Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47470 * 2 1 4 4 C 1.50697 * 109.47067 * 120.00060 * 2 1 3 5 5 O 1.20770 * 119.99934 * 334.99716 * 4 2 1 6 6 C 1.50696 * 120.00385 * 154.99695 * 4 2 1 7 7 O 1.45197 * 109.47668 * 179.97438 * 6 4 2 8 8 C 1.34224 * 117.00446 * 179.97438 * 7 6 4 9 9 O 1.20830 * 119.99648 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00250 * 180.02562 * 8 7 6 11 11 C 1.50708 * 109.47368 * 180.02562 * 10 8 7 12 12 C 1.37631 * 120.12797 * 265.00428 * 11 10 8 13 13 C 1.38617 * 120.24935 * 179.97438 * 12 11 10 14 14 C 1.38659 * 120.49753 * 0.02562 * 13 12 11 15 15 C 1.37591 * 120.24814 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12406 * 84.72361 * 11 10 8 17 17 C 1.41394 * 120.24704 * 0.02562 * 16 11 10 18 18 H 1.07999 * 119.99576 * 333.89506 * 17 16 11 19 19 C 1.39936 * 120.00084 * 153.89383 * 17 16 11 20 20 N 1.30823 * 120.00218 * 343.71483 * 19 17 16 21 21 Si 1.86806 * 120.00088 * 163.71714 * 19 17 16 22 22 H 1.48497 * 109.46918 * 60.00210 * 21 19 17 23 23 H 1.48502 * 109.47252 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46900 * 300.00273 * 21 19 17 25 25 H 1.08996 * 109.47102 * 300.00506 * 1 2 3 26 26 H 1.09007 * 109.47056 * 60.00051 * 1 2 3 27 27 H 1.08998 * 109.47616 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46906 * 239.99868 * 2 1 3 29 29 H 1.08996 * 109.47488 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46939 * 300.00021 * 3 2 1 31 31 H 1.08996 * 109.47371 * 59.99659 * 3 2 1 32 32 H 1.09003 * 109.46840 * 59.99870 * 6 4 2 33 33 H 1.09006 * 109.46868 * 300.00366 * 6 4 2 34 34 H 1.09000 * 109.47361 * 300.00222 * 10 8 7 35 35 H 1.08997 * 109.47049 * 60.00152 * 10 8 7 36 36 H 1.08005 * 119.87632 * 359.97438 * 12 11 10 37 37 H 1.07993 * 119.74862 * 180.02562 * 13 12 11 38 38 H 1.07998 * 119.87354 * 180.02562 * 14 13 12 39 39 H 1.08008 * 120.12341 * 179.97438 * 15 14 13 40 40 H 0.97001 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3399 -0.7702 2.2181 6 6 3.3985 -1.3462 1.2285 7 8 3.6480 -1.9616 2.5197 8 6 4.8298 -2.5763 2.6838 9 8 5.6298 -2.5990 1.7785 10 6 5.1591 -3.2381 3.9970 11 6 6.5345 -3.8493 3.9207 12 6 6.6831 -5.1772 3.5906 13 6 7.9471 -5.7418 3.5192 14 6 9.0747 -4.9780 3.7791 15 6 8.9499 -3.6488 4.1120 16 6 7.6721 -3.0631 4.1808 17 6 7.5320 -1.6965 4.5155 18 1 6.6660 -1.1447 4.1809 19 6 8.5153 -1.0591 5.2803 20 7 9.3864 -1.7697 5.9494 21 14 8.5842 0.8065 5.3459 22 1 7.3075 1.3299 5.8948 23 1 9.7083 1.2300 6.2190 24 1 8.7911 1.3426 3.9766 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 4.1538 -0.5837 1.0379 33 1 3.4445 -2.1062 0.4484 34 1 5.1358 -2.4952 4.7943 35 1 4.4259 -4.0174 4.2050 36 1 5.8116 -5.7816 3.3866 37 1 8.0543 -6.7845 3.2591 38 1 10.0546 -5.4281 3.7201 39 1 9.8296 -3.0558 4.3145 40 1 10.0683 -1.3279 6.4793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777167770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = -134.828942 kcal Electronic energy + Delta-G solvation = -22588.708661 eV Core-core repulsion = 19139.298895 eV Total energy + Delta-G solvation = -3449.409766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.70899 -40.63304 -39.38419 -37.32266 -35.54190 -35.53564 -33.63523 -31.40315 -30.59857 -28.63942 -28.00608 -26.94696 -24.33850 -22.88096 -22.61800 -21.13518 -20.25818 -19.10670 -18.66922 -17.91088 -17.80705 -17.16797 -16.81460 -16.29609 -16.11889 -15.66202 -15.44021 -15.37645 -14.88425 -14.39964 -14.06509 -13.82131 -13.63608 -13.58690 -13.39289 -13.15683 -12.97673 -12.95419 -12.81893 -12.76481 -12.54010 -12.14148 -12.11648 -11.97706 -11.80286 -11.52795 -11.36736 -11.27692 -11.05539 -10.63553 -9.26437 -9.24187 -8.63326 -6.34952 0.77999 0.88714 1.07779 1.28982 1.34815 1.44871 1.52467 1.66640 2.18051 2.74392 2.89995 3.70700 3.74160 3.93453 4.00369 4.07509 4.12631 4.14450 4.32963 4.36596 4.53800 4.55287 4.68719 4.74148 4.75219 4.83348 4.88755 4.97703 5.05590 5.15513 5.26644 5.28393 5.31771 5.35295 5.50262 5.72912 5.99847 6.11435 6.18924 6.35637 6.37582 6.68601 6.84792 6.94241 7.05773 8.32870 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.004454 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.912637 B = 6285.148716 C = 7652.404255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C -0.144 4.144 4 C 0.366 3.634 5 O -0.468 6.468 6 C -0.002 4.002 7 O -0.357 6.357 8 C 0.468 3.532 9 O -0.523 6.523 10 C -0.043 4.043 11 C -0.202 4.202 12 C -0.085 4.085 13 C -0.240 4.240 14 C -0.112 4.112 15 C -0.191 4.191 16 C 0.099 3.901 17 C -0.488 4.488 18 H 0.068 0.932 19 C 0.039 3.961 20 N -0.822 5.822 21 Si 0.969 3.031 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.266 1.266 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.054 0.946 28 H 0.129 0.871 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.588 4.691 -10.348 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.148 4.148 3 C -0.201 4.201 4 C 0.241 3.759 5 O -0.342 6.342 6 C -0.076 4.076 7 O -0.274 6.274 8 C 0.312 3.688 9 O -0.411 6.411 10 C -0.080 4.080 11 C -0.203 4.203 12 C -0.103 4.103 13 C -0.259 4.259 14 C -0.130 4.130 15 C -0.211 4.211 16 C 0.097 3.903 17 C -0.517 4.517 18 H 0.087 0.913 19 C -0.176 4.176 20 N -0.448 5.448 21 Si 0.790 3.210 22 H -0.183 1.183 23 H -0.188 1.188 24 H -0.190 1.190 25 H 0.068 0.932 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.138 0.862 34 H 0.122 0.878 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.543 4.689 -9.931 16.671 hybrid contribution 0.676 0.648 0.165 0.951 sum -11.866 5.336 -9.765 16.268 Atomic orbital electron populations 1.21736 0.92251 1.02606 1.03201 1.21698 0.98529 0.98401 0.96183 1.21805 1.01886 0.92641 1.03804 1.25104 0.85507 0.75562 0.89714 1.90417 1.57388 1.50003 1.36351 1.23813 0.98710 1.00022 0.85040 1.86609 1.37677 1.65814 1.37337 1.24406 0.78173 0.75125 0.91097 1.90624 1.49116 1.57335 1.44035 1.20000 0.95915 1.00674 0.91406 1.19430 0.92670 0.94199 1.14040 1.20762 0.97130 0.94169 0.98195 1.20741 0.92555 0.99689 1.12953 1.20996 0.98069 0.94364 0.99569 1.21319 0.97552 0.95321 1.06862 1.17708 0.91262 0.93128 0.88174 1.19612 1.06501 0.95505 1.30108 0.91342 1.26633 0.93528 1.04948 0.92474 1.69857 1.14210 1.39736 1.20970 0.85448 0.79347 0.77005 0.79197 1.18265 1.18837 1.19020 0.93187 0.89050 0.92663 0.85263 0.91567 0.88560 0.93114 0.87233 0.86186 0.87830 0.85942 0.86229 0.86329 0.87336 0.88247 0.90146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.73 71.98 0.63 -1.34 16 2 C -0.13 -1.87 3.18 -11.54 -0.04 -1.90 16 3 C -0.14 -1.82 9.18 71.98 0.66 -1.16 16 4 C 0.37 8.67 6.35 29.10 0.18 8.86 16 5 O -0.47 -14.85 16.24 17.37 0.28 -14.57 16 6 C 0.00 -0.05 5.88 71.23 0.42 0.37 16 7 O -0.36 -12.65 9.75 -44.99 -0.44 -13.09 16 8 C 0.47 18.86 7.57 71.23 0.54 19.40 16 9 O -0.52 -23.91 15.78 21.95 0.35 -23.56 16 10 C -0.04 -1.73 5.29 29.10 0.15 -1.58 16 11 C -0.20 -9.64 4.43 -19.40 -0.09 -9.73 16 12 C -0.08 -3.71 9.66 22.22 0.21 -3.50 16 13 C -0.24 -10.57 10.05 22.46 0.23 -10.35 16 14 C -0.11 -5.33 10.02 22.22 0.22 -5.11 16 15 C -0.19 -10.35 8.68 22.73 0.20 -10.15 16 16 C 0.10 5.39 5.56 -21.29 -0.12 5.28 16 17 C -0.49 -26.29 8.14 23.46 0.19 -26.10 16 18 H 0.07 3.61 6.67 -2.91 -0.02 3.59 16 19 C 0.04 2.01 5.16 85.25 0.44 2.45 16 20 N -0.82 -43.19 10.95 21.82 0.24 -42.96 16 21 Si 0.97 38.91 29.59 68.60 2.03 40.94 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H 0.05 0.87 7.87 -2.39 -0.02 0.85 16 26 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 2.73 8.13 -2.39 -0.02 2.71 16 33 H 0.12 2.68 8.13 -2.38 -0.02 2.66 16 34 H 0.10 4.28 7.08 -2.39 -0.02 4.27 16 35 H 0.12 4.04 8.05 -2.39 -0.02 4.02 16 36 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.11 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.10 5.62 6.20 -2.91 -0.02 5.60 16 40 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 Total: -1.00 -68.64 344.99 7.33 -61.32 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 1.03 Total: 26.48 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.84 Total: -34.56 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.24 Total: -42.96 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: 0.19 Total: -51.22 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -68.64 7.33 -61.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777167770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.512 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds