Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 C 1.50697 * 109.47067 * 120.00060 * 2 1 3 5 5 O 1.20770 * 119.99934 * 334.99716 * 4 2 1 6 6 C 1.50696 * 120.00385 * 154.99695 * 4 2 1 7 7 O 1.45197 * 109.47668 * 179.97438 * 6 4 2 8 8 C 1.34224 * 117.00446 * 179.97438 * 7 6 4 9 9 O 1.20830 * 119.99648 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00250 * 180.02562 * 8 7 6 11 11 C 1.50708 * 109.47368 * 180.02562 * 10 8 7 12 12 C 1.37631 * 120.12797 * 265.00428 * 11 10 8 13 13 C 1.38617 * 120.24935 * 179.97438 * 12 11 10 14 14 C 1.38659 * 120.49753 * 0.02562 * 13 12 11 15 15 C 1.37591 * 120.24814 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12406 * 84.72361 * 11 10 8 17 17 C 1.41394 * 120.24704 * 0.02562 * 16 11 10 18 18 H 1.07999 * 119.99576 * 333.89506 * 17 16 11 19 19 C 1.39936 * 120.00084 * 153.89383 * 17 16 11 20 20 N 1.30823 * 120.00218 * 343.71483 * 19 17 16 21 21 Si 1.86806 * 120.00088 * 163.71714 * 19 17 16 22 22 H 1.48497 * 109.46918 * 60.00210 * 21 19 17 23 23 H 1.48502 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46900 * 300.00273 * 21 19 17 25 25 H 1.08996 * 109.47102 * 300.00506 * 1 2 3 26 26 H 1.09007 * 109.47056 * 60.00051 * 1 2 3 27 27 H 1.08998 * 109.47616 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46906 * 239.99868 * 2 1 3 29 29 H 1.08996 * 109.47488 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46939 * 300.00021 * 3 2 1 31 31 H 1.08996 * 109.47371 * 59.99659 * 3 2 1 32 32 H 1.09003 * 109.46840 * 59.99870 * 6 4 2 33 33 H 1.09006 * 109.46868 * 300.00366 * 6 4 2 34 34 H 1.09000 * 109.47361 * 300.00222 * 10 8 7 35 35 H 1.08997 * 109.47049 * 60.00152 * 10 8 7 36 36 H 1.08005 * 119.87632 * 359.97438 * 12 11 10 37 37 H 1.07993 * 119.74862 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.87354 * 180.02562 * 14 13 12 39 39 H 1.08008 * 120.12341 * 179.97438 * 15 14 13 40 40 H 0.97001 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3399 -0.7702 2.2181 6 6 3.3985 -1.3462 1.2285 7 8 3.6480 -1.9616 2.5197 8 6 4.8298 -2.5763 2.6838 9 8 5.6298 -2.5990 1.7785 10 6 5.1591 -3.2381 3.9970 11 6 6.5345 -3.8493 3.9207 12 6 6.6831 -5.1772 3.5906 13 6 7.9471 -5.7418 3.5192 14 6 9.0747 -4.9780 3.7791 15 6 8.9499 -3.6488 4.1120 16 6 7.6721 -3.0631 4.1808 17 6 7.5320 -1.6965 4.5155 18 1 6.6660 -1.1447 4.1809 19 6 8.5153 -1.0591 5.2803 20 7 9.3864 -1.7697 5.9494 21 14 8.5842 0.8065 5.3459 22 1 7.3075 1.3299 5.8948 23 1 9.7083 1.2300 6.2190 24 1 8.7911 1.3426 3.9766 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 4.1538 -0.5837 1.0379 33 1 3.4445 -2.1062 0.4484 34 1 5.1358 -2.4952 4.7943 35 1 4.4259 -4.0174 4.2050 36 1 5.8116 -5.7816 3.3866 37 1 8.0543 -6.7845 3.2591 38 1 10.0546 -5.4281 3.7201 39 1 9.8296 -3.0558 4.3145 40 1 10.0683 -1.3279 6.4793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777167770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = -120.074818 kcal Electronic energy + Delta-G solvation = -22588.068874 eV Core-core repulsion = 19139.298895 eV Total energy + Delta-G solvation = -3448.769979 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33489 -39.38958 -37.61003 -35.78485 -34.76484 -33.67260 -31.89556 -29.56642 -29.35672 -27.45866 -26.89786 -25.09188 -23.36401 -21.14765 -20.94206 -19.56104 -19.20154 -17.24981 -17.15870 -16.73413 -16.42005 -15.66961 -15.40464 -15.01311 -14.59572 -14.41020 -14.04055 -13.65980 -13.63233 -13.04450 -12.72083 -12.64840 -12.53272 -12.36007 -12.14246 -11.82044 -11.59326 -11.47280 -11.32254 -11.23949 -11.12081 -11.02088 -10.75173 -10.44829 -10.43786 -9.95161 -9.59170 -9.53396 -9.41209 -9.19438 -7.38731 -7.35872 -6.78062 -4.40454 1.76894 2.58466 2.83969 2.88518 3.04609 3.07808 3.13287 3.24880 3.91085 3.96849 4.45553 4.62198 4.64634 4.78848 5.11615 5.15581 5.23401 5.30132 5.42426 5.47115 5.49648 5.64473 5.73934 5.84831 5.90548 5.95558 6.03146 6.24705 6.40070 6.46964 6.69663 6.86976 7.04064 7.24393 7.33660 7.36590 7.58968 7.86234 8.00242 8.07937 8.25660 8.38992 8.59645 8.85681 8.95202 10.15876 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.004454 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.912637 B = 6285.148716 C = 7652.404255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C -0.144 4.144 4 C 0.358 3.642 5 O -0.427 6.427 6 C 0.012 3.988 7 O -0.351 6.351 8 C 0.459 3.541 9 O -0.492 6.492 10 C -0.040 4.040 11 C -0.196 4.196 12 C -0.076 4.076 13 C -0.240 4.240 14 C -0.104 4.104 15 C -0.158 4.158 16 C 0.131 3.869 17 C -0.459 4.459 18 H 0.073 0.927 19 C 0.079 3.921 20 N -0.792 5.792 21 Si 0.904 3.096 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.264 1.264 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.347 4.456 -8.900 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C -0.201 4.201 4 C 0.231 3.769 5 O -0.297 6.297 6 C -0.063 4.063 7 O -0.269 6.269 8 C 0.301 3.699 9 O -0.377 6.377 10 C -0.078 4.078 11 C -0.197 4.197 12 C -0.095 4.095 13 C -0.259 4.259 14 C -0.122 4.122 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.488 4.488 18 H 0.091 0.909 19 C -0.139 4.139 20 N -0.417 5.417 21 Si 0.728 3.272 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.188 1.188 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.118 0.882 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.286 4.459 -8.478 14.803 hybrid contribution 0.353 0.816 -0.219 0.916 sum -10.933 5.275 -8.698 14.933 Atomic orbital electron populations 1.21710 0.92698 1.02673 1.02734 1.21617 0.98274 0.98139 0.97596 1.21758 1.01789 0.93398 1.03158 1.24583 0.86769 0.76663 0.88904 1.90420 1.56520 1.48215 1.34539 1.23312 0.97308 0.99221 0.86452 1.86651 1.39152 1.66137 1.34929 1.24653 0.77979 0.75508 0.91711 1.90642 1.48072 1.55958 1.43035 1.19995 0.96722 0.99811 0.91249 1.19053 0.91746 0.93576 1.15335 1.20329 0.95781 0.94251 0.99097 1.20317 0.92928 0.98281 1.14397 1.20704 0.96335 0.95020 1.00179 1.21308 0.97898 0.94107 1.04454 1.17341 0.90299 0.92337 0.87174 1.19460 1.05658 0.94960 1.28756 0.90873 1.25873 0.94188 1.00617 0.93271 1.69803 1.13570 1.37922 1.20384 0.86434 0.78863 0.82640 0.79271 1.18893 1.20194 1.18848 0.91510 0.91684 0.92270 0.88208 0.91649 0.91071 0.91849 0.88049 0.88243 0.87303 0.89204 0.89522 0.89486 0.89427 0.86388 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.73 37.16 0.32 -0.81 16 2 C -0.14 -1.16 3.18 -91.77 -0.29 -1.45 16 3 C -0.14 -1.08 9.18 37.16 0.34 -0.74 16 4 C 0.36 4.46 6.35 -29.04 -0.18 4.28 16 5 O -0.43 -6.81 16.24 -13.72 -0.22 -7.03 16 6 C 0.01 0.17 5.88 36.00 0.21 0.38 16 7 O -0.35 -6.32 9.75 -45.90 -0.45 -6.77 16 8 C 0.46 9.35 7.57 36.00 0.27 9.62 16 9 O -0.49 -11.28 15.78 -18.75 -0.30 -11.58 16 10 C -0.04 -0.83 5.29 -29.03 -0.15 -0.98 16 11 C -0.20 -4.69 4.43 -103.91 -0.46 -5.15 16 12 C -0.08 -1.74 9.66 -39.66 -0.38 -2.12 16 13 C -0.24 -5.49 10.05 -39.29 -0.39 -5.88 16 14 C -0.10 -2.49 10.02 -39.66 -0.40 -2.89 16 15 C -0.16 -4.17 8.68 -38.88 -0.34 -4.51 16 16 C 0.13 3.47 5.56 -106.82 -0.59 2.87 16 17 C -0.46 -12.02 8.14 -37.75 -0.31 -12.32 16 18 H 0.07 1.87 6.67 -52.49 -0.35 1.52 16 19 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 20 N -0.79 -20.23 10.95 55.55 0.61 -19.63 16 21 Si 0.90 18.74 29.59 -169.99 -5.03 13.71 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.50 7.11 56.52 0.40 -5.09 16 25 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 26 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 1.32 8.13 -51.93 -0.42 0.90 16 33 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 34 H 0.11 2.22 7.08 -51.93 -0.37 1.85 16 35 H 0.09 1.56 8.05 -51.93 -0.42 1.14 16 36 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.12 3.18 6.20 -52.48 -0.33 2.86 16 40 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -30.93 344.99 -8.29 -39.22 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.65 Total: 4.71 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -2.45 Total: -17.83 kcal Atomic # 7 Polarization: -20.23 SS G_CDS: 0.61 Total: -19.63 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.97 Total: -25.39 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.93 -8.29 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777167770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.853 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds