Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.82979 * 2 1 4 4 O 1.43239 * 109.82893 * 239.01798 * 2 1 3 5 5 C 1.43641 * 109.97613 * 242.20440 * 4 2 1 6 6 C 1.54950 * 105.13243 * 335.57098 * 5 4 2 7 7 C 1.54385 * 109.82772 * 120.88949 * 2 1 3 8 8 H 1.08996 * 110.84884 * 22.67932 * 7 2 1 9 9 C 1.50697 * 110.84569 * 259.05287 * 7 2 1 10 10 O 1.20830 * 120.00208 * 0.02562 * 9 7 2 11 11 O 1.34234 * 119.99819 * 179.97438 * 9 7 2 12 12 C 1.45193 * 116.99681 * 180.02562 * 11 9 7 13 13 C 1.50702 * 109.47110 * 180.02562 * 12 11 9 14 14 C 1.38634 * 119.74909 * 269.73446 * 13 12 11 15 15 C 1.37624 * 120.24742 * 179.72020 * 14 13 12 16 16 C 1.40707 * 119.74488 * 0.56249 * 15 14 13 17 17 C 1.41396 * 120.24525 * 179.68031 * 16 15 14 18 18 H 1.07996 * 120.00408 * 204.40555 * 17 16 15 19 19 C 1.39948 * 119.99830 * 24.41214 * 17 16 15 20 20 N 1.30825 * 119.99765 * 17.84498 * 19 17 16 21 21 Si 1.86798 * 119.99862 * 197.84323 * 19 17 16 22 22 H 1.48499 * 109.47027 * 90.00205 * 21 19 17 23 23 H 1.48499 * 109.46923 * 209.99593 * 21 19 17 24 24 H 1.48494 * 109.47336 * 329.99840 * 21 19 17 25 25 C 1.40721 * 119.51156 * 359.71040 * 16 15 14 26 26 C 1.37613 * 119.74573 * 359.97438 * 25 16 15 27 27 H 1.09008 * 109.46842 * 299.11301 * 1 2 3 28 28 H 1.09008 * 109.47350 * 59.10946 * 1 2 3 29 29 H 1.09003 * 109.47815 * 179.11126 * 1 2 3 30 30 H 1.09002 * 110.31145 * 216.66073 * 5 4 2 31 31 H 1.08993 * 110.39471 * 94.52612 * 5 4 2 32 32 H 1.09004 * 111.12682 * 278.52471 * 6 5 4 33 33 H 1.08999 * 111.16053 * 154.37997 * 6 5 4 34 34 H 1.08996 * 109.47859 * 300.00148 * 12 11 9 35 35 H 1.09007 * 109.47492 * 60.00643 * 12 11 9 36 36 H 1.08002 * 119.87379 * 359.96853 * 14 13 12 37 37 H 1.08004 * 120.12515 * 180.27405 * 15 14 13 38 38 H 0.97007 * 119.99809 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.12432 * 179.97438 * 25 16 15 40 40 H 1.07997 * 119.87563 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0253 0.0000 4 8 2.0158 -0.6936 -1.1552 5 6 2.7745 -1.8452 -0.7532 6 6 3.2729 -1.5218 0.6779 7 6 2.0536 -0.7456 1.2463 8 1 1.3011 -1.4336 1.6314 9 6 2.4871 0.2286 2.3112 10 8 2.3953 1.4175 2.1160 11 8 2.9743 -0.2245 3.4771 12 6 3.3716 0.7708 4.4567 13 6 3.8903 0.0807 5.6920 14 6 3.0163 -0.2394 6.7194 15 6 3.4779 -0.8748 7.8496 16 6 4.8446 -1.1887 7.9650 17 6 5.3315 -1.8353 9.1243 18 1 6.3691 -1.7315 9.4051 19 6 4.4687 -2.6100 9.9079 20 7 3.3321 -3.0272 9.4123 21 14 4.9400 -3.0483 11.6615 22 1 4.4371 -2.0005 12.5859 23 1 4.3388 -4.3572 12.0232 24 1 6.4184 -3.1358 11.7697 25 6 5.7236 -0.8539 6.9182 26 6 5.2388 -0.2246 5.7945 27 1 -0.3633 0.5000 0.8979 28 1 -0.3634 0.5276 -0.8819 29 1 -0.3635 -1.0275 -0.0159 30 1 3.6208 -1.9938 -1.4239 31 1 2.1412 -2.7322 -0.7418 32 1 4.1620 -0.8917 0.6513 33 1 3.4574 -2.4337 1.2458 34 1 4.1555 1.4012 4.0370 35 1 2.5112 1.3867 4.7185 36 1 1.9685 0.0071 6.6308 37 1 2.7945 -1.1272 8.6469 38 1 2.7342 -3.5644 9.9553 39 1 6.7746 -1.0898 6.9966 40 1 5.9113 0.0330 4.9898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776214397.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = -140.289947 kcal Electronic energy + Delta-G solvation = -22299.327315 eV Core-core repulsion = 18849.680743 eV Total energy + Delta-G solvation = -3449.646573 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.92958 -40.23999 -39.41816 -37.54722 -35.70216 -33.78517 -32.61403 -32.39818 -31.24505 -29.13533 -27.71219 -25.67354 -23.92227 -22.96544 -22.74995 -21.86274 -21.25674 -19.28284 -19.11746 -18.05469 -17.65085 -17.20099 -17.09429 -16.40210 -15.84549 -15.60128 -15.52290 -15.24445 -14.79992 -14.46306 -14.18085 -13.95355 -13.86052 -13.59654 -13.53896 -13.26579 -12.97554 -12.87241 -12.71420 -12.62237 -12.48928 -12.13748 -12.00943 -11.93641 -11.74704 -11.62253 -11.42394 -11.29573 -11.05698 -10.54926 -9.45445 -9.34888 -8.69883 -6.40980 0.70622 1.05471 1.09954 1.38111 1.42946 1.52009 1.82762 2.18941 2.66760 2.74403 3.29939 3.55100 3.60539 3.76378 3.97844 4.05631 4.07142 4.10563 4.19838 4.33208 4.45747 4.49250 4.53261 4.59213 4.66144 4.80607 4.87845 4.95826 4.99447 5.09101 5.10897 5.21233 5.28889 5.37720 5.43897 5.63700 5.86731 5.95756 6.04439 6.12736 6.30674 6.63140 6.64953 6.87410 6.95804 8.26664 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030373 B = 0.002904 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.640813 B = 9639.862717 C = 9743.708769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.089 3.911 3 H 0.080 0.920 4 O -0.391 6.391 5 C 0.051 3.949 6 C -0.142 4.142 7 C -0.117 4.117 8 H 0.141 0.859 9 C 0.469 3.531 10 O -0.537 6.537 11 O -0.356 6.356 12 C 0.140 3.860 13 C -0.232 4.232 14 C -0.080 4.080 15 C -0.193 4.193 16 C 0.088 3.912 17 C -0.493 4.493 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.817 5.817 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.245 4.245 26 C -0.064 4.064 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.291 0.709 39 H 0.103 0.897 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 0.143 -13.376 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.031 3.969 3 H 0.098 0.902 4 O -0.312 6.312 5 C -0.025 4.025 6 C -0.179 4.179 7 C -0.136 4.136 8 H 0.159 0.841 9 C 0.314 3.686 10 O -0.427 6.427 11 O -0.272 6.272 12 C 0.068 3.932 13 C -0.233 4.233 14 C -0.099 4.099 15 C -0.213 4.213 16 C 0.086 3.914 17 C -0.521 4.521 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.442 5.442 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.264 4.264 26 C -0.083 4.083 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.130 0.870 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.881 0.415 -13.556 14.107 hybrid contribution 0.183 -0.068 1.225 1.240 sum -3.699 0.347 -12.331 12.879 Atomic orbital electron populations 1.22116 0.92873 1.03575 1.02984 1.22632 0.95781 0.96123 0.82367 0.90226 1.88433 1.71450 1.41448 1.29822 1.23584 0.96022 0.88812 0.94054 1.23300 0.95875 1.01644 0.97117 1.22781 1.01587 0.96828 0.92383 0.84136 1.23724 0.73326 0.88915 0.82640 1.90620 1.52759 1.19143 1.80201 1.86687 1.72890 1.42475 1.25152 1.21604 0.99030 0.88010 0.84602 1.18978 0.94001 1.14327 0.95988 1.20777 0.97849 0.97282 0.93946 1.21267 0.96674 1.04350 0.98993 1.18040 0.92434 0.88845 0.92109 1.19941 0.97717 1.26789 1.07668 0.90221 1.26814 0.93896 0.93341 1.04008 1.69872 1.10224 1.25531 1.38554 0.85162 0.79875 0.78379 0.76091 1.18681 1.19147 1.18101 1.21174 0.99060 1.10391 0.95780 1.20700 0.94511 0.96345 0.96700 0.91471 0.91005 0.90671 0.87587 0.89711 0.90573 0.87004 0.90891 0.91265 0.87578 0.87767 0.89844 0.87916 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.44 71.98 0.68 -2.20 16 2 C 0.09 1.96 3.61 31.06 0.11 2.07 16 3 H 0.08 2.09 6.78 -2.39 -0.02 2.08 16 4 O -0.39 -8.56 11.02 -148.98 -1.64 -10.21 16 5 C 0.05 0.80 7.78 72.65 0.57 1.37 16 6 C -0.14 -2.62 6.60 32.05 0.21 -2.40 16 7 C -0.12 -2.57 3.03 -10.28 -0.03 -2.60 16 8 H 0.14 2.58 7.85 -2.39 -0.02 2.56 16 9 C 0.47 14.07 7.27 71.24 0.52 14.59 16 10 O -0.54 -18.37 15.17 21.95 0.33 -18.04 16 11 O -0.36 -12.21 10.20 -51.46 -0.53 -12.74 16 12 C 0.14 5.01 5.58 71.24 0.40 5.41 16 13 C -0.23 -9.84 5.54 -19.67 -0.11 -9.95 16 14 C -0.08 -3.68 9.67 22.22 0.21 -3.46 16 15 C -0.19 -10.03 8.70 22.73 0.20 -9.83 16 16 C 0.09 4.68 5.57 -21.29 -0.12 4.56 16 17 C -0.49 -25.89 9.05 23.46 0.21 -25.68 16 18 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 19 C 0.04 1.74 5.14 85.26 0.44 2.18 16 20 N -0.82 -41.53 10.95 21.83 0.24 -41.29 16 21 Si 0.98 36.86 29.60 68.60 2.03 38.89 16 22 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.27 -9.47 7.11 99.48 0.71 -8.77 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 C -0.24 -11.76 9.80 22.73 0.22 -11.54 16 26 C -0.06 -2.77 9.67 22.22 0.21 -2.56 16 27 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.53 8.03 -2.38 -0.02 1.51 16 33 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 35 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 36 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 38 H 0.29 13.28 8.30 -92.70 -0.77 12.51 16 39 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 40 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -60.92 338.89 5.19 -55.72 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 1.03 Total: 27.69 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.73 Total: -40.04 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.24 Total: -41.29 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.83 Total: -40.98 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -60.92 5.19 -55.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776214397.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.565 kcal (2) G-P(sol) polarization free energy of solvation -60.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds