Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50701 * 109.46959 * 2 1 4 4 O 1.20758 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99814 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47015 * 45.00044 * 5 3 2 7 7 C 1.52999 * 109.47308 * 285.00174 * 5 3 2 8 8 O 1.45195 * 109.47214 * 165.00144 * 5 3 2 9 9 C 1.34230 * 117.00277 * 210.00293 * 8 5 3 10 10 O 1.20823 * 119.99740 * 359.97438 * 9 8 5 11 11 C 1.50695 * 120.00274 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47556 * 179.97438 * 11 9 8 13 13 C 1.37633 * 120.12801 * 265.00650 * 12 11 9 14 14 C 1.38617 * 120.24598 * 180.29530 * 13 12 11 15 15 C 1.38655 * 120.49962 * 359.43755 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55942 * 15 14 13 17 17 C 1.40697 * 120.12236 * 85.01918 * 12 11 9 18 18 C 1.41390 * 120.25030 * 359.96070 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08548 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.08926 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46882 * 299.99796 * 1 2 3 28 28 H 1.09002 * 109.46821 * 60.00309 * 1 2 3 29 29 H 1.09002 * 109.46832 * 240.00346 * 2 1 3 30 30 H 1.08996 * 109.47057 * 120.00073 * 2 1 3 31 31 H 1.09002 * 109.46797 * 59.99622 * 7 5 3 32 32 H 1.08995 * 109.47567 * 179.97438 * 7 5 3 33 33 H 1.08999 * 109.47391 * 300.00116 * 7 5 3 34 34 H 1.09003 * 109.47324 * 59.99706 * 11 9 8 35 35 H 1.09000 * 109.47440 * 299.99785 * 11 9 8 36 36 H 1.07994 * 119.88003 * 0.02562 * 13 12 11 37 37 H 1.07999 * 119.74833 * 179.69429 * 14 13 12 38 38 H 1.08004 * 119.87487 * 180.29906 * 15 14 13 39 39 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 40 40 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6962 0.0006 6 1 4.0043 1.0480 -0.7258 7 6 4.0831 1.4225 1.3942 8 8 3.7484 3.0846 -0.3538 9 6 4.8962 3.3657 -0.9904 10 8 5.6794 2.4809 -1.2427 11 6 5.2086 4.7849 -1.3893 12 6 6.5460 4.8291 -2.0826 13 6 7.6845 5.1274 -1.3691 14 6 8.9150 5.1747 -2.0056 15 6 9.0157 4.9115 -3.3632 16 6 7.8907 4.6111 -4.0964 17 6 6.6353 4.5659 -3.4619 18 6 5.4726 4.2579 -4.2050 19 1 4.6177 3.8182 -3.7126 20 6 5.4293 4.5225 -5.5785 21 7 6.3062 5.3303 -6.1169 22 14 4.1192 3.7226 -6.6431 23 1 3.2555 2.8583 -5.7993 24 1 3.2912 4.7755 -7.2839 25 1 4.7700 2.8976 -7.6925 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9071 0.3802 1.6602 32 1 5.1548 1.6212 1.3945 33 1 3.5928 2.0706 2.1206 34 1 5.2401 5.4139 -0.4996 35 1 4.4361 5.1507 -2.0657 36 1 7.6184 5.3295 -0.3103 37 1 9.8026 5.4144 -1.4389 38 1 9.9803 4.9464 -3.8479 39 1 7.9709 4.4104 -5.1545 40 1 6.2766 5.5135 -7.0690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777162617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -118.941795 kcal Electronic energy + Delta-G solvation = -22929.501269 eV Core-core repulsion = 19480.780422 eV Total energy + Delta-G solvation = -3448.720847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43072 -39.23793 -37.62113 -35.87350 -33.67075 -33.29621 -32.12133 -31.39721 -29.51320 -27.13914 -25.91011 -25.12113 -23.46518 -21.07952 -20.93084 -19.53938 -19.33884 -17.30543 -17.19947 -16.76739 -15.97893 -15.52941 -15.42736 -15.28025 -14.55678 -14.21825 -13.95642 -13.66441 -13.38889 -13.05276 -12.65744 -12.63911 -12.52205 -12.34745 -12.02989 -11.81938 -11.62251 -11.51048 -11.35590 -11.23471 -11.10624 -11.02151 -10.74437 -10.54354 -10.41894 -9.87743 -9.55058 -9.49500 -9.40075 -9.20357 -7.38690 -7.35816 -6.78389 -4.40160 1.80946 2.60578 2.82088 2.89597 3.06084 3.11679 3.16276 3.23416 3.91588 3.96102 4.61759 4.66948 4.77279 4.91015 4.93801 5.02861 5.23807 5.40545 5.56868 5.57631 5.62812 5.68323 5.75263 5.93260 5.95380 5.98069 6.06022 6.24480 6.40366 6.46798 6.70785 6.89687 7.04424 7.24324 7.36424 7.38400 7.59135 7.86203 8.00646 8.07945 8.25751 8.40706 8.60077 8.86002 8.95214 10.15710 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.005229 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.717903 B = 5353.693779 C = 6925.230371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C 0.356 3.644 4 O -0.427 6.427 5 C 0.033 3.967 6 H 0.110 0.890 7 C -0.160 4.160 8 O -0.346 6.346 9 C 0.459 3.541 10 O -0.492 6.492 11 C -0.041 4.041 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.240 4.240 15 C -0.104 4.104 16 C -0.158 4.158 17 C 0.130 3.870 18 C -0.458 4.458 19 H 0.074 0.926 20 C 0.078 3.922 21 N -0.791 5.791 22 Si 0.903 3.097 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.271 1.271 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -8.240 9.403 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.228 3.772 4 O -0.298 6.298 5 C -0.024 4.024 6 H 0.128 0.872 7 C -0.217 4.217 8 O -0.264 6.264 9 C 0.302 3.698 10 O -0.377 6.377 11 C -0.078 4.078 12 C -0.196 4.196 13 C -0.095 4.095 14 C -0.259 4.259 15 C -0.122 4.122 16 C -0.177 4.177 17 C 0.128 3.872 18 C -0.487 4.487 19 H 0.092 0.908 20 C -0.140 4.140 21 N -0.416 5.416 22 Si 0.727 3.273 23 H -0.185 1.185 24 H -0.198 1.198 25 H -0.196 1.196 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.127 0.873 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.148 -7.918 9.102 14.023 hybrid contribution -0.286 -0.542 -0.620 0.872 sum -7.434 -8.460 8.482 14.099 Atomic orbital electron populations 1.21601 0.93383 1.01916 1.03273 1.22032 0.98532 0.95074 1.05064 1.24637 0.89544 0.91484 0.71506 1.90411 1.58340 1.47630 1.33401 1.23033 0.95697 0.84197 0.99438 0.87195 1.22064 1.02797 1.02576 0.94298 1.86720 1.41693 1.27702 1.70303 1.24641 0.78082 0.93757 0.73365 1.90621 1.47819 1.48568 1.50655 1.19997 0.99010 0.87987 1.00840 1.19046 0.91372 1.14223 0.94995 1.20321 0.92795 0.99609 0.96726 1.20314 0.95916 1.14679 0.95014 1.20705 0.97113 1.00395 0.94020 1.21301 0.91437 1.05217 0.99792 1.17350 0.92919 0.86926 0.89999 1.19522 1.00312 1.36337 0.92553 0.90816 1.25875 0.96482 0.92957 0.98657 1.69819 1.32651 1.25552 1.13607 0.86344 0.80974 0.80031 0.79960 1.18479 1.19825 1.19614 0.91855 0.92049 0.91932 0.87997 0.88119 0.90423 0.90516 0.91300 0.89251 0.87346 0.89538 0.89495 0.89439 0.86430 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 37.16 0.34 -0.91 16 2 C -0.17 -1.47 6.34 -27.88 -0.18 -1.64 16 3 C 0.36 4.64 6.45 -29.04 -0.19 4.46 16 4 O -0.43 -7.07 16.19 -13.23 -0.21 -7.29 16 5 C 0.03 0.47 2.91 -27.88 -0.08 0.39 16 6 H 0.11 1.59 7.16 -51.93 -0.37 1.21 16 7 C -0.16 -1.79 9.52 37.16 0.35 -1.44 16 8 O -0.35 -6.29 9.46 -45.78 -0.43 -6.72 16 9 C 0.46 9.36 7.56 36.00 0.27 9.63 16 10 O -0.49 -11.20 15.25 -18.75 -0.29 -11.49 16 11 C -0.04 -0.84 5.29 -29.04 -0.15 -0.99 16 12 C -0.19 -4.67 4.43 -103.91 -0.46 -5.13 16 13 C -0.08 -1.73 9.66 -39.66 -0.38 -2.12 16 14 C -0.24 -5.48 10.05 -39.29 -0.39 -5.87 16 15 C -0.10 -2.49 10.02 -39.66 -0.40 -2.88 16 16 C -0.16 -4.17 8.68 -38.87 -0.34 -4.50 16 17 C 0.13 3.46 5.56 -106.83 -0.59 2.86 16 18 C -0.46 -12.05 8.14 -37.75 -0.31 -12.35 16 19 H 0.07 1.91 6.68 -52.48 -0.35 1.56 16 20 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 21 N -0.79 -20.27 10.97 55.55 0.61 -19.66 16 22 Si 0.90 18.92 29.59 -169.99 -5.03 13.89 16 23 H -0.26 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.61 7.89 -51.93 -0.41 0.20 16 31 H 0.08 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.55 8.05 -51.93 -0.42 1.13 16 35 H 0.11 2.24 7.06 -51.93 -0.37 1.87 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 39 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 40 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -31.03 343.97 -8.35 -39.38 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.59 Total: 5.33 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -2.60 Total: -18.63 kcal Atomic # 7 Polarization: -20.27 SS G_CDS: 0.61 Total: -19.66 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.93 Total: -25.49 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.03 -8.35 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.562 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds