Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 114.00249 * 2 1 4 4 C 1.53000 * 109.47463 * 180.02562 * 3 2 1 5 5 C 1.50695 * 115.54759 * 34.42067 * 4 3 2 6 6 O 1.20829 * 120.00194 * 145.58292 * 5 4 3 7 7 O 1.34237 * 120.00053 * 325.58436 * 5 4 3 8 8 C 1.45205 * 116.99704 * 179.97438 * 7 5 4 9 9 C 1.50704 * 109.46527 * 179.97438 * 8 7 5 10 10 C 1.38637 * 119.74784 * 269.72849 * 9 8 7 11 11 C 1.37621 * 120.24896 * 179.72771 * 10 9 8 12 12 C 1.40716 * 119.74082 * 0.56274 * 11 10 9 13 13 C 1.41396 * 120.24137 * 179.68567 * 12 11 10 14 14 H 1.07994 * 120.00025 * 24.40748 * 13 12 11 15 15 C 1.39943 * 120.00077 * 204.40677 * 13 12 11 16 16 N 1.30827 * 119.99771 * 17.86245 * 15 13 12 17 17 Si 1.86796 * 120.00167 * 197.86727 * 15 13 12 18 18 H 1.48497 * 109.47105 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47212 * 119.99934 * 17 15 13 20 20 H 1.48504 * 109.47284 * 239.99682 * 17 15 13 21 21 C 1.40713 * 119.51077 * 359.71151 * 12 11 10 22 22 C 1.37613 * 119.74884 * 359.97438 * 21 12 11 23 23 C 1.53002 * 117.50316 * 248.75092 * 4 3 2 24 24 C 1.52999 * 117.50009 * 180.08955 * 4 3 2 25 25 H 1.08995 * 109.47282 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47244 * 59.99758 * 1 2 3 27 27 H 1.09006 * 109.46845 * 299.99818 * 1 2 3 28 28 H 1.09004 * 109.47626 * 300.00385 * 3 2 1 29 29 H 1.09007 * 109.46995 * 60.00160 * 3 2 1 30 30 H 1.09001 * 109.47273 * 299.99636 * 8 7 5 31 31 H 1.08996 * 109.46978 * 60.00241 * 8 7 5 32 32 H 1.08007 * 119.87558 * 359.97438 * 10 9 8 33 33 H 1.07993 * 120.12708 * 180.27717 * 11 10 9 34 34 H 0.96999 * 120.00033 * 179.97438 * 16 15 13 35 35 H 1.08007 * 120.12438 * 179.97438 * 21 12 11 36 36 H 1.08000 * 119.88008 * 180.02562 * 22 21 12 37 37 H 1.08998 * 117.49519 * 359.97438 * 23 4 3 38 38 H 1.08994 * 117.49953 * 145.01951 * 23 4 3 39 39 H 1.09007 * 117.49681 * 214.97914 * 24 4 3 40 40 H 1.09000 * 117.49770 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0945 0.0154 -0.7696 6 8 5.1455 0.1246 -1.3556 7 8 3.4248 -1.1475 -0.8037 8 6 4.0225 -2.2304 -1.5643 9 6 3.1360 -3.4467 -1.4880 10 6 3.3229 -4.3716 -0.4723 11 6 2.5156 -5.4831 -0.3896 12 6 1.5052 -5.6849 -1.3481 13 6 0.6741 -6.8266 -1.2771 14 1 0.5235 -7.3269 -0.3319 15 6 0.0467 -7.3083 -2.4315 16 7 0.4805 -6.9458 -3.6114 17 14 -1.4102 -8.4685 -2.2879 18 1 -1.7023 -8.7211 -0.8541 19 1 -2.5978 -7.8541 -2.9337 20 1 -1.0890 -9.7522 -2.9619 21 6 1.3285 -4.7424 -2.3779 22 6 2.1432 -3.6349 -2.4372 23 6 4.2792 1.6189 1.2640 24 6 4.3469 2.4817 0.0014 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 1.6886 1.8463 0.8901 30 1 4.1331 -1.9256 -2.6049 31 1 5.0018 -2.4685 -1.1492 32 1 4.1023 -4.2172 0.2592 33 1 2.6600 -6.2000 0.4050 34 1 0.0459 -7.2800 -4.4116 35 1 0.5563 -4.8877 -3.1190 36 1 2.0092 -2.9100 -3.2264 37 1 3.6818 1.9911 2.0963 38 1 5.1729 1.0592 1.5395 39 1 5.2853 2.4892 -0.5532 40 1 3.7941 3.4211 0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779257159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = -102.939117 kcal Electronic energy + Delta-G solvation = -22735.286766 eV Core-core repulsion = 19287.259847 eV Total energy + Delta-G solvation = -3448.026919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.65623 -39.63340 -38.99452 -37.87146 -36.82773 -35.66303 -32.58224 -31.22932 -29.49021 -28.80856 -26.57462 -25.94516 -24.47846 -23.48044 -22.94461 -21.83209 -20.75060 -19.26564 -18.59714 -17.98026 -17.41738 -17.13519 -16.84061 -16.42198 -16.20714 -15.82939 -15.61320 -15.38267 -14.85450 -14.44839 -14.15243 -13.95716 -13.85741 -13.49303 -13.37623 -13.04931 -13.01695 -12.78672 -12.47430 -12.39432 -12.26376 -12.13208 -11.69100 -11.61371 -11.56794 -11.35548 -11.32644 -11.26342 -11.02786 -10.42201 -9.42640 -9.32308 -8.68239 -6.38472 0.75203 1.09993 1.12200 1.38763 1.43753 1.54750 1.95663 2.20257 2.57480 2.72181 2.92693 3.62817 3.71240 3.76691 3.86314 3.95323 4.09314 4.10477 4.37719 4.45112 4.47851 4.52661 4.54663 4.55539 4.67199 4.67681 4.80490 4.89963 4.95729 4.99916 5.12570 5.14706 5.30715 5.40123 5.57167 5.65627 5.89264 6.06099 6.15962 6.32207 6.35692 6.64807 6.84351 6.89421 6.98039 8.29052 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.003604 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.732698 B = 7766.656179 C = 8279.600013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.397 6.397 3 C 0.099 3.901 4 C -0.172 4.172 5 C 0.489 3.511 6 O -0.552 6.552 7 O -0.326 6.326 8 C 0.136 3.864 9 C -0.222 4.222 10 C -0.066 4.066 11 C -0.244 4.244 12 C 0.089 3.911 13 C -0.494 4.494 14 H 0.079 0.921 15 C 0.036 3.964 16 N -0.820 5.820 17 Si 0.985 3.015 18 H -0.257 1.257 19 H -0.263 1.263 20 H -0.265 1.265 21 C -0.190 4.190 22 C -0.078 4.078 23 C -0.130 4.130 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.290 0.710 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 16.539 6.928 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.316 6.316 3 C 0.022 3.978 4 C -0.173 4.173 5 C 0.335 3.665 6 O -0.445 6.445 7 O -0.240 6.240 8 C 0.063 3.937 9 C -0.223 4.223 10 C -0.085 4.085 11 C -0.263 4.263 12 C 0.087 3.913 13 C -0.523 4.523 14 H 0.097 0.903 15 C -0.180 4.180 16 N -0.445 5.445 17 Si 0.805 3.195 18 H -0.180 1.180 19 H -0.188 1.188 20 H -0.190 1.190 21 C -0.210 4.210 22 C -0.097 4.097 23 C -0.167 4.167 24 C -0.154 4.154 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.478 16.305 6.487 17.554 hybrid contribution -0.484 -0.804 -0.547 1.087 sum -0.006 15.500 5.940 16.599 Atomic orbital electron populations 1.22785 0.80184 1.02657 1.00866 1.88167 1.20515 1.27402 1.95468 1.22079 0.87803 0.85553 1.02347 1.21236 0.95599 0.94431 1.06011 1.23054 0.81632 0.84145 0.77695 1.90587 1.24717 1.84399 1.44802 1.86874 1.50576 1.20466 1.66115 1.21519 0.94607 0.83067 0.94475 1.18918 1.04463 0.97476 1.01433 1.20660 0.97955 0.93768 0.96073 1.21141 1.00217 1.00866 1.04100 1.18011 0.90105 0.92144 0.91044 1.19931 1.25593 1.10718 0.96027 0.90277 1.26824 0.99359 0.97978 0.93847 1.69883 1.36654 1.38329 0.99651 0.85120 0.77029 0.77455 0.79880 1.18023 1.18766 1.18977 1.21230 1.02356 0.95112 1.02266 1.20699 0.94945 0.96573 0.97462 1.23386 1.01270 1.00898 0.91149 1.23312 1.00564 0.92177 0.99317 0.91161 0.93404 0.91942 0.91914 0.89183 0.92204 0.91615 0.86853 0.87942 0.89914 0.87764 0.88117 0.84125 0.88763 0.88119 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -11.97 8.35 -127.22 -1.06 -13.03 16 3 C 0.10 2.09 6.06 71.98 0.44 2.53 16 4 C -0.17 -4.07 2.54 -52.93 -0.13 -4.20 16 5 C 0.49 16.82 7.48 71.23 0.53 17.35 16 6 O -0.55 -21.03 16.01 21.95 0.35 -20.68 16 7 O -0.33 -12.86 7.96 -44.27 -0.35 -13.21 16 8 C 0.14 5.54 5.58 71.24 0.40 5.93 16 9 C -0.22 -10.26 5.54 -19.67 -0.11 -10.37 16 10 C -0.07 -3.09 9.67 22.22 0.21 -2.87 16 11 C -0.24 -12.35 9.80 22.73 0.22 -12.13 16 12 C 0.09 4.93 5.58 -21.29 -0.12 4.81 16 13 C -0.49 -26.75 9.05 23.46 0.21 -26.54 16 14 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.79 5.14 85.26 0.44 2.23 16 16 N -0.82 -42.83 10.95 21.83 0.24 -42.59 16 17 Si 0.98 37.76 29.60 68.60 2.03 39.79 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 21 C -0.19 -10.29 8.70 22.73 0.20 -10.09 16 22 C -0.08 -3.85 9.67 22.22 0.21 -3.63 16 23 C -0.13 -2.17 9.88 30.62 0.30 -1.87 16 24 C -0.12 -1.87 9.77 30.62 0.30 -1.57 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.09 1.28 7.90 -2.38 -0.02 1.26 16 30 H 0.06 2.38 8.07 -2.39 -0.02 2.37 16 31 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 32 H 0.11 4.60 8.06 -2.91 -0.02 4.57 16 33 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 35 H 0.10 5.83 6.16 -2.91 -0.02 5.82 16 36 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.14 1.47 8.05 -2.39 -0.02 1.45 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 1.90 7.67 -2.38 -0.02 1.89 16 40 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.33 344.80 6.59 -60.74 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.03 Total: 27.39 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 4.36 Total: -38.42 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.24 Total: -42.59 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: -1.06 Total: -46.91 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -67.33 6.59 -60.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779257159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.200 kcal (2) G-P(sol) polarization free energy of solvation -67.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds