 * 13 12 11 15 15 C 1.37620 * 120.24334 * 179.76736 * 14 13 12 16 16 C 1.40717 * 119.74719 * 0.52550 * 15 14 13 17 17 C 1.41399 * 120.24268 * 179.74924 * 16 15 14 18 18 H 1.07997 * 119.99363 * 152.70226 * 17 16 15 19 19 C 1.39944 * 120.00111 * 332.69884 * 17 16 15 20 20 N 1.30817 * 119.99645 * 162.50231 * 19 17 16 21 21 Si 1.86796 * 120.00034 * 342.50210 * 19 17 16 22 22 H 1.48505 * 109.47011 * 95.24033 * 21 19 17 23 23 H 1.48500 * 109.47472 * 215.24094 * 21 19 17 24 24 H 1.48496 * 109.47316 * 335.24453 * 21 19 17 25 25 C 1.40709 * 119.50863 * 359.72849 * 16 15 14 26 26 C 1.37616 * 119.75045 * 0.02562 * 25 16 15 27 27 H 1.09001 * 109.46792 * 296.54957 * 1 2 3 28 28 H 1.08997 * 109.46993 * 56.54512 * 1 2 3 29 29 H 1.08989 * 109.47424 * 176.54790 * 1 2 3 30 30 H 1.09002 * 110.62214 * 281.55754 * 5 4 2 31 31 H 1.09000 * 110.75452 * 158.62024 * 5 4 2 32 32 H 1.08999 * 110.90808 * 204.78008 * 6 5 4 33 33 H 1.08992 * 110.91182 * 81.17343 * 6 5 4 34 34 H 1.08996 * 109.47415 * 300.00321 * 12 11 9 35 35 H 1.09011 * 109.46972 * 60.00224 * 12 11 9 36 36 H 1.07999 * 119.87955 * 359.97438 * 14 13 12 37 37 H 1.08007 * 120.12580 * 180.23345 * 15 14 13 38 38 H 0.97006 * 119.99615 * 179.97438 * 20 19 17 39 39 H 1.08009 * 120.12689 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.88022 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6979 -1.1577 5 6 3.2379 -1.3642 -0.7647 6 6 2.9195 -1.8915 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6620 -0.0859 1.8575 9 6 0.9073 -1.3104 2.0412 10 8 0.4629 -2.4019 1.7751 11 8 0.3798 -0.5985 3.0494 12 6 -0.7228 -1.2021 3.7763 13 6 -1.1808 -0.2644 4.8636 14 6 -0.6134 -0.3454 6.1259 15 6 -1.0206 0.5089 7.1250 16 6 -2.0247 1.4598 6.8644 17 6 -2.4548 2.3392 7.8848 18 1 -2.8588 3.3073 7.6282 19 6 -2.3570 1.9550 9.2269 20 7 -2.4218 2.8573 10.1718 21 14 -2.1338 0.1538 9.6689 22 1 -0.6890 -0.1350 9.8545 23 1 -2.8633 -0.1409 10.9283 24 1 -2.6716 -0.6946 8.5752 25 6 -2.5971 1.5292 5.5809 26 6 -2.1709 0.6683 4.5956 27 1 -0.3633 0.4594 0.9193 28 1 -0.3633 0.5665 -0.8574 29 1 -0.3634 -1.0257 -0.0619 30 1 4.0685 -0.6590 -0.7356 31 1 3.4611 -2.1907 -1.4394 32 1 3.8331 -2.0225 1.2374 33 1 2.3539 -2.8220 0.6099 34 1 -1.5479 -1.3946 3.0906 35 1 -0.3937 -2.1411 4.2216 36 1 0.1534 -1.0794 6.3250 37 1 -0.5746 0.4466 8.1067 38 1 -2.3544 2.5909 11.1022 39 1 -3.3688 2.2550 5.3701 40 1 -2.6085 0.7201 3.6096 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776214395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:28 Heat of formation + Delta-G solvation = -137.322719 kcal Electronic energy + Delta-G solvation = -22615.536689 eV Core-core repulsion = 19166.018785 eV Total energy + Delta-G solvation = -3449.517904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04056 -40.19477 -39.56694 -37.49955 -35.68093 -33.82025 -33.02226 -32.52174 -31.58449 -29.26411 -27.51492 -25.53703 -23.92222 -23.40827 -23.19407 -21.92595 -20.94544 -19.41599 -18.80538 -17.99608 -17.86939 -17.32064 -16.96602 -16.68993 -16.20733 -15.81533 -15.66042 -15.57023 -14.78975 -14.28447 -14.24917 -14.13163 -13.74760 -13.68692 -13.49129 -13.38679 -13.31561 -13.12714 -12.71791 -12.47452 -12.28763 -12.07750 -12.05381 -11.96182 -11.76139 -11.67093 -11.53418 -11.39994 -11.01391 -10.69295 -9.58448 -9.51098 -8.96965 -6.56866 0.54371 0.84419 1.10654 1.23665 1.36765 1.47116 1.79199 2.08894 2.57420 2.80560 3.29805 3.44486 3.56965 3.80218 4.00775 4.01004 4.03351 4.15021 4.22464 4.26002 4.33432 4.39914 4.46600 4.53381 4.56779 4.68787 4.81689 4.86763 4.90967 4.96954 5.01306 5.07066 5.09533 5.24816 5.46254 5.54262 5.68295 5.84715 5.85173 5.94761 6.18215 6.33569 6.66907 6.72049 6.76694 8.10665 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034899 B = 0.003196 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.122136 B = 8758.529361 C = 9027.480971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.108 0.892 4 O -0.392 6.392 5 C 0.047 3.953 6 C -0.144 4.144 7 C -0.121 4.121 8 H 0.139 0.861 9 C 0.473 3.527 10 O -0.537 6.537 11 O -0.356 6.356 12 C 0.137 3.863 13 C -0.222 4.222 14 C -0.054 4.054 15 C -0.258 4.258 16 C 0.081 3.919 17 C -0.476 4.476 18 H 0.060 0.940 19 C 0.047 3.953 20 N -0.841 5.841 21 Si 0.968 3.032 22 H -0.257 1.257 23 H -0.278 1.278 24 H -0.251 1.251 25 C -0.226 4.226 26 C -0.053 4.053 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.296 0.704 39 H 0.106 0.894 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 -8.246 -16.139 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.034 3.966 3 H 0.125 0.875 4 O -0.312 6.312 5 C -0.028 4.028 6 C -0.182 4.182 7 C -0.141 4.141 8 H 0.157 0.843 9 C 0.318 3.682 10 O -0.427 6.427 11 O -0.273 6.273 12 C 0.064 3.936 13 C -0.223 4.223 14 C -0.072 4.072 15 C -0.277 4.277 16 C 0.078 3.922 17 C -0.505 4.505 18 H 0.079 0.921 19 C -0.168 4.168 20 N -0.466 5.466 21 Si 0.792 3.208 22 H -0.183 1.183 23 H -0.205 1.205 24 H -0.175 1.175 25 C -0.245 4.245 26 C -0.071 4.071 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.107 0.893 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.125 0.875 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.768 -8.423 -16.121 21.137 hybrid contribution -0.362 -0.246 1.025 1.115 sum 10.406 -8.669 -15.096 20.280 Atomic orbital electron populations 1.22166 0.94485 1.02472 1.03649 1.22690 0.94947 0.96460 0.82517 0.87479 1.88894 1.41190 1.68147 1.32955 1.23773 0.87272 0.97424 0.94371 1.23277 1.00341 0.97195 0.97370 1.22757 0.93792 1.00620 0.96886 0.84312 1.23727 0.83412 0.83043 0.78062 1.90620 1.61670 1.22672 1.67743 1.86680 1.48101 1.49196 1.43310 1.21583 0.86627 0.94172 0.91185 1.19053 1.04520 1.04773 0.93941 1.20785 0.97111 0.96716 0.92606 1.21089 1.03445 1.03676 0.99446 1.17946 0.89980 0.90716 0.93513 1.19590 1.37562 1.02478 0.90890 0.92150 1.26885 0.90396 1.03861 0.95705 1.69707 1.36330 1.37809 1.02794 0.85460 0.79408 0.78070 0.77882 1.18289 1.20503 1.17485 1.21159 1.04508 1.04274 0.94561 1.20820 0.95154 0.93189 0.97965 0.90866 0.90019 0.93313 0.89264 0.87232 0.86805 0.90618 0.90767 0.90982 0.85997 0.88265 0.89312 0.87542 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.76 8.41 71.98 0.61 -3.16 16 2 C 0.09 1.75 4.05 30.97 0.13 1.88 16 3 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 4 O -0.39 -8.08 11.19 -148.98 -1.67 -9.75 16 5 C 0.05 0.64 7.72 72.67 0.56 1.20 16 6 C -0.14 -2.26 6.65 31.90 0.21 -2.05 16 7 C -0.12 -2.31 3.55 -10.55 -0.04 -2.35 16 8 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 9 C 0.47 12.75 4.87 71.24 0.35 13.10 16 10 O -0.54 -17.09 14.81 21.98 0.33 -16.76 16 11 O -0.36 -10.76 9.72 -51.39 -0.50 -11.26 16 12 C 0.14 4.33 5.58 71.24 0.40 4.73 16 13 C -0.22 -8.34 5.54 -19.67 -0.11 -8.45 16 14 C -0.05 -2.17 9.67 22.22 0.21 -1.95 16 15 C -0.26 -11.92 7.11 22.73 0.16 -11.75 16 16 C 0.08 4.06 5.18 -21.29 -0.11 3.95 16 17 C -0.48 -26.21 9.59 23.46 0.22 -25.99 16 18 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 19 C 0.05 2.49 5.43 85.26 0.46 2.95 16 20 N -0.84 -45.13 13.93 21.83 0.30 -44.83 16 21 Si 0.97 41.92 24.43 68.60 1.68 43.60 16 22 H -0.26 -10.50 6.68 99.48 0.67 -9.84 16 23 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.25 -11.10 6.74 99.48 0.67 -10.43 16 25 C -0.23 -10.14 9.80 22.73 0.22 -9.92 16 26 C -0.05 -2.06 9.67 22.22 0.21 -1.84 16 27 H 0.07 1.69 7.11 -2.39 -0.02 1.67 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.27 7.11 -2.39 -0.02 1.25 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.55 6.89 -2.39 -0.02 1.53 16 34 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 36 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 37 H 0.10 4.57 4.33 -2.91 -0.01 4.56 16 38 H 0.30 14.21 8.30 -92.70 -0.77 13.44 16 39 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -62.77 328.36 4.59 -58.17 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.96 Total: 20.48 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 3.49 Total: -39.65 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.30 Total: -44.83 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.84 Total: -37.77 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.68 Total: 43.60 kcal Total: -62.77 4.59 -58.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.150 kcal (2) G-P(sol) polarization free energy of solvation -62.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds