Wall clock time and date at job start Tue Mar 31 2020 06:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00198 * 2 1 4 4 C 1.50706 * 112.84690 * 67.62531 * 3 2 1 5 5 O 1.20832 * 119.99626 * 205.72043 * 4 3 2 6 6 O 1.34226 * 120.00174 * 25.71094 * 4 3 2 7 7 C 1.45201 * 116.99940 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46938 * 180.02562 * 7 6 4 9 9 C 1.38641 * 119.74592 * 269.72641 * 8 7 6 10 10 C 1.37621 * 120.24243 * 179.72306 * 9 8 7 11 11 C 1.40709 * 119.74730 * 0.56915 * 10 9 8 12 12 C 1.41394 * 120.24398 * 179.68126 * 11 10 9 13 13 H 1.07996 * 119.99984 * 26.70216 * 12 11 10 14 14 C 1.39942 * 120.00277 * 206.70185 * 12 11 10 15 15 N 1.30825 * 119.99769 * 15.09047 * 14 12 11 16 16 Si 1.86797 * 120.00163 * 195.09655 * 14 12 11 17 17 H 1.48501 * 109.47545 * 89.99780 * 16 14 12 18 18 H 1.48504 * 109.47102 * 209.99867 * 16 14 12 19 19 H 1.48501 * 109.47075 * 329.99447 * 16 14 12 20 20 C 1.40716 * 119.51206 * 359.70540 * 11 10 9 21 21 C 1.37618 * 119.74573 * 359.97438 * 20 11 10 22 22 C 1.53785 * 113.61409 * 296.43139 * 3 2 1 23 23 C 1.53784 * 87.16847 * 270.83541 * 22 3 2 24 24 C 1.53779 * 113.61628 * 198.92881 * 3 2 1 25 25 H 1.09006 * 109.46943 * 65.88413 * 1 2 3 26 26 H 1.08998 * 109.47468 * 185.87817 * 1 2 3 27 27 H 1.09002 * 109.47232 * 305.88112 * 1 2 3 28 28 H 1.09003 * 109.46787 * 299.99936 * 7 6 4 29 29 H 1.09000 * 109.47187 * 60.00218 * 7 6 4 30 30 H 1.08001 * 119.87600 * 359.97438 * 9 8 7 31 31 H 1.08005 * 120.12130 * 180.27671 * 10 9 8 32 32 H 0.97001 * 120.00084 * 180.02562 * 15 14 12 33 33 H 1.07996 * 120.12711 * 179.97438 * 20 11 10 34 34 H 1.07993 * 119.87477 * 179.97438 * 21 20 11 35 35 H 1.08997 * 113.61259 * 25.42856 * 22 3 2 36 36 H 1.09001 * 113.61403 * 156.24662 * 22 3 2 37 37 H 1.09000 * 113.61026 * 89.15927 * 23 22 3 38 38 H 1.08997 * 113.61632 * 220.05842 * 23 22 3 39 39 H 1.09002 * 113.61125 * 203.66046 * 24 3 2 40 40 H 1.08993 * 113.61318 * 334.48559 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7653 2.0551 1.2843 5 8 1.7642 3.2634 1.2877 6 8 1.5482 1.3805 2.4242 7 6 1.3190 2.1677 3.6226 8 6 1.0967 1.2461 4.7940 9 6 -0.1878 0.8288 5.1069 10 6 -0.4019 -0.0173 6.1710 11 6 0.6875 -0.4492 6.9497 12 6 0.4788 -1.3131 8.0494 13 1 -0.3733 -1.9765 8.0608 14 6 1.3764 -1.3085 9.1231 15 7 2.2269 -0.3240 9.2604 16 14 1.3601 -2.7081 10.3601 17 1 2.2886 -3.7765 9.9111 18 1 1.7934 -2.2011 11.6869 19 1 -0.0148 -3.2593 10.4658 20 6 1.9862 -0.0146 6.6264 21 6 2.1776 0.8262 5.5538 22 6 1.6878 2.1234 -1.2618 23 6 2.9481 1.5064 -1.8911 24 6 3.4784 1.3261 -0.4571 25 1 -0.3633 0.4199 -0.9380 26 1 -0.3634 -1.0222 0.1052 27 1 -0.3634 0.6023 0.8327 28 1 2.1879 2.7970 3.8155 29 1 0.4394 2.7958 3.4820 30 1 -1.0231 1.1657 4.5108 31 1 -1.4030 -0.3448 6.4102 32 1 2.8493 -0.3210 10.0044 33 1 2.8295 -0.3396 7.2176 34 1 3.1734 1.1613 5.3040 35 1 0.7624 1.8222 -1.7526 36 1 1.7568 3.2010 -1.1131 37 1 2.7616 0.5657 -2.4091 38 1 3.5283 2.2110 -2.4868 39 1 4.0382 2.1858 -0.0888 40 1 3.9988 0.3819 -0.2971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781822244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:50 Heat of formation + Delta-G solvation = -92.464810 kcal Electronic energy + Delta-G solvation = -22648.465278 eV Core-core repulsion = 19200.892558 eV Total energy + Delta-G solvation = -3447.572719 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.96776 -38.92441 -37.61739 -36.35348 -35.43998 -33.83796 -30.82067 -29.38092 -27.93612 -27.17790 -26.19149 -25.57323 -23.76917 -21.56480 -21.08744 -20.05393 -19.50305 -18.12159 -17.38064 -16.82276 -16.29943 -15.86438 -15.42970 -15.20790 -14.92895 -14.38213 -14.18741 -13.86002 -13.72588 -12.97169 -12.73936 -12.51617 -12.40115 -12.04526 -12.02270 -11.80720 -11.60518 -11.52017 -11.26930 -11.16681 -11.12026 -10.93393 -10.62495 -10.56011 -10.34060 -10.16228 -9.75776 -9.54890 -9.44291 -9.24038 -7.55642 -7.43193 -6.83766 -4.46368 2.25197 2.42581 2.94540 3.00647 3.04134 3.06757 3.29209 3.40898 3.87256 4.14173 4.34380 4.50046 4.51137 4.82848 5.11584 5.17089 5.31974 5.42263 5.48814 5.59603 5.61012 5.64587 5.67165 5.68471 5.71340 5.73618 5.99486 6.05180 6.23833 6.31098 6.78452 6.86953 6.88035 6.99247 7.17676 7.26522 7.52261 7.72917 7.96621 7.99567 8.02018 8.19836 8.54782 8.79673 8.87033 10.10580 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030795 B = 0.003148 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.020039 B = 8891.899526 C = 8980.666441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.341 6.341 3 C 0.093 3.907 4 C 0.445 3.555 5 O -0.515 6.515 6 O -0.337 6.337 7 C 0.131 3.869 8 C -0.231 4.231 9 C -0.065 4.065 10 C -0.228 4.228 11 C 0.119 3.881 12 C -0.458 4.458 13 H 0.080 0.920 14 C 0.074 3.926 15 N -0.791 5.791 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.262 1.262 20 C -0.166 4.166 21 C -0.076 4.076 22 C -0.149 4.149 23 C -0.130 4.130 24 C -0.113 4.113 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.282 0.718 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.680 1.822 -15.936 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.259 6.259 3 C 0.051 3.949 4 C 0.287 3.713 5 O -0.405 6.405 6 O -0.252 6.252 7 C 0.059 3.941 8 C -0.233 4.233 9 C -0.084 4.084 10 C -0.247 4.247 11 C 0.117 3.883 12 C -0.487 4.487 13 H 0.098 0.902 14 C -0.144 4.144 15 N -0.416 5.416 16 Si 0.736 3.264 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.185 4.185 21 C -0.095 4.095 22 C -0.187 4.187 23 C -0.168 4.168 24 C -0.151 4.151 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.952 2.097 -15.697 15.865 hybrid contribution -0.258 -0.169 0.872 0.925 sum 0.694 1.928 -14.825 14.966 Atomic orbital electron populations 1.22867 0.80256 1.03713 1.00171 1.87977 1.20422 1.23245 1.94259 1.22626 0.98523 0.84917 0.88871 1.24239 0.73054 0.87243 0.86755 1.90617 1.47552 1.15332 1.86983 1.86818 1.79245 1.42237 1.16930 1.21768 1.00111 0.92082 0.80151 1.18661 0.94382 1.10900 0.99336 1.20370 0.94559 0.96958 0.96505 1.20967 0.97572 1.05026 1.01143 1.17688 0.90905 0.89093 0.90651 1.19668 1.08857 1.18990 1.01202 0.90203 1.25955 0.93799 0.95843 0.98800 1.69811 1.15863 1.27579 1.28318 0.86251 0.79868 0.81284 0.78986 1.19167 1.20234 1.18552 1.21302 0.97710 1.01859 0.97636 1.20541 0.95835 0.97495 0.95604 1.23532 0.99778 1.01305 0.94041 1.22795 0.96465 1.01619 0.95888 1.23025 0.91901 1.04276 0.95849 0.93819 0.88648 0.93325 0.92006 0.92190 0.89411 0.88691 0.90695 0.86231 0.89317 0.90076 0.87594 0.89180 0.90337 0.88102 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.59 101.05 1.07 1.37 16 2 O -0.34 -4.77 10.36 -47.38 -0.49 -5.26 16 3 C 0.09 1.23 1.18 -90.96 -0.11 1.13 16 4 C 0.44 7.47 6.41 36.01 0.23 7.70 16 5 O -0.51 -9.33 15.78 -18.75 -0.30 -9.63 16 6 O -0.34 -6.47 9.65 -44.01 -0.42 -6.89 16 7 C 0.13 2.57 5.58 36.01 0.20 2.77 16 8 C -0.23 -5.22 5.54 -104.33 -0.58 -5.79 16 9 C -0.07 -1.48 9.67 -39.66 -0.38 -1.87 16 10 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 11 C 0.12 3.16 5.56 -106.83 -0.59 2.56 16 12 C -0.46 -11.97 9.06 -37.74 -0.34 -12.31 16 13 H 0.08 2.00 7.89 -52.49 -0.41 1.58 16 14 C 0.07 1.83 5.18 -17.34 -0.09 1.74 16 15 N -0.79 -20.13 10.94 55.55 0.61 -19.52 16 16 Si 0.91 18.33 29.59 -169.99 -5.03 13.30 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 C -0.17 -4.30 8.68 -38.87 -0.34 -4.64 16 21 C -0.08 -1.81 9.67 -39.66 -0.38 -2.19 16 22 C -0.15 -1.54 7.07 -25.92 -0.18 -1.73 16 23 C -0.13 -1.12 8.03 -25.83 -0.21 -1.33 16 24 C -0.11 -1.22 7.47 -25.83 -0.19 -1.42 16 25 H 0.04 0.40 6.79 -51.93 -0.35 0.05 16 26 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.64 7.16 -51.93 -0.37 0.27 16 28 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 29 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 32 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 33 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 34 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.08 0.74 6.70 -51.93 -0.35 0.39 16 36 H 0.11 1.15 7.37 -51.93 -0.38 0.76 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -28.96 338.54 -8.36 -37.31 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.55 Total: 5.50 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.28 Total: -19.92 kcal Atomic # 7 Polarization: -20.13 SS G_CDS: 0.61 Total: -19.52 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -1.21 Total: -21.78 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.96 -8.36 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781822244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.151 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds