Wall clock time and date at job start Tue Mar 31 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47438 * 2 1 4 4 C 1.50694 * 109.47293 * 179.97438 * 3 2 1 5 5 O 1.20761 * 119.99999 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00225 * 179.97438 * 4 3 2 7 7 O 1.45194 * 109.47450 * 180.02562 * 6 4 3 8 8 C 1.34229 * 117.00124 * 179.97438 * 7 6 4 9 9 O 1.20816 * 120.00012 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99826 * 179.97438 * 8 7 6 11 11 C 1.50704 * 109.46838 * 180.02562 * 10 8 7 12 12 C 1.37639 * 120.12180 * 264.99608 * 11 10 8 13 13 C 1.38610 * 120.24594 * 179.97438 * 12 11 10 14 14 C 1.38661 * 120.50527 * 0.02562 * 13 12 11 15 15 C 1.37593 * 120.24160 * 0.02562 * 14 13 12 16 16 C 1.40699 * 120.13207 * 84.72627 * 11 10 8 17 17 C 1.41398 * 120.24049 * 359.97438 * 16 11 10 18 18 H 1.08002 * 119.99937 * 329.69760 * 17 16 11 19 19 C 1.39938 * 119.99671 * 149.70751 * 17 16 11 20 20 N 1.30822 * 120.00022 * 162.01229 * 19 17 16 21 21 Si 1.86803 * 120.00276 * 342.00724 * 19 17 16 22 22 H 1.48502 * 109.46988 * 95.40559 * 21 19 17 23 23 H 1.48498 * 109.47138 * 215.40343 * 21 19 17 24 24 H 1.48497 * 109.46831 * 335.40536 * 21 19 17 25 25 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47453 * 300.00250 * 1 2 3 27 27 H 1.09005 * 109.46924 * 59.99991 * 1 2 3 28 28 H 1.08993 * 109.47001 * 239.99604 * 2 1 3 29 29 H 1.09005 * 109.46924 * 120.00009 * 2 1 3 30 30 H 1.09004 * 109.47003 * 59.99475 * 3 2 1 31 31 H 1.09005 * 109.47071 * 299.99919 * 3 2 1 32 32 H 1.08999 * 109.47246 * 59.99989 * 6 4 3 33 33 H 1.09011 * 109.47118 * 300.00213 * 6 4 3 34 34 H 1.09007 * 109.46987 * 299.99779 * 10 8 7 35 35 H 1.08993 * 109.47616 * 60.00405 * 10 8 7 36 36 H 1.08002 * 119.87932 * 0.02562 * 12 11 10 37 37 H 1.08006 * 119.75215 * 180.02562 * 13 12 11 38 38 H 1.07995 * 119.87621 * 180.02562 * 14 13 12 39 39 H 1.08006 * 120.12261 * 179.97438 * 15 14 13 40 40 H 0.97003 * 120.00475 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1508 0.3965 0.0006 6 6 4.3006 2.7475 0.0002 7 8 5.7281 2.4821 0.0003 8 6 6.5458 3.5466 -0.0006 9 8 6.0840 4.6631 -0.0010 10 6 8.0398 3.3491 0.0001 11 6 8.7240 4.6918 -0.0005 12 6 9.1305 5.2594 -1.1867 13 6 9.7596 6.4945 -1.1903 14 6 9.9871 7.1720 -0.0021 15 6 9.5902 6.6231 1.1956 16 6 8.9445 5.3727 1.2108 17 6 8.5256 4.8022 2.4349 18 1 7.6610 4.1555 2.4614 19 6 9.2312 5.0757 3.6120 20 7 8.6732 4.8570 4.7749 21 14 10.9698 5.7530 3.5230 22 1 10.9305 7.2334 3.6326 23 1 11.7760 5.1953 4.6384 24 1 11.5849 5.3687 2.2271 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 4.0369 3.3196 0.8897 33 1 4.0376 3.3186 -0.8903 34 1 8.3324 2.7930 0.8909 35 1 8.3330 2.7912 -0.8891 36 1 8.9580 4.7408 -2.1183 37 1 10.0749 6.9327 -2.1258 38 1 10.4778 8.1339 -0.0167 39 1 9.7687 7.1523 2.1200 40 1 9.1624 5.0462 5.5909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777162355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:26 Heat of formation + Delta-G solvation = -137.846899 kcal Electronic energy + Delta-G solvation = -22333.206829 eV Core-core repulsion = 18883.666195 eV Total energy + Delta-G solvation = -3449.540634 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70309 -40.54087 -39.57101 -37.35237 -35.51943 -35.36867 -33.72537 -32.20734 -31.21530 -29.11576 -27.78690 -26.70549 -23.42547 -23.05399 -22.39935 -21.16306 -20.71686 -19.28663 -18.72006 -17.90263 -17.83102 -17.32741 -16.72375 -16.62224 -16.22349 -15.90981 -15.61086 -15.45358 -15.12518 -14.59569 -14.07555 -14.03765 -13.89345 -13.77769 -13.52394 -13.14892 -12.91899 -12.84641 -12.79648 -12.71597 -12.53934 -12.05741 -12.02000 -11.85637 -11.62986 -11.57798 -11.54723 -11.43432 -10.98938 -10.71504 -9.43085 -9.36574 -8.89245 -6.49582 0.69855 0.81529 0.88084 1.26399 1.27157 1.38770 1.49465 1.65200 2.12610 2.62124 2.91859 3.51956 3.81972 3.94144 4.00310 4.09105 4.12501 4.14454 4.22637 4.31612 4.45094 4.51799 4.58992 4.68937 4.69246 4.76831 4.88331 4.90524 4.92614 5.13202 5.22143 5.25305 5.30776 5.34053 5.43994 5.64171 5.83735 5.91326 6.01996 6.25355 6.38096 6.42421 6.75050 6.82192 6.86520 8.18758 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020849 B = 0.003662 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.678950 B = 7644.782807 C = 8543.049717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.156 4.156 4 C 0.363 3.637 5 O -0.474 6.474 6 C -0.002 4.002 7 O -0.358 6.358 8 C 0.467 3.533 9 O -0.525 6.525 10 C -0.047 4.047 11 C -0.186 4.186 12 C -0.071 4.071 13 C -0.229 4.229 14 C -0.085 4.085 15 C -0.254 4.254 16 C 0.085 3.915 17 C -0.474 4.474 18 H 0.054 0.946 19 C 0.048 3.952 20 N -0.850 5.850 21 Si 0.965 3.035 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.249 1.249 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.006 -4.753 -9.917 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.192 4.192 4 C 0.239 3.761 5 O -0.348 6.348 6 C -0.076 4.076 7 O -0.275 6.275 8 C 0.311 3.689 9 O -0.413 6.413 10 C -0.085 4.085 11 C -0.187 4.187 12 C -0.089 4.089 13 C -0.248 4.248 14 C -0.103 4.103 15 C -0.273 4.273 16 C 0.083 3.917 17 C -0.504 4.504 18 H 0.072 0.928 19 C -0.167 4.167 20 N -0.476 5.476 21 Si 0.788 3.212 22 H -0.189 1.189 23 H -0.206 1.206 24 H -0.172 1.172 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.111 0.889 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.912 -5.029 -9.622 14.701 hybrid contribution 0.380 0.484 0.792 1.003 sum -9.532 -4.545 -8.830 13.765 Atomic orbital electron populations 1.21751 0.93428 1.02466 1.02866 1.21359 0.97228 0.94850 1.02231 1.22154 0.88851 1.00614 1.07628 1.25069 0.93421 0.87833 0.69803 1.90426 1.72685 1.35511 1.36135 1.23812 0.77955 0.99544 1.06293 1.86598 1.18689 1.37744 1.84516 1.24399 0.91215 0.82175 0.71109 1.90620 1.78103 1.26611 1.45985 1.20062 0.84647 0.97580 1.06163 1.19440 1.08828 0.96692 0.93772 1.20926 0.96254 0.95401 0.96349 1.20904 1.08785 0.97478 0.97594 1.21029 0.97695 0.99033 0.92546 1.21152 1.10989 0.97598 0.97566 1.17716 0.89917 0.91083 0.93008 1.19346 1.12383 1.27279 0.91352 0.92800 1.26819 1.03501 0.92312 0.94050 1.69733 1.39409 1.38809 0.99681 0.85497 0.77801 0.78856 0.79007 1.18925 1.20574 1.17220 0.92280 0.91820 0.91374 0.92316 0.92936 0.85782 0.84953 0.87675 0.85926 0.88048 0.85081 0.85214 0.85030 0.85722 0.88875 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.88 5.22 30.59 0.16 -1.72 16 3 C -0.16 -2.20 5.64 29.84 0.17 -2.03 16 4 C 0.36 8.74 7.24 29.10 0.21 8.95 16 5 O -0.47 -15.42 16.12 17.39 0.28 -15.14 16 6 C 0.00 -0.05 5.88 71.24 0.42 0.37 16 7 O -0.36 -13.09 9.75 -45.04 -0.44 -13.53 16 8 C 0.47 19.09 7.55 71.24 0.54 19.63 16 9 O -0.53 -24.30 15.78 21.99 0.35 -23.95 16 10 C -0.05 -1.87 5.30 29.10 0.15 -1.72 16 11 C -0.19 -8.33 4.43 -19.40 -0.09 -8.42 16 12 C -0.07 -2.78 9.66 22.22 0.21 -2.57 16 13 C -0.23 -8.67 10.05 22.46 0.23 -8.44 16 14 C -0.09 -3.50 10.02 22.22 0.22 -3.28 16 15 C -0.25 -12.28 7.17 22.73 0.16 -12.11 16 16 C 0.09 4.37 5.10 -21.29 -0.11 4.27 16 17 C -0.47 -26.60 8.55 23.46 0.20 -26.40 16 18 H 0.05 3.27 6.99 -2.91 -0.02 3.25 16 19 C 0.05 2.58 5.41 85.26 0.46 3.04 16 20 N -0.85 -47.25 13.93 21.82 0.30 -46.94 16 21 Si 0.96 43.37 24.52 68.60 1.68 45.05 16 22 H -0.26 -11.38 6.71 99.48 0.67 -10.71 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.25 -11.26 6.85 99.48 0.68 -10.58 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 29 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 30 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.11 2.82 8.13 -2.39 -0.02 2.80 16 33 H 0.12 2.74 8.13 -2.38 -0.02 2.72 16 34 H 0.10 4.24 7.15 -2.38 -0.02 4.22 16 35 H 0.13 4.03 8.05 -2.39 -0.02 4.01 16 36 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.12 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.09 4.54 4.74 -2.91 -0.01 4.52 16 40 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 Total: -1.00 -71.15 340.50 6.80 -64.35 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.97 Total: 21.49 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.66 Total: -31.33 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.30 Total: -46.94 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: 0.19 Total: -52.61 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.68 Total: 45.05 kcal Total: -71.15 6.80 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.498 kcal (2) G-P(sol) polarization free energy of solvation -71.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds