Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47438 * 2 1 4 4 C 1.50694 * 109.47293 * 179.97438 * 3 2 1 5 5 O 1.20761 * 119.99999 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00225 * 179.97438 * 4 3 2 7 7 O 1.45194 * 109.47450 * 180.02562 * 6 4 3 8 8 C 1.34229 * 117.00124 * 179.97438 * 7 6 4 9 9 O 1.20816 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99826 * 179.97438 * 8 7 6 11 11 C 1.50704 * 109.46838 * 180.02562 * 10 8 7 12 12 C 1.37639 * 120.12180 * 264.99608 * 11 10 8 13 13 C 1.38610 * 120.24594 * 179.97438 * 12 11 10 14 14 C 1.38661 * 120.50527 * 0.02562 * 13 12 11 15 15 C 1.37593 * 120.24160 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.13207 * 84.72627 * 11 10 8 17 17 C 1.41398 * 120.24049 * 359.97438 * 16 11 10 18 18 H 1.08002 * 119.99937 * 329.69760 * 17 16 11 19 19 C 1.39938 * 119.99671 * 149.70751 * 17 16 11 20 20 N 1.30822 * 120.00022 * 162.01229 * 19 17 16 21 21 Si 1.86803 * 120.00276 * 342.00724 * 19 17 16 22 22 H 1.48502 * 109.46988 * 95.40559 * 21 19 17 23 23 H 1.48498 * 109.47138 * 215.40343 * 21 19 17 24 24 H 1.48497 * 109.46831 * 335.40536 * 21 19 17 25 25 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47453 * 300.00250 * 1 2 3 27 27 H 1.09005 * 109.46924 * 59.99991 * 1 2 3 28 28 H 1.08993 * 109.47001 * 239.99604 * 2 1 3 29 29 H 1.09005 * 109.46924 * 120.00009 * 2 1 3 30 30 H 1.09004 * 109.47003 * 59.99475 * 3 2 1 31 31 H 1.09005 * 109.47071 * 299.99919 * 3 2 1 32 32 H 1.08999 * 109.47246 * 59.99989 * 6 4 3 33 33 H 1.09011 * 109.47118 * 300.00213 * 6 4 3 34 34 H 1.09007 * 109.46987 * 299.99779 * 10 8 7 35 35 H 1.08993 * 109.47616 * 60.00405 * 10 8 7 36 36 H 1.08002 * 119.87932 * 0.02562 * 12 11 10 37 37 H 1.08006 * 119.75215 * 180.02562 * 13 12 11 38 38 H 1.07995 * 119.87621 * 180.02562 * 14 13 12 39 39 H 1.08006 * 120.12261 * 179.97438 * 15 14 13 40 40 H 0.97003 * 120.00475 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1508 0.3965 0.0006 6 6 4.3006 2.7475 0.0002 7 8 5.7281 2.4821 0.0003 8 6 6.5458 3.5466 -0.0006 9 8 6.0840 4.6631 -0.0010 10 6 8.0398 3.3491 0.0001 11 6 8.7240 4.6918 -0.0005 12 6 9.1305 5.2594 -1.1867 13 6 9.7596 6.4945 -1.1903 14 6 9.9871 7.1720 -0.0021 15 6 9.5902 6.6231 1.1956 16 6 8.9445 5.3727 1.2108 17 6 8.5256 4.8022 2.4349 18 1 7.6610 4.1555 2.4614 19 6 9.2312 5.0757 3.6120 20 7 8.6732 4.8570 4.7749 21 14 10.9698 5.7530 3.5230 22 1 10.9305 7.2334 3.6326 23 1 11.7760 5.1953 4.6384 24 1 11.5849 5.3687 2.2271 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 4.0369 3.3196 0.8897 33 1 4.0376 3.3186 -0.8903 34 1 8.3324 2.7930 0.8909 35 1 8.3330 2.7912 -0.8891 36 1 8.9580 4.7408 -2.1183 37 1 10.0749 6.9327 -2.1258 38 1 10.4778 8.1339 -0.0167 39 1 9.7687 7.1523 2.1200 40 1 9.1624 5.0462 5.5909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777162355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = -121.081646 kcal Electronic energy + Delta-G solvation = -22332.479833 eV Core-core repulsion = 18883.666195 eV Total energy + Delta-G solvation = -3448.813638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27168 -39.30419 -37.86766 -35.81484 -34.64991 -33.63062 -32.05101 -30.38666 -30.13874 -27.77199 -26.61889 -24.89826 -22.24931 -21.51396 -20.99944 -19.83930 -19.40329 -17.39803 -17.20179 -16.61539 -16.45297 -15.73189 -15.61147 -15.52830 -14.57202 -14.42583 -14.29463 -13.90467 -13.73167 -13.25887 -12.83857 -12.68694 -12.35970 -12.21676 -12.15544 -12.08846 -11.91273 -11.46280 -11.45409 -11.23186 -11.02308 -10.84679 -10.78147 -10.43637 -10.28374 -9.98567 -9.74629 -9.66930 -9.55043 -9.15422 -7.65980 -7.56806 -6.97023 -4.52818 1.81459 2.39952 2.67527 2.86787 2.96508 3.10813 3.21793 3.31223 3.96378 3.99615 4.49257 4.55742 4.70045 4.86088 5.09352 5.16244 5.25549 5.28238 5.31441 5.36767 5.49108 5.58367 5.77109 5.81479 5.86036 5.88658 6.02170 6.05148 6.15004 6.27886 6.52073 6.68058 6.81976 6.91483 7.16191 7.37319 7.39580 7.61346 7.70484 7.85441 8.09521 8.30021 8.38490 8.62852 8.77631 10.04949 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.003662 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.678950 B = 7644.782807 C = 8543.049717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.165 4.165 4 C 0.354 3.646 5 O -0.429 6.429 6 C 0.012 3.988 7 O -0.350 6.350 8 C 0.461 3.539 9 O -0.492 6.492 10 C -0.044 4.044 11 C -0.181 4.181 12 C -0.064 4.064 13 C -0.244 4.244 14 C -0.076 4.076 15 C -0.232 4.232 16 C 0.110 3.890 17 C -0.445 4.445 18 H 0.088 0.912 19 C 0.085 3.915 20 N -0.806 5.806 21 Si 0.911 3.089 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.243 1.243 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.928 -5.598 -7.381 13.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.202 4.202 4 C 0.227 3.773 5 O -0.300 6.300 6 C -0.063 4.063 7 O -0.267 6.267 8 C 0.303 3.697 9 O -0.377 6.377 10 C -0.081 4.081 11 C -0.183 4.183 12 C -0.082 4.082 13 C -0.263 4.263 14 C -0.095 4.095 15 C -0.251 4.251 16 C 0.107 3.893 17 C -0.473 4.473 18 H 0.106 0.894 19 C -0.134 4.134 20 N -0.429 5.429 21 Si 0.738 3.262 22 H -0.197 1.197 23 H -0.218 1.218 24 H -0.166 1.166 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.817 -5.866 -7.081 13.450 hybrid contribution 0.440 0.743 0.233 0.895 sum -9.377 -5.123 -6.847 12.691 Atomic orbital electron populations 1.21782 0.95299 1.01974 1.01913 1.21352 0.95694 0.94936 1.03506 1.22080 0.92764 1.00199 1.05204 1.24566 0.91624 0.89396 0.71725 1.90428 1.71516 1.34427 1.33665 1.23315 0.80274 0.97776 1.04937 1.86634 1.16416 1.38585 1.85097 1.24470 0.90804 0.82370 0.72011 1.90647 1.77447 1.25456 1.44191 1.20002 0.84723 0.98488 1.04880 1.19061 1.09549 0.95806 0.93844 1.20462 0.97120 0.94995 0.95618 1.20343 1.11400 0.98089 0.96442 1.20626 0.97999 0.97694 0.93145 1.21005 1.10000 0.97629 0.96496 1.17486 0.88936 0.90281 0.92579 1.19429 1.12210 1.25961 0.89749 0.89409 1.26170 1.00636 0.92065 0.94551 1.69698 1.37922 1.36300 0.99023 0.86317 0.81617 0.79092 0.79214 1.19692 1.21847 1.16571 0.92429 0.92533 0.92626 0.91295 0.91184 0.87947 0.88077 0.87958 0.88300 0.86907 0.88930 0.88856 0.88835 0.88855 0.88185 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.99 5.22 -26.73 -0.14 -1.13 16 3 C -0.17 -1.34 5.64 -27.89 -0.16 -1.50 16 4 C 0.35 4.38 7.24 -29.04 -0.21 4.17 16 5 O -0.43 -6.89 16.12 -13.71 -0.22 -7.12 16 6 C 0.01 0.17 5.88 36.01 0.21 0.38 16 7 O -0.35 -6.34 9.75 -45.92 -0.45 -6.79 16 8 C 0.46 9.37 7.55 36.01 0.27 9.64 16 9 O -0.49 -11.31 15.78 -18.74 -0.30 -11.60 16 10 C -0.04 -0.86 5.30 -29.03 -0.15 -1.02 16 11 C -0.18 -4.14 4.43 -103.91 -0.46 -4.60 16 12 C -0.06 -1.35 9.66 -39.66 -0.38 -1.73 16 13 C -0.24 -5.13 10.05 -39.29 -0.39 -5.53 16 14 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 15 C -0.23 -5.70 7.17 -38.88 -0.28 -5.97 16 16 C 0.11 2.80 5.10 -106.82 -0.54 2.25 16 17 C -0.45 -11.92 8.55 -37.74 -0.32 -12.24 16 18 H 0.09 2.48 6.99 -52.49 -0.37 2.11 16 19 C 0.09 2.22 5.41 -17.35 -0.09 2.12 16 20 N -0.81 -21.39 13.93 55.55 0.77 -20.62 16 21 Si 0.91 20.70 24.52 -169.99 -4.17 16.53 16 22 H -0.27 -6.02 6.71 56.52 0.38 -5.64 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.24 -5.61 6.85 56.52 0.39 -5.22 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.37 8.13 -51.93 -0.42 0.95 16 33 H 0.10 1.18 8.13 -51.92 -0.42 0.76 16 34 H 0.11 2.27 7.15 -51.92 -0.37 1.89 16 35 H 0.09 1.52 8.05 -51.93 -0.42 1.10 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.10 2.44 4.74 -52.48 -0.25 2.19 16 40 H 0.29 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -31.50 340.50 -7.56 -39.06 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.64 Total: 3.27 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -2.69 Total: -17.87 kcal Atomic # 7 Polarization: -21.39 SS G_CDS: 0.77 Total: -20.62 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.96 Total: -25.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.17 Total: 16.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.50 -7.56 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.025 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds