Wall clock time and date at job start Tue Mar 31 2020 06:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00249 * 2 1 4 4 C 1.53000 * 109.47463 * 180.02562 * 3 2 1 5 5 C 1.50695 * 115.54759 * 34.42067 * 4 3 2 6 6 O 1.20829 * 120.00194 * 145.58292 * 5 4 3 7 7 O 1.34237 * 120.00053 * 325.58436 * 5 4 3 8 8 C 1.45205 * 116.99704 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46527 * 179.97438 * 8 7 5 10 10 C 1.38637 * 119.74784 * 269.72849 * 9 8 7 11 11 C 1.37621 * 120.24896 * 179.72771 * 10 9 8 12 12 C 1.40716 * 119.74082 * 0.56274 * 11 10 9 13 13 C 1.41396 * 120.24137 * 179.68567 * 12 11 10 14 14 H 1.07994 * 120.00025 * 24.40748 * 13 12 11 15 15 C 1.39943 * 120.00077 * 204.40677 * 13 12 11 16 16 N 1.30827 * 119.99771 * 17.86245 * 15 13 12 17 17 Si 1.86796 * 120.00167 * 197.86727 * 15 13 12 18 18 H 1.48497 * 109.47105 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47212 * 119.99934 * 17 15 13 20 20 H 1.48504 * 109.47284 * 239.99682 * 17 15 13 21 21 C 1.40713 * 119.51077 * 359.71151 * 12 11 10 22 22 C 1.37613 * 119.74884 * 359.97438 * 21 12 11 23 23 C 1.53002 * 117.50316 * 248.75092 * 4 3 2 24 24 C 1.52999 * 117.50009 * 180.08955 * 4 3 2 25 25 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47244 * 59.99758 * 1 2 3 27 27 H 1.09006 * 109.46845 * 299.99818 * 1 2 3 28 28 H 1.09004 * 109.47626 * 300.00385 * 3 2 1 29 29 H 1.09007 * 109.46995 * 60.00160 * 3 2 1 30 30 H 1.09001 * 109.47273 * 299.99636 * 8 7 5 31 31 H 1.08996 * 109.46978 * 60.00241 * 8 7 5 32 32 H 1.08007 * 119.87558 * 359.97438 * 10 9 8 33 33 H 1.07993 * 120.12708 * 180.27717 * 11 10 9 34 34 H 0.96999 * 120.00033 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.12438 * 179.97438 * 21 12 11 36 36 H 1.08000 * 119.88008 * 180.02562 * 22 21 12 37 37 H 1.08998 * 117.49519 * 359.97438 * 23 4 3 38 38 H 1.08994 * 117.49953 * 145.01951 * 23 4 3 39 39 H 1.09007 * 117.49681 * 214.97914 * 24 4 3 40 40 H 1.09000 * 117.49770 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0945 0.0154 -0.7696 6 8 5.1455 0.1246 -1.3556 7 8 3.4248 -1.1475 -0.8037 8 6 4.0225 -2.2304 -1.5643 9 6 3.1360 -3.4467 -1.4880 10 6 3.3229 -4.3716 -0.4723 11 6 2.5156 -5.4831 -0.3896 12 6 1.5052 -5.6849 -1.3481 13 6 0.6741 -6.8266 -1.2771 14 1 0.5235 -7.3269 -0.3319 15 6 0.0467 -7.3083 -2.4315 16 7 0.4805 -6.9458 -3.6114 17 14 -1.4102 -8.4685 -2.2879 18 1 -1.7023 -8.7211 -0.8541 19 1 -2.5978 -7.8541 -2.9337 20 1 -1.0890 -9.7522 -2.9619 21 6 1.3285 -4.7424 -2.3779 22 6 2.1432 -3.6349 -2.4372 23 6 4.2792 1.6189 1.2640 24 6 4.3469 2.4817 0.0014 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8463 0.8901 30 1 4.1331 -1.9256 -2.6049 31 1 5.0018 -2.4685 -1.1492 32 1 4.1023 -4.2172 0.2592 33 1 2.6600 -6.2000 0.4050 34 1 0.0459 -7.2800 -4.4116 35 1 0.5563 -4.8877 -3.1190 36 1 2.0092 -2.9100 -3.2264 37 1 3.6818 1.9911 2.0963 38 1 5.1729 1.0592 1.5395 39 1 5.2853 2.4892 -0.5532 40 1 3.7941 3.4211 0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779257159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:36 Heat of formation + Delta-G solvation = -88.204767 kcal Electronic energy + Delta-G solvation = -22734.647837 eV Core-core repulsion = 19287.259847 eV Total energy + Delta-G solvation = -3447.387990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.34932 -38.18578 -37.53086 -36.66128 -35.52103 -33.79498 -30.73524 -29.30073 -28.43396 -27.17093 -25.54543 -24.42368 -23.01126 -22.74086 -21.01247 -19.97020 -19.51454 -17.40169 -17.32935 -16.71364 -16.04074 -15.75982 -15.45491 -15.18462 -15.05995 -14.40788 -13.96946 -13.72472 -13.61716 -12.98205 -12.71157 -12.52796 -12.25263 -11.98256 -11.93625 -11.74480 -11.49311 -11.20206 -11.19853 -11.09415 -10.87210 -10.59214 -10.52866 -10.44246 -10.07380 -9.97948 -9.60907 -9.48814 -9.40513 -9.16309 -7.48542 -7.37961 -6.81850 -4.40434 2.36605 2.52082 2.97480 3.04681 3.08257 3.10630 3.38175 3.52075 3.80114 3.89373 4.52754 4.55238 4.64616 4.79852 5.00079 5.17231 5.35773 5.36533 5.44994 5.52962 5.59031 5.65892 5.71245 5.77541 5.82900 5.86183 5.94607 6.19238 6.33622 6.38890 6.92537 6.99712 7.03129 7.25472 7.27972 7.33347 7.58450 7.81312 8.02027 8.09086 8.25068 8.25655 8.60189 8.84699 8.93382 10.12360 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.003604 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.732698 B = 7766.656179 C = 8279.600013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.355 6.355 3 C 0.100 3.900 4 C -0.142 4.142 5 C 0.496 3.504 6 O -0.528 6.528 7 O -0.313 6.313 8 C 0.131 3.869 9 C -0.225 4.225 10 C -0.064 4.064 11 C -0.230 4.230 12 C 0.118 3.882 13 C -0.458 4.458 14 H 0.079 0.921 15 C 0.076 3.924 16 N -0.788 5.788 17 Si 0.908 3.092 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.170 4.170 22 C -0.074 4.074 23 C -0.143 4.143 24 C -0.138 4.138 25 H 0.092 0.908 26 H 0.037 0.963 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.281 0.719 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 14.784 5.776 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.023 3.977 4 C -0.143 4.143 5 C 0.340 3.660 6 O -0.419 6.419 7 O -0.227 6.227 8 C 0.059 3.941 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.249 4.249 12 C 0.116 3.884 13 C -0.488 4.488 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.413 5.413 17 Si 0.732 3.268 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.189 4.189 22 C -0.092 4.092 23 C -0.180 4.180 24 C -0.175 4.175 25 H 0.111 0.889 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.131 0.869 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.922 14.526 5.329 15.500 hybrid contribution -0.755 -0.392 -0.197 0.873 sum 0.167 14.135 5.132 15.039 Atomic orbital electron populations 1.22753 0.81157 1.03468 0.99018 1.88237 1.19138 1.24823 1.95101 1.21870 0.88850 0.86693 1.00334 1.21019 0.94518 0.94861 1.03905 1.22098 0.82020 0.84002 0.77903 1.90609 1.23605 1.84107 1.43613 1.86887 1.50032 1.19667 1.66121 1.21728 0.95032 0.83369 0.94004 1.18637 1.05108 0.96549 1.02300 1.20373 0.97803 0.94453 0.95614 1.20936 1.00098 0.99921 1.03957 1.17667 0.89112 0.91470 0.90173 1.19680 1.23867 1.09974 0.95236 0.90245 1.25948 0.97099 0.96488 0.94726 1.69840 1.35444 1.37238 0.98779 0.86264 0.80992 0.79692 0.79822 1.18322 1.19647 1.19948 1.21275 1.01628 0.94058 1.01986 1.20509 0.95006 0.96913 0.96791 1.23187 1.01975 1.01948 0.90917 1.23145 1.01625 0.92275 1.00461 0.88925 0.94472 0.94644 0.92774 0.92553 0.92322 0.92438 0.89424 0.88830 0.90805 0.86348 0.89477 0.87242 0.87844 0.86857 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -5.55 8.35 -57.99 -0.48 -6.04 16 3 C 0.10 1.19 6.06 37.16 0.23 1.42 16 4 C -0.14 -1.84 2.54 -155.66 -0.39 -2.24 16 5 C 0.50 8.71 7.48 36.00 0.27 8.98 16 6 O -0.53 -10.15 16.01 -18.75 -0.30 -10.45 16 7 O -0.31 -6.21 7.96 -46.83 -0.37 -6.58 16 8 C 0.13 2.67 5.58 36.01 0.20 2.87 16 9 C -0.22 -5.16 5.54 -104.33 -0.58 -5.74 16 10 C -0.06 -1.48 9.67 -39.66 -0.38 -1.87 16 11 C -0.23 -5.70 9.80 -38.87 -0.38 -6.08 16 12 C 0.12 3.15 5.58 -106.82 -0.60 2.56 16 13 C -0.46 -12.05 9.05 -37.74 -0.34 -12.40 16 14 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 15 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 16 N -0.79 -20.12 10.95 55.55 0.61 -19.51 16 17 Si 0.91 18.33 29.60 -169.99 -5.03 13.30 16 18 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 C -0.17 -4.43 8.70 -38.88 -0.34 -4.77 16 22 C -0.07 -1.77 9.67 -39.66 -0.38 -2.15 16 23 C -0.14 -1.43 9.88 -26.69 -0.26 -1.69 16 24 C -0.14 -1.33 9.77 -26.69 -0.26 -1.59 16 25 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.52 7.90 -51.92 -0.41 0.11 16 30 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 34 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 35 H 0.12 3.16 6.16 -52.48 -0.32 2.84 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.11 0.83 8.05 -51.93 -0.42 0.42 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.11 1.20 7.67 -51.93 -0.40 0.80 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -30.08 344.80 -8.33 -38.40 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.74 Total: 5.06 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.20 Total: -19.39 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.61 Total: -19.51 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -1.16 Total: -23.07 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.08 -8.33 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779257159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.801 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds