Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50701 * 109.46959 * 2 1 4 4 O 1.20758 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99814 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47015 * 45.00044 * 5 3 2 7 7 C 1.52999 * 109.47308 * 285.00174 * 5 3 2 8 8 O 1.45195 * 109.47214 * 165.00144 * 5 3 2 9 9 C 1.34230 * 117.00277 * 210.00293 * 8 5 3 10 10 O 1.20823 * 119.99740 * 359.97438 * 9 8 5 11 11 C 1.50695 * 120.00274 * 180.02562 * 9 8 5 12 12 C 1.50701 * 109.47556 * 179.97438 * 11 9 8 13 13 C 1.37633 * 120.12801 * 265.00650 * 12 11 9 14 14 C 1.38617 * 120.24598 * 180.29530 * 13 12 11 15 15 C 1.38655 * 120.49962 * 359.43755 * 14 13 12 16 16 C 1.37604 * 120.25111 * 0.55942 * 15 14 13 17 17 C 1.40697 * 120.12236 * 85.01918 * 12 11 9 18 18 C 1.41390 * 120.25030 * 359.96070 * 17 12 11 19 19 H 1.08004 * 119.99865 * 334.08548 * 18 17 12 20 20 C 1.39940 * 120.00399 * 154.08926 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.61139 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.62242 * 20 18 17 23 23 H 1.48494 * 109.47012 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47407 * 119.99663 * 22 20 18 25 25 H 1.48508 * 109.46756 * 239.99409 * 22 20 18 26 26 H 1.09000 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46882 * 299.99796 * 1 2 3 28 28 H 1.09002 * 109.46821 * 60.00309 * 1 2 3 29 29 H 1.09002 * 109.46832 * 240.00346 * 2 1 3 30 30 H 1.08996 * 109.47057 * 120.00073 * 2 1 3 31 31 H 1.09002 * 109.46797 * 59.99622 * 7 5 3 32 32 H 1.08995 * 109.47567 * 179.97438 * 7 5 3 33 33 H 1.08999 * 109.47391 * 300.00116 * 7 5 3 34 34 H 1.09003 * 109.47324 * 59.99706 * 11 9 8 35 35 H 1.09000 * 109.47440 * 299.99785 * 11 9 8 36 36 H 1.07994 * 119.88003 * 0.02562 * 13 12 11 37 37 H 1.07999 * 119.74833 * 179.69429 * 14 13 12 38 38 H 1.08004 * 119.87487 * 180.29906 * 15 14 13 39 39 H 1.07992 * 120.12974 * 179.74704 * 16 15 14 40 40 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2476 2.3387 -0.0005 5 6 3.5140 1.6962 0.0006 6 1 4.0043 1.0480 -0.7258 7 6 4.0831 1.4225 1.3942 8 8 3.7484 3.0846 -0.3538 9 6 4.8962 3.3657 -0.9904 10 8 5.6794 2.4809 -1.2427 11 6 5.2086 4.7849 -1.3893 12 6 6.5460 4.8291 -2.0826 13 6 7.6845 5.1274 -1.3691 14 6 8.9150 5.1747 -2.0056 15 6 9.0157 4.9115 -3.3632 16 6 7.8907 4.6111 -4.0964 17 6 6.6353 4.5659 -3.4619 18 6 5.4726 4.2579 -4.2050 19 1 4.6177 3.8182 -3.7126 20 6 5.4293 4.5225 -5.5785 21 7 6.3062 5.3303 -6.1169 22 14 4.1192 3.7226 -6.6431 23 1 3.2555 2.8583 -5.7993 24 1 3.2912 4.7755 -7.2839 25 1 4.7700 2.8976 -7.6925 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.9071 0.3802 1.6602 32 1 5.1548 1.6212 1.3945 33 1 3.5928 2.0706 2.1206 34 1 5.2401 5.4139 -0.4996 35 1 4.4361 5.1507 -2.0657 36 1 7.6184 5.3295 -0.3103 37 1 9.8026 5.4144 -1.4389 38 1 9.9803 4.9464 -3.8479 39 1 7.9709 4.4104 -5.1545 40 1 6.2766 5.5135 -7.0690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777162617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -134.012569 kcal Electronic energy + Delta-G solvation = -22930.154787 eV Core-core repulsion = 19480.780422 eV Total energy + Delta-G solvation = -3449.374365 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.81600 -40.52042 -39.38722 -37.39438 -35.55163 -34.22867 -33.64261 -32.58215 -31.39754 -28.86354 -27.03865 -26.76669 -24.54442 -22.87389 -22.49589 -21.08234 -20.54451 -19.12409 -18.76621 -17.99619 -17.39312 -17.13521 -16.64421 -16.46428 -16.26429 -15.63199 -15.43146 -15.35921 -14.64661 -14.42605 -14.18097 -13.79772 -13.59761 -13.44856 -13.41612 -13.25125 -12.97603 -12.93724 -12.78458 -12.75800 -12.56016 -12.46143 -12.15051 -12.04638 -11.88422 -11.47871 -11.37463 -11.27139 -11.07215 -10.58788 -9.26992 -9.24574 -8.64957 -6.35868 0.77336 0.89875 1.06415 1.29672 1.33070 1.45728 1.48896 1.71162 2.16634 2.73013 2.88970 3.67771 3.80113 3.86462 3.93841 4.02149 4.20776 4.23683 4.31644 4.34789 4.54591 4.62947 4.66277 4.69226 4.74043 4.76045 4.96502 4.98316 5.00434 5.08163 5.14801 5.29433 5.32663 5.38659 5.49528 5.72223 5.99259 6.10802 6.18388 6.36754 6.37731 6.68121 6.86375 6.93477 7.04905 8.31674 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.005229 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.717903 B = 5353.693779 C = 6925.230371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.162 4.162 3 C 0.360 3.640 4 O -0.471 6.471 5 C 0.016 3.984 6 H 0.108 0.892 7 C -0.154 4.154 8 O -0.354 6.354 9 C 0.467 3.533 10 O -0.522 6.522 11 C -0.044 4.044 12 C -0.201 4.201 13 C -0.084 4.084 14 C -0.239 4.239 15 C -0.111 4.111 16 C -0.190 4.190 17 C 0.099 3.901 18 C -0.487 4.487 19 H 0.065 0.935 20 C 0.040 3.960 21 N -0.821 5.821 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.261 1.261 25 H -0.263 1.263 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.119 0.881 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.494 -9.598 10.917 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.199 4.199 3 C 0.236 3.764 4 O -0.345 6.345 5 C -0.039 4.039 6 H 0.125 0.875 7 C -0.211 4.211 8 O -0.272 6.272 9 C 0.311 3.689 10 O -0.410 6.410 11 C -0.081 4.081 12 C -0.202 4.202 13 C -0.102 4.102 14 C -0.258 4.258 15 C -0.130 4.130 16 C -0.210 4.210 17 C 0.097 3.903 18 C -0.516 4.516 19 H 0.084 0.916 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.789 3.211 23 H -0.190 1.190 24 H -0.186 1.186 25 H -0.187 1.187 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.137 0.863 30 H 0.156 0.844 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.637 -9.277 10.633 16.045 hybrid contribution -0.091 -0.126 -0.965 0.977 sum -7.728 -9.402 9.668 15.543 Atomic orbital electron populations 1.21631 0.93437 1.03234 1.01981 1.22136 0.98369 0.91848 1.07547 1.25215 0.88380 0.93185 0.69667 1.90408 1.58926 1.49305 1.35831 1.23588 0.97274 0.81835 1.01218 0.87457 1.22087 1.01556 1.05282 0.92179 1.86671 1.40317 1.30548 1.69653 1.24380 0.78271 0.93256 0.72949 1.90600 1.48975 1.49336 1.52053 1.20001 0.97204 0.89061 1.01798 1.19418 0.93413 1.12931 0.94469 1.20752 0.92340 0.98687 0.98421 1.20744 0.97302 1.13097 0.94685 1.21000 0.97357 0.99769 0.94844 1.21304 0.92615 1.07632 0.99409 1.17708 0.93127 0.87925 0.91547 1.19629 1.00376 1.37891 0.93717 0.91648 1.26611 0.98547 0.93032 0.99373 1.69862 1.34146 1.26380 1.14289 0.85371 0.78361 0.79196 0.78152 1.18970 1.18595 1.18716 0.89133 0.92729 0.93973 0.86285 0.84405 0.86314 0.91918 0.90968 0.85937 0.88118 0.86205 0.86266 0.87300 0.88293 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.20 71.99 0.66 -1.56 16 2 C -0.16 -2.32 6.34 29.85 0.19 -2.13 16 3 C 0.36 8.93 6.45 29.10 0.19 9.12 16 4 O -0.47 -15.54 16.19 16.94 0.27 -15.26 16 5 C 0.02 0.45 2.91 29.85 0.09 0.54 16 6 H 0.11 3.02 7.16 -2.38 -0.02 3.00 16 7 C -0.15 -3.10 9.52 71.98 0.69 -2.42 16 8 O -0.35 -12.83 9.46 -45.18 -0.43 -13.25 16 9 C 0.47 19.12 7.56 71.23 0.54 19.66 16 10 O -0.52 -23.99 15.25 21.97 0.34 -23.66 16 11 C -0.04 -1.78 5.29 29.10 0.15 -1.63 16 12 C -0.20 -9.64 4.43 -19.41 -0.09 -9.73 16 13 C -0.08 -3.69 9.66 22.22 0.21 -3.47 16 14 C -0.24 -10.51 10.05 22.46 0.23 -10.28 16 15 C -0.11 -5.32 10.02 22.22 0.22 -5.10 16 16 C -0.19 -10.31 8.68 22.73 0.20 -10.12 16 17 C 0.10 5.40 5.56 -21.29 -0.12 5.29 16 18 C -0.49 -26.53 8.14 23.46 0.19 -26.34 16 19 H 0.07 3.54 6.68 -2.91 -0.02 3.52 16 20 C 0.04 2.03 5.16 85.26 0.44 2.47 16 21 N -0.82 -43.34 10.97 21.82 0.24 -43.10 16 22 Si 0.97 39.53 29.59 68.60 2.03 41.56 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 25 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 26 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.90 8.10 -2.39 -0.02 0.88 16 28 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 29 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.14 1.00 7.89 -2.39 -0.02 0.98 16 31 H 0.12 1.38 7.89 -2.39 -0.02 1.37 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 4.08 8.05 -2.39 -0.02 4.06 16 35 H 0.10 4.27 7.06 -2.39 -0.02 4.25 16 36 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 38 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 39 H 0.10 5.61 6.22 -2.91 -0.02 5.59 16 40 H 0.29 13.72 8.30 -92.71 -0.77 12.95 16 Total: -1.00 -70.09 343.97 7.28 -62.81 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 1.04 Total: 26.59 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 3.79 Total: -35.69 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.24 Total: -43.10 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: 0.18 Total: -52.18 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -70.09 7.28 -62.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777162617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.203 kcal (2) G-P(sol) polarization free energy of solvation -70.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds