Wall clock time and date at job start Tue Mar 31 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00198 * 2 1 4 4 C 1.50706 * 112.84690 * 67.62531 * 3 2 1 5 5 O 1.20832 * 119.99626 * 205.72043 * 4 3 2 6 6 O 1.34226 * 120.00174 * 25.71094 * 4 3 2 7 7 C 1.45201 * 116.99940 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46938 * 180.02562 * 7 6 4 9 9 C 1.38641 * 119.74592 * 269.72641 * 8 7 6 10 10 C 1.37621 * 120.24243 * 179.72306 * 9 8 7 11 11 C 1.40709 * 119.74730 * 0.56915 * 10 9 8 12 12 C 1.41394 * 120.24398 * 179.68126 * 11 10 9 13 13 H 1.07996 * 119.99984 * 26.70216 * 12 11 10 14 14 C 1.39942 * 120.00277 * 206.70185 * 12 11 10 15 15 N 1.30825 * 119.99769 * 15.09047 * 14 12 11 16 16 Si 1.86797 * 120.00163 * 195.09655 * 14 12 11 17 17 H 1.48501 * 109.47545 * 89.99780 * 16 14 12 18 18 H 1.48504 * 109.47102 * 209.99867 * 16 14 12 19 19 H 1.48501 * 109.47075 * 329.99447 * 16 14 12 20 20 C 1.40716 * 119.51206 * 359.70540 * 11 10 9 21 21 C 1.37618 * 119.74573 * 359.97438 * 20 11 10 22 22 C 1.53785 * 113.61409 * 296.43139 * 3 2 1 23 23 C 1.53784 * 87.16847 * 270.83541 * 22 3 2 24 24 C 1.53779 * 113.61628 * 198.92881 * 3 2 1 25 25 H 1.09006 * 109.46943 * 65.88413 * 1 2 3 26 26 H 1.08998 * 109.47468 * 185.87817 * 1 2 3 27 27 H 1.09002 * 109.47232 * 305.88112 * 1 2 3 28 28 H 1.09003 * 109.46787 * 299.99936 * 7 6 4 29 29 H 1.09000 * 109.47187 * 60.00218 * 7 6 4 30 30 H 1.08001 * 119.87600 * 359.97438 * 9 8 7 31 31 H 1.08005 * 120.12130 * 180.27671 * 10 9 8 32 32 H 0.97001 * 120.00084 * 180.02562 * 15 14 12 33 33 H 1.07996 * 120.12711 * 179.97438 * 20 11 10 34 34 H 1.07993 * 119.87477 * 179.97438 * 21 20 11 35 35 H 1.08997 * 113.61259 * 25.42856 * 22 3 2 36 36 H 1.09001 * 113.61403 * 156.24662 * 22 3 2 37 37 H 1.09000 * 113.61026 * 89.15927 * 23 22 3 38 38 H 1.08997 * 113.61632 * 220.05842 * 23 22 3 39 39 H 1.09002 * 113.61125 * 203.66046 * 24 3 2 40 40 H 1.08993 * 113.61318 * 334.48559 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7653 2.0551 1.2843 5 8 1.7642 3.2634 1.2877 6 8 1.5482 1.3805 2.4242 7 6 1.3190 2.1677 3.6226 8 6 1.0967 1.2461 4.7940 9 6 -0.1878 0.8288 5.1069 10 6 -0.4019 -0.0173 6.1710 11 6 0.6875 -0.4492 6.9497 12 6 0.4788 -1.3131 8.0494 13 1 -0.3733 -1.9765 8.0608 14 6 1.3764 -1.3085 9.1231 15 7 2.2269 -0.3240 9.2604 16 14 1.3601 -2.7081 10.3601 17 1 2.2886 -3.7765 9.9111 18 1 1.7934 -2.2011 11.6869 19 1 -0.0148 -3.2593 10.4658 20 6 1.9862 -0.0146 6.6264 21 6 2.1776 0.8262 5.5538 22 6 1.6878 2.1234 -1.2618 23 6 2.9481 1.5064 -1.8911 24 6 3.4784 1.3261 -0.4571 25 1 -0.3633 0.4199 -0.9380 26 1 -0.3634 -1.0222 0.1052 27 1 -0.3634 0.6023 0.8327 28 1 2.1879 2.7970 3.8155 29 1 0.4394 2.7958 3.4820 30 1 -1.0231 1.1657 4.5108 31 1 -1.4030 -0.3448 6.4102 32 1 2.8493 -0.3210 10.0044 33 1 2.8295 -0.3396 7.2176 34 1 3.1734 1.1613 5.3040 35 1 0.7624 1.8222 -1.7526 36 1 1.7568 3.2010 -1.1131 37 1 2.7616 0.5657 -2.4091 38 1 3.5283 2.2110 -2.4868 39 1 4.0382 2.1858 -0.0888 40 1 3.9988 0.3819 -0.2971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781822244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:49 Heat of formation + Delta-G solvation = -106.590959 kcal Electronic energy + Delta-G solvation = -22649.077833 eV Core-core repulsion = 19200.892558 eV Total energy + Delta-G solvation = -3448.185275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14015 -40.17342 -39.37385 -37.70560 -36.49453 -35.67830 -32.63560 -31.27622 -29.35114 -28.38306 -27.29497 -26.49778 -25.43680 -22.99816 -22.73587 -21.86046 -20.46212 -19.34962 -19.27454 -18.16125 -17.60462 -17.18510 -16.89057 -16.32693 -16.26803 -15.75140 -15.52999 -15.38212 -15.11763 -14.51236 -14.16698 -14.05832 -13.89724 -13.43074 -13.36536 -13.08283 -12.96497 -12.82356 -12.77789 -12.48573 -12.42052 -12.21622 -11.99820 -11.79384 -11.71966 -11.54613 -11.32394 -11.30343 -11.08766 -10.66249 -9.46500 -9.34271 -8.68447 -6.42450 0.69361 0.95696 1.07432 1.37925 1.43251 1.51819 1.85313 2.19098 2.43231 2.70245 3.26330 3.46300 3.54908 3.70802 3.75089 4.02003 4.03757 4.22919 4.35645 4.38126 4.43393 4.45561 4.50565 4.60888 4.70128 4.80337 4.90450 4.91034 4.97019 5.02996 5.10346 5.26170 5.27916 5.35666 5.40214 5.62472 5.83904 5.90271 6.03327 6.10042 6.29076 6.61810 6.65454 6.86819 6.94230 8.28659 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030795 B = 0.003148 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.020039 B = 8891.899526 C = 8980.666441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.356 6.356 3 C 0.080 3.920 4 C 0.442 3.558 5 O -0.531 6.531 6 O -0.352 6.352 7 C 0.136 3.864 8 C -0.228 4.228 9 C -0.067 4.067 10 C -0.241 4.241 11 C 0.089 3.911 12 C -0.494 4.494 13 H 0.080 0.920 14 C 0.034 3.966 15 N -0.823 5.823 16 Si 0.987 3.013 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.257 1.257 20 C -0.188 4.188 21 C -0.083 4.083 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.028 0.972 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.290 0.710 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.580 1.664 -17.694 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.274 6.274 3 C 0.038 3.962 4 C 0.286 3.714 5 O -0.422 6.422 6 O -0.268 6.268 7 C 0.064 3.936 8 C -0.229 4.229 9 C -0.085 4.085 10 C -0.260 4.260 11 C 0.086 3.914 12 C -0.523 4.523 13 H 0.098 0.902 14 C -0.182 4.182 15 N -0.449 5.449 16 Si 0.807 3.193 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.180 1.180 20 C -0.208 4.208 21 C -0.101 4.101 22 C -0.180 4.180 23 C -0.149 4.149 24 C -0.155 4.155 25 H 0.089 0.911 26 H 0.125 0.875 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.848 1.951 -17.480 17.609 hybrid contribution -0.236 -0.020 1.288 1.309 sum 0.612 1.930 -16.193 16.319 Atomic orbital electron populations 1.23027 0.79364 1.04378 1.00776 1.87961 1.21551 1.23669 1.94194 1.23062 1.00477 0.85041 0.87630 1.25124 0.71987 0.87416 0.86889 1.90600 1.48307 1.16114 1.87138 1.86793 1.79852 1.42679 1.17490 1.21584 1.00861 0.91344 0.79825 1.18978 0.94017 1.10070 0.99877 1.20686 0.95646 0.96078 0.96058 1.21186 0.97632 1.05590 1.01639 1.18044 0.91668 0.90013 0.91634 1.19926 1.10096 1.20029 1.02243 0.90176 1.26829 0.92897 0.98080 1.00370 1.69863 1.16505 1.29152 1.29340 0.85132 0.80011 0.77683 0.76471 1.18637 1.19181 1.18037 1.21265 0.97316 1.03508 0.98700 1.20768 0.97190 0.97022 0.95123 1.23563 1.01544 1.00617 0.92281 1.22774 0.95084 1.02471 0.94619 1.23162 0.90423 1.04466 0.97434 0.91100 0.87522 0.95315 0.91606 0.91052 0.86490 0.87722 0.89933 0.87791 0.87766 0.88580 0.88100 0.88107 0.88064 0.88027 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.59 113.37 1.20 1.64 16 2 O -0.36 -9.36 10.36 -137.36 -1.42 -10.78 16 3 C 0.08 1.99 1.18 -11.01 -0.01 1.98 16 4 C 0.44 14.42 6.41 71.24 0.46 14.87 16 5 O -0.53 -18.70 15.78 21.95 0.35 -18.36 16 6 O -0.35 -13.29 9.65 -46.82 -0.45 -13.75 16 7 C 0.14 5.24 5.58 71.24 0.40 5.64 16 8 C -0.23 -10.23 5.54 -19.67 -0.11 -10.34 16 9 C -0.07 -2.98 9.67 22.22 0.21 -2.77 16 10 C -0.24 -11.93 9.80 22.73 0.22 -11.71 16 11 C 0.09 4.85 5.56 -21.29 -0.12 4.73 16 12 C -0.49 -26.57 9.06 23.46 0.21 -26.36 16 13 H 0.08 4.13 7.89 -2.91 -0.02 4.10 16 14 C 0.03 1.68 5.18 85.26 0.44 2.12 16 15 N -0.82 -42.95 10.94 21.83 0.24 -42.71 16 16 Si 0.99 37.80 29.59 68.60 2.03 39.83 16 17 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 18 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 20 C -0.19 -10.12 8.68 22.73 0.20 -9.92 16 21 C -0.08 -3.98 9.67 22.22 0.21 -3.77 16 22 C -0.14 -2.57 7.07 31.12 0.22 -2.35 16 23 C -0.11 -1.55 8.03 31.18 0.25 -1.30 16 24 C -0.12 -2.31 7.47 31.18 0.23 -2.07 16 25 H 0.07 1.12 6.79 -2.38 -0.02 1.11 16 26 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.03 0.73 7.16 -2.39 -0.02 0.71 16 28 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 29 H 0.07 2.57 8.07 -2.39 -0.02 2.55 16 30 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 33 H 0.10 5.80 6.22 -2.91 -0.02 5.78 16 34 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.10 1.43 6.70 -2.39 -0.02 1.41 16 36 H 0.10 1.95 7.37 -2.39 -0.02 1.93 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 40 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -63.47 338.54 5.80 -57.68 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 1.04 Total: 27.69 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 4.02 Total: -39.60 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.24 Total: -42.71 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.53 Total: -42.88 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -63.47 5.80 -57.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781822244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.916 kcal (2) G-P(sol) polarization free energy of solvation -63.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds